The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	37914	50349	1900813		Synechococcus_phage(28.57%)	8	NA	NA
VED98994.1|37914_41688_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	6.1e-40
VED98995.1|41921_43376_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	6.3e-54
VED98996.1|43403_44426_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.7	4.0e-63
VED98997.1|44593_45148_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
VED98998.1|45331_46879_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	5.7e-45
VED98999.1|46936_48061_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
VED99000.1|48223_49579_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
VED99001.1|49857_50349_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	1.4e-18
>prophage 2
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	419790	508428	1900813	integrase,tail,terminase,portal,holin,capsid,head,tRNA	Streptococcus_phage(62.3%)	108	413619:413636	465285:465302
413619:413636	attL	TGGAAATTAAAGGAAAAA	NA	NA	NA	NA
VED99345.1|419790_421068_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	49.6	3.6e-93
VED99346.1|421459_421819_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VED99347.1|421932_422844_-	PTS system mannose-specific transporter subunit IID	NA	NA	NA	NA	NA
VED99348.1|422860_423670_-	PTS system mannose-specific transporter subunit IIC	NA	NA	NA	NA	NA
VED99349.1|423758_424751_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
VED99350.1|425102_425915_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
VED99351.1|426178_427639_+	permease family protein	NA	A0A0R6PHV4	Moraxella_phage	29.5	2.9e-38
VED99352.1|427792_428254_+	P-loop hydrolase	NA	NA	NA	NA	NA
VED99353.1|428228_428753_+	acetyltransferase family protein	NA	NA	NA	NA	NA
VED99354.1|428761_430012_+	biofilm regulatory protein A	NA	NA	NA	NA	NA
VED99355.1|430122_430479_-	chemotaxis protein	NA	NA	NA	NA	NA
VED99356.1|430475_430895_-	protein hit	NA	NA	NA	NA	NA
VED99357.1|430966_431692_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
VED99358.1|431694_432729_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
VED99359.1|432792_433584_+	phosphotransferase	NA	NA	NA	NA	NA
VED99360.1|433583_434219_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
VED99361.1|434416_435496_-|integrase	integrase	integrase	A7J266	Streptococcus_phage	93.3	7.5e-177
VED99362.1|435616_436474_-	Site-specific DNA methylase	NA	A0A2H4UUI2	Bodo_saltans_virus	29.3	9.9e-15
VED99363.1|436530_438252_-	prophage Lp2 protein 4	NA	NA	NA	NA	NA
VED99364.1|438376_438763_-	peptidase	NA	Q7Y4M1	Streptococcus_phage	58.4	1.3e-38
VED99365.1|438766_439114_-	Cro/CI family phage transcriptional regulator	NA	A0A126GGQ7	Streptococcus_phage	73.5	1.5e-41
VED99366.1|439404_439614_+	phage protein	NA	M1Q1B4	Streptococcus_phage	53.6	7.7e-14
VED99367.1|439672_439948_+	phage protein	NA	A7J272	Streptococcus_phage	95.6	1.7e-45
VED99368.1|439944_440115_+	phage protein	NA	A7J273	Streptococcus_phage	89.3	2.0e-20
VED99369.1|440107_440314_+	phage protein	NA	NA	NA	NA	NA
VED99370.1|440310_440694_+	phage protein	NA	A7J274	Streptococcus_phage	99.2	6.1e-65
VED99371.1|440690_440843_+	phage protein	NA	A7J275	Streptococcus_phage	100.0	4.4e-19
VED99372.1|440839_441043_+	phage protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
VED99373.1|441130_441430_+	phage protein	NA	A7J277	Streptococcus_phage	92.9	1.0e-38
VED99374.1|441429_442587_+	phage protein	NA	A7J278	Streptococcus_phage	99.7	1.7e-219
VED99375.1|442600_443164_+	phage protein	NA	D2J040	Enterococcus_phage	57.9	7.4e-51
VED99376.1|443206_445138_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	87.8	0.0e+00
VED99377.1|445142_447527_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	97.6	8.8e-287
VED99378.1|447893_448169_+	phage protein	NA	A7J283	Streptococcus_phage	96.7	8.6e-45
VED99379.1|448165_449488_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	98.0	4.6e-253
VED99380.1|449488_449650_+	phage protein	NA	A7J285	Streptococcus_phage	94.3	1.2e-22
VED99381.1|449652_449919_+	phage protein	NA	A7J287	Streptococcus_phage	60.0	1.6e-16
VED99382.1|449920_450556_+	phage protein	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
VED99383.1|450829_451264_+	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
VED99384.1|451841_452756_+	phage protein	NA	NA	NA	NA	NA
VED99385.1|452774_453236_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99386.1|453373_453751_-	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
VED99387.1|453802_453988_-	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
VED99388.1|454086_454518_+|terminase	terminase	terminase	A0A1S5SCD2	Streptococcus_phage	69.9	2.2e-47
VED99389.1|454495_455803_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.2	5.9e-184
VED99390.1|455814_457317_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
VED99391.1|457297_458923_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	2.4e-46
VED99392.1|458913_459093_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99393.1|459152_459422_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	2.3e-34
VED99394.1|459517_459697_+	Uncharacterised protein	NA	M1NRK8	Streptococcus_phage	79.7	2.6e-18
VED99395.1|459811_460060_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99396.1|460061_460805_+	antirepressor	NA	M1PKL6	Streptococcus_phage	56.9	5.3e-73
VED99397.1|460916_461450_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
VED99398.1|461459_461840_+	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.9	5.2e-08
VED99399.1|461839_462295_+|capsid	Phage major capsid protein	capsid	A0A286QP97	Streptococcus_phage	56.2	8.6e-34
VED99400.1|462291_462822_+|head	phage head protein	head	O34062	Streptococcus_phage	49.4	2.8e-36
VED99401.1|462922_463165_+	phage protein	NA	NA	NA	NA	NA
VED99402.1|463178_463298_+	phage protein	NA	NA	NA	NA	NA
VED99403.1|463529_463715_+	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	44.3	7.6e-05
VED99404.1|463952_464183_+	phage protein	NA	A0A097BY98	Enterococcus_phage	59.4	2.1e-12
VED99405.1|464179_464569_+	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
VED99406.1|464578_465232_+|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.4e-40
VED99407.1|465277_465637_+	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
465285:465302	attR	TGGAAATTAAAGGAAAAA	NA	NA	NA	NA
VED99408.1|466021_466183_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99409.1|467274_468045_+	tape measure domain protein	NA	NA	NA	NA	NA
VED99410.1|468137_468842_+|tail	phage minor tail protein	tail	NA	NA	NA	NA
VED99411.1|468781_469273_+|tail	minor tail protein	tail	K4JW62	Streptococcus_phage	62.9	2.2e-11
VED99412.1|469304_470084_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
VED99413.1|470080_472117_+	phage protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
VED99414.1|472113_473121_+	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	72.2	2.6e-139
VED99415.1|473133_475152_+	Phage infection protein	NA	Q938J9	Temperate_phage	69.2	3.9e-171
VED99416.1|475163_475595_+	phage protein	NA	A3F661	Streptococcus_phage	90.0	7.6e-64
VED99417.1|475597_476212_+	phage protein	NA	Q938J7	Temperate_phage	79.4	1.8e-66
VED99418.1|476222_476678_+|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	3.0e-63
VED99419.1|476679_476793_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	82.9	2.2e-07
VED99420.1|476789_478004_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.5	9.7e-165
VED99421.1|478248_479043_+	streptococcal phage DNAse	NA	A7J2B8	Streptococcus_phage	35.6	8.9e-26
VED99422.1|479109_479289_+	paratox	NA	A3F673	Streptococcus_phage	79.7	5.2e-19
VED99423.1|479533_480070_+	ribosome maturation factor rimP	NA	NA	NA	NA	NA
VED99424.1|480256_481402_+	transcription elongation factor	NA	NA	NA	NA	NA
VED99425.1|481417_481714_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VED99426.1|481706_482009_+	ribosomal protein in infB 5'region	NA	NA	NA	NA	NA
VED99427.1|482028_484890_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.2	4.5e-19
VED99428.1|485095_485446_+	truncated ribosome-binding factor A	NA	NA	NA	NA	NA
VED99429.1|485576_486566_-	esterase / lipase	NA	NA	NA	NA	NA
VED99430.1|486737_487172_+	copAB ATPase metal-fist type repressor	NA	NA	NA	NA	NA
VED99431.1|487171_489403_+	copper-exporting ATPase	NA	A0A218MNH6	uncultured_virus	37.5	2.6e-115
VED99432.1|489416_489620_+	copper chaperone	NA	NA	NA	NA	NA
VED99433.1|489823_490594_-	lactose phosphotransferase system repressor	NA	A0A077SK06	Escherichia_phage	27.8	6.4e-21
VED99434.1|490830_491304_+	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein	NA	NA	NA	NA	NA
VED99435.1|491296_491602_+	PTS system galactose-specific transporter subunit IIB	NA	NA	NA	NA	NA
VED99436.1|491627_493079_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
VED99437.1|493335_493761_+	galactose-6-phosphate isomerase subunit	NA	NA	NA	NA	NA
VED99438.1|493775_494291_+	galactose-6-phosphate isomerase subunit	NA	NA	NA	NA	NA
VED99439.1|494300_494651_+	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
VED99440.1|494800_495778_+	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
VED99441.1|495866_495956_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99442.1|495974_496592_+	HAD superfamily hydrolase	NA	NA	NA	NA	NA
VED99443.1|496593_497418_+	haloacid dehalogenase	NA	NA	NA	NA	NA
VED99444.1|497453_498011_-	TetR family transcriptional regulator	NA	A0A1X9I6A2	Streptococcus_phage	60.3	3.2e-14
VED99445.1|498303_499146_+	EDD, DegV family domain-containing protein	NA	A0A1X9I5J4	Streptococcus_phage	61.9	1.3e-91
VED99446.1|499274_499997_-	lipoprotein	NA	NA	NA	NA	NA
VED99447.1|500198_501830_+	Sodium-dependent phosphate transporter	NA	A0A1B1ITU5	uncultured_Mediterranean_phage	38.8	2.7e-05
VED99448.1|501947_503096_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
VED99449.1|503218_504058_+	2,5-diketo-D-gluconic acid reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.3	2.5e-50
VED99450.1|504189_504723_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
VED99451.1|505093_506011_+|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
VED99452.1|506388_508428_+|tRNA	glycyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
>prophage 3
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	709335	837125	1900813	integrase,tail,protease,terminase,portal,holin,head,tRNA,transposase	Streptococcus_phage(37.5%)	147	794905:794964	836013:836090
VED99629.1|709335_710364_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VED99630.1|710565_711270_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
VED99631.1|711388_712105_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
VED99632.1|712399_713362_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
VED99633.1|713374_715180_+	oligoendopeptidase F	NA	NA	NA	NA	NA
VED99634.1|715553_716750_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
VED99635.1|716851_717523_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
VED99636.1|717585_718641_+	foldase protein prsA 1	NA	NA	NA	NA	NA
VED99637.1|719027_721646_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.5e-61
VED99638.1|721999_722221_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
VED99639.1|722217_722979_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
VED99640.1|722997_723693_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VED99641.1|723789_724005_-	Transposase	NA	U5P429	Shigella_phage	43.9	7.0e-10
VED99642.1|724044_724215_-|transposase	transposase	transposase	U5P429	Shigella_phage	46.3	1.5e-07
VED99643.1|724260_724614_-	DNA-binding protein	NA	A0A1B1P773	Bacillus_phage	35.2	1.2e-06
VED99644.1|724646_724940_-|transposase	transposase	transposase	NA	NA	NA	NA
VED99645.1|725035_726349_-	chloride channel protein	NA	NA	NA	NA	NA
VED99646.1|726323_727283_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	69.9	1.8e-126
VED99647.1|727615_729775_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	3.6e-263
VED99648.1|729794_730013_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	48.0	2.3e-13
VED99649.1|730406_730670_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
VED99650.1|730674_732408_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
VED99651.1|732592_734020_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
VED99652.1|734114_735389_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
VED99653.1|735499_736585_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
VED99654.1|736682_737309_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	1.7e-35
VED99655.1|737388_737652_+	membrane protein	NA	NA	NA	NA	NA
VED99656.1|737704_738514_-	membrane protein	NA	NA	NA	NA	NA
VED99657.1|738658_739156_+	GAF domain-containing protein	NA	NA	NA	NA	NA
VED99658.1|739155_740826_+	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	5.1e-47
VED99659.1|741098_742040_-	biotin-protein ligase	NA	NA	NA	NA	NA
VED99660.1|742242_744621_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
VED99661.1|745157_746354_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
VED99662.1|746527_747787_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VED99663.1|748143_748749_+	immunoglobulin G-binding protein G	NA	NA	NA	NA	NA
VED99664.1|749011_750145_+|transposase	transposase	transposase	NA	NA	NA	NA
VED99665.1|750312_750855_+	acetyltransferase family protein	NA	NA	NA	NA	NA
VED99666.1|750863_752147_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
VED99667.1|752162_753023_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
VED99668.1|753024_753990_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
VED99669.1|754100_755384_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VED99670.1|755376_755868_+	shikimate kinase	NA	NA	NA	NA	NA
VED99671.1|756075_757527_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
VED99672.1|757608_758964_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.0	8.9e-252
VED99673.1|759175_759688_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.5	6.6e-91
VED99674.1|759772_760174_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
VED99675.1|760278_761763_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VED99676.1|762136_763357_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
VED99677.1|763476_763842_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
VED99678.1|763956_764688_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
VED99679.1|764857_765028_-|transposase	transposase	transposase	U5P429	Shigella_phage	46.3	1.5e-07
VED99680.1|765073_765427_-	DNA-binding protein	NA	A0A1B1P773	Bacillus_phage	35.2	2.0e-06
VED99681.1|765459_765753_-|transposase	transposase	transposase	NA	NA	NA	NA
VED99682.1|765830_767141_-	membrane protein	NA	NA	NA	NA	NA
VED99683.1|767364_768237_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
VED99684.1|768536_769343_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.3	1.1e-63
VED99685.1|769363_769879_-|transposase	transposase	transposase	NA	NA	NA	NA
VED99686.1|770122_770251_+	membrane protein	NA	NA	NA	NA	NA
VED99687.1|770307_771621_+	GTPase ObgE	NA	NA	NA	NA	NA
VED99688.1|771689_771848_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VED99689.1|771852_772548_-	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
VED99690.1|772687_773428_-	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.5e-35
VED99691.1|773427_775602_-	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
VED99692.1|775794_777786_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VED99693.1|778048_778192_+	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
VED99694.1|778203_779742_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	5.0e-41
VED99695.1|779738_780995_+	Protein dltB	NA	NA	NA	NA	NA
VED99696.1|781012_781252_+	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
VED99697.1|781244_782495_+	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
VED99698.1|782525_783509_+	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
VED99699.1|784023_784611_-|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.8	4.1e-28
VED99700.1|784984_785821_-	maltose transport system permease	NA	NA	NA	NA	NA
VED99701.1|785820_787182_-	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
VED99702.1|787455_788703_-	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
VED99703.1|788945_789965_+	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
VED99704.1|790080_791574_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
VED99705.1|791608_793873_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.6e-11
VED99706.1|794129_794750_-	phage protein	NA	NA	NA	NA	NA
794905:794964	attL	AAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATT	NA	NA	NA	NA
VED99707.1|795024_796113_-|integrase	integrase	integrase	Q38159	Streptococcus_phage	100.0	3.8e-205
VED99708.1|796153_796306_+	phage protein	NA	NA	NA	NA	NA
VED99709.1|796362_797172_-	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
VED99710.1|797184_798009_-	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	84.8	8.4e-120
VED99711.1|798364_798514_+	Uncharacterised protein	NA	J7KH12	Streptococcus_phage	91.8	4.3e-19
VED99712.1|798499_798715_-	Uncharacterised protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
VED99713.1|798773_798932_+	phage membrane protein	NA	J7KH24	Streptococcus_phage	90.4	6.4e-21
VED99714.1|799030_799672_-	phage protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
VED99715.1|799723_799924_+	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	61.4	2.1e-08
VED99716.1|800055_800295_-	phage protein	NA	NA	NA	NA	NA
VED99717.1|800461_800647_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
VED99718.1|800725_801022_+	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
VED99719.1|801018_801153_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	97.7	2.5e-18
VED99720.1|801168_801483_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	95.2	2.7e-50
VED99721.1|801496_802327_+	dnaD and phage-associated domain-containing protein	NA	A0A1S5S918	Streptococcus_phage	54.7	6.4e-67
VED99722.1|802313_803096_+	phage replication protein	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	97.3	1.8e-143
VED99723.1|803086_803224_+	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
VED99724.1|803236_803590_+	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	54.0	2.8e-16
VED99725.1|803570_803825_+	phage protein	NA	Q938N0	Temperate_phage	97.6	1.8e-41
VED99726.1|803845_804328_+	phage protein	NA	Q938M9	Temperate_phage	98.8	1.6e-49
VED99727.1|804328_805003_+	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	97.3	2.0e-103
VED99728.1|804995_805415_+	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	97.1	3.1e-70
VED99729.1|805623_806064_+	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	98.6	1.6e-80
VED99730.1|806060_806417_+	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	2.1e-59
VED99731.1|806413_806659_+	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	93.8	4.8e-39
VED99732.1|806658_806946_+	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
VED99733.1|806929_807343_+	phage protein	NA	Q938M1	Temperate_phage	62.4	4.6e-34
VED99734.1|807339_807510_+	phage protein	NA	Q938M0	Temperate_phage	100.0	8.5e-11
VED99735.1|807506_807791_+	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
VED99736.1|807795_807996_+	Uncharacterised protein	NA	A0A0E3T873	Gordonia_phage	45.3	4.6e-08
VED99737.1|808008_808401_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99738.1|808400_809036_+	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
VED99739.1|809306_809747_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	97.3	7.2e-78
VED99740.1|810315_810747_+|terminase	phage terminase small subunit	terminase	A0A1S5SCD2	Streptococcus_phage	69.9	1.3e-47
VED99741.1|810724_812032_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.2	5.9e-184
VED99742.1|812043_813546_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
VED99743.1|813526_815152_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	2.4e-46
VED99744.1|815142_815322_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99745.1|815430_815691_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	72.2	4.8e-21
VED99746.1|815746_815926_+	Uncharacterised protein	NA	M1NRK8	Streptococcus_phage	79.7	2.6e-18
VED99747.1|816040_816211_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED99748.1|816366_817032_+	antirepressor	NA	M1PKL6	Streptococcus_phage	56.6	1.2e-63
VED99749.1|817143_817677_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
VED99750.1|817686_818067_+	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.9	5.2e-08
VED99751.1|818066_819143_+|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
VED99752.1|819152_819395_+	phage protein	NA	NA	NA	NA	NA
VED99753.1|819408_819762_+	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
VED99754.1|819758_820067_+	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
VED99755.1|820056_820413_+	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.7e-17
VED99756.1|820409_820799_+	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
VED99757.1|820808_821456_+|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.4e-40
VED99758.1|821508_821868_+	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
VED99759.1|821909_822149_+	phage protein	NA	NA	NA	NA	NA
VED99760.1|822151_822241_+	phage protein	NA	NA	NA	NA	NA
VED99761.1|822255_825522_+	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	1.6e-04
VED99762.1|825553_826333_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
VED99763.1|826329_828366_+	phage protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
VED99764.1|828362_829370_+	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	72.2	2.6e-139
VED99765.1|829382_831293_+	phage infection protein	NA	Q938J9	Temperate_phage	71.3	6.0e-121
VED99766.1|831306_831468_+	phage protein	NA	NA	NA	NA	NA
VED99767.1|831470_832088_+	phage protein	NA	Q938J7	Temperate_phage	89.3	1.4e-79
VED99768.1|832097_832373_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
VED99769.1|832369_832597_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
VED99770.1|832605_832716_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
VED99771.1|832712_833609_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	82.6	1.0e-150
VED99772.1|833987_834422_-	phage membrane protein	NA	NA	NA	NA	NA
VED99773.1|834693_835494_-	streptodornase	NA	NA	NA	NA	NA
VED99774.1|835731_835920_+	paratox	NA	A3F673	Streptococcus_phage	81.4	6.5e-20
VED99775.1|836510_837125_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
836013:836090	attR	AAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
>prophage 4
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	998569	1082266	1900813	integrase,tail,protease,terminase,portal,capsid,tRNA,transposase	Streptococcus_phage(76.27%)	99	1018536:1018564	1057746:1057774
VED99933.1|998569_998893_+|transposase	truncated transposase	transposase	NA	NA	NA	NA
VED99934.1|998865_999564_+|transposase	transposase	transposase	H7BW61	unidentified_phage	37.5	8.1e-31
VED99935.1|999643_1001020_+|tRNA	tRNA modification GTPase	tRNA	NA	NA	NA	NA
VED99936.1|1001087_1002497_-	dipeptidase	NA	NA	NA	NA	NA
VED99937.1|1002621_1003224_-	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA	NA
VED99938.1|1003407_1005204_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
VED99939.1|1005305_1006703_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
VED99940.1|1006817_1007864_-	bacterial extracellular solute-binding family protein	NA	NA	NA	NA	NA
VED99941.1|1007857_1008646_-	response regulator	NA	NA	NA	NA	NA
VED99942.1|1008649_1010299_-	two-component sensor kinase	NA	Q9EYF3	Enterobacteria_phage	33.3	1.8e-12
VED99943.1|1010434_1011262_-	phospotransferase system (PTS), enzyme II component D	NA	NA	NA	NA	NA
VED99944.1|1011258_1012068_-	PTS system, mannose-specific IIC component	NA	NA	NA	NA	NA
VED99945.1|1012084_1012576_-	PTS system mannose/fructose family transporter subunit IIB	NA	NA	NA	NA	NA
VED99946.1|1012594_1013020_-	PTS system mannose-specific transporter subunit IIA	NA	NA	NA	NA	NA
VED99947.1|1013226_1014246_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
VED99948.1|1014375_1014813_-	methionine sulfoxide reductase B	NA	NA	NA	NA	NA
VED99949.1|1014998_1015730_-	SclB protein	NA	NA	NA	NA	NA
VED99950.1|1016053_1017886_-	GTP-binding protein LepA	NA	A0A2K9L2P9	Tupanvirus	41.0	2.2e-19
1018536:1018564	attL	GACCATTCAAAACAGCATAGCTCTAAAAC	NA	NA	NA	NA
VED99951.1|1018672_1018762_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED99952.1|1018704_1018887_-	phage protein	NA	J7KBZ4	Streptococcus_phage	74.6	1.9e-16
VED99953.1|1019107_1019863_+	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
VED99954.1|1019984_1021202_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	59.5	2.6e-162
VED99955.1|1021195_1021312_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
VED99956.1|1021320_1021548_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
VED99957.1|1021544_1021817_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
VED99958.1|1021828_1022461_-	phage protein	NA	Q938J7	Temperate_phage	50.0	2.6e-44
VED99959.1|1022463_1022892_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
VED99960.1|1022903_1024808_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
VED99961.1|1024817_1025825_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
VED99962.1|1025821_1027873_-	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
VED99963.1|1027869_1028640_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
VED99964.1|1028652_1032753_-|tail	tail protein	tail	A3F654	Streptococcus_phage	66.3	0.0e+00
VED99965.1|1032978_1033281_-	Uncharacterised protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
VED99966.1|1033373_1033958_-|tail	major tail protein - phage associated	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
VED99967.1|1033969_1034350_-	Uncharacterised protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
VED99968.1|1034342_1034741_-	Uncharacterised protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
VED99969.1|1034742_1035105_-	Uncharacterised protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
VED99970.1|1035097_1035406_-	Uncharacterised protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
VED99971.1|1035405_1035579_-	Uncharacterised protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
VED99972.1|1035592_1036726_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
VED99973.1|1036742_1037549_-	scaffolding protein	NA	A3F644	Streptococcus_phage	97.8	6.0e-147
VED99974.1|1037529_1038717_-|portal	HK97 family phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
VED99975.1|1038869_1039082_-	Uncharacterised protein	NA	A3F642	Streptococcus_phage	97.1	1.4e-34
VED99976.1|1039084_1040815_-|terminase	putative phage terminase, large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
VED99977.1|1040827_1041145_-	Uncharacterised protein	NA	A3F640	Streptococcus_phage	99.0	3.9e-49
VED99978.1|1041285_1041591_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	96.0	3.8e-54
VED99979.1|1041583_1041970_-	Uncharacterised protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
VED99980.1|1041995_1042199_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED99981.1|1042256_1042550_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED99982.1|1042703_1043279_-	phage associated recombinase	NA	A3F636	Streptococcus_phage	99.5	7.4e-107
VED99983.1|1043438_1043840_-	phage 31 late promoter transcriptional activator	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
VED99984.1|1043854_1044682_-	B-cell receptor associated protein-like protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
VED99985.1|1044684_1045023_-	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
VED99986.1|1045019_1045301_-	Uncharacterised protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
VED99987.1|1045315_1045708_-	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
VED99988.1|1045704_1045926_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED99989.1|1045922_1046408_-	phage protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
VED99990.1|1046412_1047045_-	phage protein	NA	L0P368	Streptococcus_phage	65.7	5.9e-81
VED99991.1|1047046_1047316_-	phage membrane protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
VED99992.1|1047312_1047483_-	phage protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
VED99993.1|1047479_1047923_-	phage protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
VED99994.1|1047939_1048065_-	phage protein	NA	NA	NA	NA	NA
VED99995.1|1048078_1048306_-	phage protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
VED99996.1|1048305_1049118_-	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	6.8e-122
VED99997.1|1049117_1049879_-	dnaD and phage-associated domain protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
VED99998.1|1049871_1051212_-	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.1e-209
VED99999.1|1051198_1051387_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00001.1|1051507_1051699_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00002.1|1051791_1052049_-	phage protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
VEE00003.1|1052122_1052842_-	antirepressor - phage associated	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
VEE00004.1|1052893_1053394_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00005.1|1053513_1053648_-	Uncharacterised protein	NA	A3F616	Streptococcus_phage	95.5	2.4e-16
VEE00006.1|1053721_1053934_-	phage protein	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
VEE00007.1|1053968_1054244_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00008.1|1054532_1054883_+	repressor - phage associated	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
VEE00009.1|1054886_1055279_+	phage protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
VEE00010.1|1055289_1056030_+	phage protein	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
VEE00011.1|1056340_1057537_+|integrase	phage associated integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
VEE00012.1|1058058_1058691_-	membrane protein	NA	NA	NA	NA	NA
1057746:1057774	attR	GACCATTCAAAACAGCATAGCTCTAAAAC	NA	NA	NA	NA
VEE00013.1|1058690_1059455_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
VEE00014.1|1059454_1060207_-	oleoyl-[acyl-carrier-protein] hydrolase	NA	NA	NA	NA	NA
VEE00015.1|1060216_1061413_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
VEE00016.1|1061409_1062051_-	acetyltransferase GNAT Family	NA	NA	NA	NA	NA
VEE00017.1|1062174_1063530_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
VEE00018.1|1063583_1064540_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
VEE00019.1|1064536_1065388_-	disA bacterial checkpoint controller nucleotide-binding family protein	NA	NA	NA	NA	NA
VEE00020.1|1065495_1066833_+	UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
VEE00021.1|1066832_1067624_+	cobyric acid synthase	NA	NA	NA	NA	NA
VEE00022.1|1067727_1068717_-	lipoate-protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	25.2	8.2e-13
VEE00023.1|1069094_1069697_-|transposase	transposase, IS861	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	47.0	2.0e-46
VEE00024.1|1069798_1072453_-	complement inhibitor protein	NA	NA	NA	NA	NA
VEE00025.1|1073003_1073321_+|transposase	transposase IS1239	transposase	H7BW61	unidentified_phage	41.1	4.6e-10
VEE00026.1|1073988_1075752_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.5	1.5e-33
VEE00027.1|1075784_1076072_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00028.1|1076082_1077492_-	branched-chain alpha-keto acid dehydrogenase E2 subunit	NA	NA	NA	NA	NA
VEE00029.1|1077676_1078678_-	TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit	NA	NA	NA	NA	NA
VEE00030.1|1078733_1079702_-	Pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA	NA
VEE00031.1|1079986_1081894_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	4.4e-55
VEE00032.1|1081939_1082266_-|protease	protease	protease	NA	NA	NA	NA
>prophage 5
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	1106710	1210006	1900813	protease,tRNA,head,transposase	Streptococcus_phage(17.86%)	101	NA	NA
VEE00057.1|1106710_1107610_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
VEE00058.1|1107743_1107920_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
VEE00059.1|1108037_1108946_-	exfoliative toxin	NA	NA	NA	NA	NA
VEE00060.1|1109182_1109386_-	glutathione S-transferase	NA	NA	NA	NA	NA
VEE00061.1|1109912_1110899_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
VEE00062.1|1111105_1111408_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00063.1|1112087_1112318_-	hupothetical protein	NA	NA	NA	NA	NA
VEE00064.1|1112322_1113456_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE00065.1|1113778_1114246_+	SpeA variant	NA	A0A097PAT7	Streptococcus_pyogenes_phage	89.0	2.5e-76
VEE00066.1|1115810_1115942_-	exotoxin H precursor	NA	NA	NA	NA	NA
VEE00067.1|1115965_1116262_-	enterotoxin	NA	NA	NA	NA	NA
VEE00068.1|1116568_1116826_+	Uncharacterised protein	NA	M1PRU3	Streptococcus_phage	61.1	2.4e-09
VEE00069.1|1116812_1117064_-	phage protein	NA	A0A141E1R7	Streptococcus_phage	56.0	1.0e-12
VEE00070.1|1117119_1117911_+	phage protein	NA	A0A1S5SAN8	Streptococcus_phage	36.8	3.6e-35
VEE00071.1|1118258_1119002_+	Phage transcriptional repressor	NA	J7KJ52	Streptococcus_phage	58.3	1.1e-70
VEE00072.1|1119061_1119532_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00073.1|1119557_1120334_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
VEE00074.1|1120438_1121443_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	1.7e-61
VEE00075.1|1121497_1121791_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE00076.1|1122054_1123260_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VEE00077.1|1123649_1123880_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VEE00078.1|1124035_1125169_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE00079.1|1125269_1126292_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VEE00080.1|1126414_1128838_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	1.6e-97
VEE00081.1|1129071_1129890_-	phosphate ABC transporter ATPase	NA	NA	NA	NA	NA
VEE00082.1|1129956_1131906_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	5.6e-122
VEE00083.1|1132040_1132682_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
VEE00084.1|1132739_1134008_-	dihydroorotase	NA	NA	NA	NA	NA
VEE00085.1|1134165_1134819_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.1	3.4e-39
VEE00086.1|1134951_1135602_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
VEE00087.1|1135630_1136494_-	cystine-binding protein	NA	NA	NA	NA	NA
VEE00088.1|1136611_1138066_-	amidase	NA	NA	NA	NA	NA
VEE00089.1|1138262_1138892_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
VEE00090.1|1138949_1139642_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
VEE00091.1|1139918_1140455_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00092.1|1140727_1141582_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE00093.1|1141660_1142449_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
VEE00094.1|1142441_1143155_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VEE00095.1|1143817_1144627_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	6.6e-53
VEE00096.1|1144610_1145051_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	1.3e-34
VEE00097.1|1145066_1146278_-	phosphopentomutase	NA	NA	NA	NA	NA
VEE00098.1|1146354_1147038_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
VEE00099.1|1147100_1147205_-	hupothetical protein	NA	NA	NA	NA	NA
VEE00100.1|1147209_1148343_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE00101.1|1148740_1150840_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	5.6e-120
VEE00102.1|1150897_1151641_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
VEE00103.1|1151788_1152388_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
VEE00104.1|1152397_1153627_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	1.7e-137
VEE00105.1|1153756_1153927_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
VEE00106.1|1153946_1154444_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
VEE00107.1|1154523_1155363_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
VEE00108.1|1155571_1156747_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
VEE00109.1|1156733_1158011_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
VEE00110.1|1158240_1159230_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
VEE00111.1|1159216_1160230_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
VEE00112.1|1160222_1161167_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VEE00113.1|1161148_1162027_-	mevalonate kinase	NA	NA	NA	NA	NA
VEE00114.1|1162320_1163553_-	two component system histidine kinase	NA	NA	NA	NA	NA
VEE00115.1|1163561_1164230_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
VEE00116.1|1164232_1164883_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
VEE00117.1|1165102_1167115_+	5'-nucleotidase	NA	NA	NA	NA	NA
VEE00118.1|1167195_1167606_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
VEE00119.1|1168497_1170375_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	2.5e-63
VEE00120.1|1170371_1171580_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
VEE00121.1|1171704_1172553_-	degV family protein	NA	NA	NA	NA	NA
VEE00122.1|1172552_1172933_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE00123.1|1173160_1173337_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
VEE00124.1|1173840_1174866_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
VEE00125.1|1175547_1175667_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VEE00126.1|1175822_1176530_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
VEE00127.1|1176681_1177275_-	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
VEE00128.1|1177373_1179320_-	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
VEE00129.1|1179316_1180228_-	1-phosphofructokinase	NA	NA	NA	NA	NA
VEE00130.1|1180224_1180893_-	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.2	6.3e-17
VEE00131.1|1181193_1182117_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VEE00132.1|1182129_1183188_-	regulatory protein	NA	NA	NA	NA	NA
VEE00133.1|1183365_1184358_-	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	6.3e-29
VEE00134.1|1184369_1185089_-|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
VEE00135.1|1185078_1185597_-	16S rRNA-processing protein	NA	NA	NA	NA	NA
VEE00136.1|1185811_1186333_-	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
VEE00137.1|1186468_1187344_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
VEE00138.1|1187523_1187925_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
VEE00139.1|1187944_1190971_-	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
VEE00140.1|1191902_1192142_-	RNA binding protein	NA	NA	NA	NA	NA
VEE00141.1|1192151_1192424_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
VEE00142.1|1192550_1194284_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
VEE00143.1|1194537_1195758_-	permease family protein	NA	NA	NA	NA	NA
VEE00144.1|1195769_1196480_-	bacitracin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.5	1.7e-36
VEE00145.1|1196479_1197751_-	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
VEE00146.1|1197926_1201103_-	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
VEE00147.1|1201348_1202431_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	4.7e-62
VEE00148.1|1202474_1203461_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.9	3.8e-26
VEE00149.1|1203470_1204730_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.9	2.7e-61
VEE00150.1|1204745_1205267_-	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
VEE00151.1|1205662_1206553_-	ribosomal large subunit pseudouridine synthase D	NA	A0A2H4UV25	Bodo_saltans_virus	25.3	3.6e-07
VEE00152.1|1206542_1207001_-	signal peptidase II	NA	NA	NA	NA	NA
VEE00153.1|1206997_1207912_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE00154.1|1208260_1208554_-	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
VEE00155.1|1208581_1208908_-	hypothetical ribosome-associated protein	NA	NA	NA	NA	NA
VEE00156.1|1208919_1209234_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
VEE00157.1|1209508_1210006_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	1220216	1227616	1900813		Streptococcus_phage(66.67%)	6	NA	NA
VEE00171.1|1220216_1221569_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	3.1e-31
VEE00172.1|1221789_1222131_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	3.8e-18
VEE00173.1|1222191_1223358_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	5.8e-34
VEE00174.1|1223451_1224138_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
VEE00175.1|1224134_1225298_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
VEE00176.1|1225405_1227616_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	6.5e-268
>prophage 7
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	1263025	1357334	1900813	integrase,tail,protease,terminase,portal,bacteriocin,tRNA,transposase	Streptococcus_phage(58.21%)	114	1288899:1288916	1360635:1360652
VEE00209.1|1263025_1265431_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
VEE00210.1|1265640_1266684_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
VEE00211.1|1266966_1267266_-	DNA-entry nuclease	NA	NA	NA	NA	NA
VEE00212.1|1267252_1267657_-	DNA-entry nuclease	NA	NA	NA	NA	NA
VEE00213.1|1267865_1268054_-	epuA protein	NA	NA	NA	NA	NA
VEE00214.1|1268057_1269329_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VEE00215.1|1269393_1269651_-	membrane protein	NA	NA	NA	NA	NA
VEE00216.1|1269916_1270333_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
VEE00217.1|1270345_1271752_-	ATP synthase F0F1 subunit beta	NA	NA	NA	NA	NA
VEE00218.1|1271914_1272790_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
VEE00219.1|1272805_1274314_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
VEE00220.1|1274329_1274866_-	ATP synthase delta chain	NA	NA	NA	NA	NA
VEE00221.1|1274865_1275360_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
VEE00222.1|1275377_1276094_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
VEE00223.1|1276128_1276326_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
VEE00224.1|1276717_1277740_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
VEE00225.1|1277753_1279712_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	9.9e-103
VEE00226.1|1280683_1283416_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
VEE00227.1|1283987_1285106_-	ABC transporter	NA	NA	NA	NA	NA
VEE00228.1|1285102_1286230_-	ABC transporter	NA	NA	NA	NA	NA
VEE00229.1|1286238_1287162_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
VEE00230.1|1287184_1287868_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
VEE00231.1|1287864_1288536_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VEE00232.1|1288510_1289869_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
1288899:1288916	attL	AGGGAAGCTTTTTGATAT	NA	NA	NA	NA
VEE00233.1|1289888_1290947_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
VEE00234.1|1290943_1291894_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
VEE00235.1|1292115_1292277_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
VEE00236.1|1293045_1294353_-	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
VEE00237.1|1294579_1295038_+	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	2.3e-18
VEE00238.1|1295169_1296894_-	septation ring formation regulator	NA	NA	NA	NA	NA
VEE00239.1|1297261_1299214_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.9	8.9e-144
VEE00240.1|1299214_1299784_-	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
VEE00241.1|1299796_1299913_-	hupothetical protein	NA	NA	NA	NA	NA
VEE00242.1|1299917_1301051_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE00243.1|1302124_1302472_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
VEE00244.1|1302586_1303849_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.0	3.5e-93
VEE00245.1|1303841_1304126_-	chorismate mutase	NA	NA	NA	NA	NA
VEE00246.1|1304301_1304751_-	flavodoxin	NA	NA	NA	NA	NA
VEE00247.1|1305144_1306086_+	DHH family protein	NA	NA	NA	NA	NA
VEE00248.1|1306200_1306461_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEE00249.1|1306572_1307757_-	tagatose-6-phosphate aldose/ketose isomerase	NA	NA	NA	NA	NA
VEE00250.1|1307776_1308499_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEE00251.1|1308649_1310197_-	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
VEE00252.1|1310348_1311767_-	dipeptidase	NA	NA	NA	NA	NA
VEE00253.1|1312044_1312284_+	Phage protein	NA	NA	NA	NA	NA
VEE00254.1|1312323_1312797_+	Uncharacterised protein	NA	A3F671	Streptococcus_phage	92.3	1.6e-78
VEE00255.1|1312798_1313155_+	phage protein	NA	NA	NA	NA	NA
VEE00256.1|1313223_1314090_-	phage protein	NA	Q938J2	Temperate_phage	99.0	4.5e-132
VEE00257.1|1314077_1314602_-	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
VEE00258.1|1314741_1315944_-	phage associated protein	NA	Q938J4	Temperate_phage	98.0	1.1e-237
VEE00259.1|1315940_1316051_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
VEE00260.1|1316059_1316287_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
VEE00261.1|1316283_1316556_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
VEE00262.1|1316567_1317206_-	phage protein	NA	A3F662	Streptococcus_phage	52.7	2.0e-44
VEE00263.1|1317208_1317637_-	phage protein	NA	Q938J8	Temperate_phage	83.6	1.8e-57
VEE00264.1|1317648_1319535_-	gp58-like family protein	NA	Q938J9	Temperate_phage	84.5	4.9e-216
VEE00265.1|1319549_1320563_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	98.8	4.3e-182
VEE00266.1|1320559_1322704_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	98.2	0.0e+00
VEE00267.1|1322700_1323408_-	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
VEE00268.1|1323407_1327331_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.8	1.0e-239
VEE00269.1|1327343_1327511_-	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
VEE00270.1|1327540_1327867_-	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
VEE00271.1|1327919_1328528_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
VEE00272.1|1328544_1328970_-	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
VEE00273.1|1328966_1329344_-	phage protein	NA	J7KDM3	Streptococcus_phage	73.6	1.8e-45
VEE00274.1|1329340_1329688_-	phage protein	NA	J7KJ42	Streptococcus_phage	88.2	2.9e-50
VEE00275.1|1329684_1329987_-	phage protein	NA	J7KC36	Streptococcus_phage	88.8	5.7e-42
VEE00276.1|1330131_1331316_-	phage protein	NA	J7KJ82	Streptococcus_phage	74.6	5.3e-160
VEE00277.1|1331340_1332006_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	6.0e-92
VEE00278.1|1331983_1333204_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
VEE00279.1|1333237_1333462_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
VEE00280.1|1333454_1333625_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
VEE00281.1|1333621_1335376_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
VEE00282.1|1335390_1335858_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.1	1.9e-81
VEE00283.1|1336025_1336367_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	89.8	9.6e-54
VEE00284.1|1336363_1336504_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00285.1|1336602_1336788_+	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
VEE00286.1|1336839_1337217_+	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
VEE00287.1|1337342_1338263_-	phage protein	NA	A0A126HAU2	Lactococcus_phage	72.5	8.2e-100
VEE00288.1|1338818_1339259_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
VEE00289.1|1339535_1339634_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00290.1|1339630_1339924_-	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	99.0	2.7e-49
VEE00291.1|1339971_1340736_-	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	91.9	2.8e-133
VEE00292.1|1340725_1341208_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
VEE00293.1|1341211_1341496_-	phage protein	NA	A3F628	Streptococcus_phage	97.9	1.4e-42
VEE00294.1|1341482_1341686_-	phage protein	NA	A3F626	Streptococcus_phage	89.2	7.8e-11
VEE00295.1|1341672_1342185_-	phage protein	NA	Q708P9	Streptococcus_phage	77.4	9.6e-66
VEE00296.1|1342181_1342523_-	phage protein	NA	M1NS23	Streptococcus_phage	39.6	1.4e-12
VEE00297.1|1342699_1343497_-	phage protein	NA	J7KGZ1	Streptococcus_phage	82.3	2.0e-126
VEE00298.1|1343489_1343690_-	phage protein	NA	NA	NA	NA	NA
VEE00299.1|1343686_1344613_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
VEE00300.1|1344615_1344945_-	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
VEE00301.1|1345000_1345207_-	phage protein	NA	NA	NA	NA	NA
VEE00302.1|1345215_1345356_-	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
VEE00303.1|1345352_1345586_-	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
VEE00304.1|1345566_1345953_-	phage DNA replication protein	NA	Q938N2	Temperate_phage	47.3	1.1e-24
VEE00305.1|1346471_1346657_-	phage protein	NA	Q938N3	Temperate_phage	91.8	3.1e-22
VEE00306.1|1346658_1346796_-	phage protein	NA	NA	NA	NA	NA
VEE00307.1|1346882_1347065_+	phage membrane protein	NA	NA	NA	NA	NA
VEE00308.1|1347061_1347193_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00309.1|1347205_1347967_-	phage antirepressor protein	NA	A0A0C5AEJ9	Bacteriophage	61.9	3.6e-85
VEE00310.1|1347977_1348217_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
VEE00311.1|1348309_1348951_+	phage protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
VEE00312.1|1349049_1349208_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	5.8e-22
VEE00313.1|1349266_1349482_+	Uncharacterised protein	NA	J7KBX0	Streptococcus_phage	97.1	8.8e-29
VEE00314.1|1349467_1349617_-	Uncharacterised protein	NA	J7KH12	Streptococcus_phage	91.8	4.3e-19
VEE00315.1|1349710_1349812_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00316.1|1349986_1350775_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	63.0	2.0e-86
VEE00317.1|1350784_1351090_+	phage membrane protein	NA	NA	NA	NA	NA
VEE00318.1|1351209_1352625_+|integrase	integrase	integrase	A5GZ62	Lactococcus_phage	47.0	2.3e-109
VEE00319.1|1352801_1353713_-	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
VEE00320.1|1353709_1354687_-	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
VEE00321.1|1354683_1355574_-	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
VEE00322.1|1355987_1357334_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
1360635:1360652	attR	AGGGAAGCTTTTTGATAT	NA	NA	NA	NA
>prophage 8
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	1394800	1434879	1900813	tail,terminase,head	Streptococcus_phage(64.0%)	65	NA	NA
VEE00353.1|1394800_1396600_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	36.7	1.0e-109
VEE00354.1|1396592_1396796_+	glutathione peroxidase	NA	NA	NA	NA	NA
VEE00355.1|1397144_1397384_+	Phage protein	NA	NA	NA	NA	NA
VEE00356.1|1397422_1397896_+	Uncharacterised protein	NA	A3F671	Streptococcus_phage	92.4	2.2e-80
VEE00357.1|1397897_1398254_+	phage protein	NA	NA	NA	NA	NA
VEE00358.1|1398370_1399576_-	N-acetylmuramoyl-L-alanine amidase	NA	Q938J4	Temperate_phage	84.0	2.5e-205
VEE00359.1|1399572_1399683_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	6.7e-09
VEE00360.1|1399686_1399872_-	phage protein	NA	Q938J5	Temperate_phage	96.7	1.1e-24
VEE00361.1|1399868_1400168_-	phage protein	NA	Q938J6	Temperate_phage	91.7	9.6e-42
VEE00362.1|1400178_1400811_-	phage protein	NA	Q938J7	Temperate_phage	47.6	3.2e-42
VEE00363.1|1400813_1401242_-	phage protein	NA	A3F661	Streptococcus_phage	89.4	6.8e-65
VEE00364.1|1401253_1403038_-	gp58-like family protein	NA	Q938J9	Temperate_phage	48.8	7.4e-97
VEE00365.1|1403047_1404055_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	61.7	1.3e-106
VEE00366.1|1404051_1406013_-	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	50.8	1.0e-102
VEE00367.1|1406009_1406705_-	phage protein	NA	A0A1B1P761	Bacillus_phage	29.6	2.0e-05
VEE00368.1|1406701_1408510_-|tail	minor tail protein GP26	tail	A0A1P8BMM7	Lactococcus_phage	53.0	2.6e-81
VEE00369.1|1408717_1409278_-	endonuclease	NA	A0A1B1IM39	Lactococcus_phage	84.4	1.0e-84
VEE00370.1|1409378_1409984_-|tail	minor tail protein GP26	tail	A0A1P8BMM1	Lactococcus_phage	66.8	2.7e-59
VEE00371.1|1409983_1410355_-	phage protein	NA	M1PL84	Streptococcus_phage	62.4	1.7e-35
VEE00372.1|1410369_1410633_-	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
VEE00373.1|1410643_1411237_-|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	3.5e-59
VEE00374.1|1411248_1411584_-	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
VEE00375.1|1411584_1411821_-	phage protein	NA	A0A0B5A7G2	Streptococcus_phage	71.4	2.5e-21
VEE00376.1|1411813_1412152_-	phage protein	NA	M1PFF8	Streptococcus_phage	70.3	2.2e-42
VEE00377.1|1412111_1412534_-	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	70.8	3.7e-47
VEE00378.1|1412543_1412744_-	phage protein	NA	NA	NA	NA	NA
VEE00379.1|1412743_1413655_-|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.3	9.9e-114
VEE00380.1|1413679_1414141_-	phage protein	NA	M1Q1L0	Streptococcus_phage	52.6	2.2e-37
VEE00381.1|1414221_1415637_-|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	2.9e-213
VEE00382.1|1415746_1416013_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	86.4	7.3e-33
VEE00383.1|1416005_1416185_-	phage protein	NA	NA	NA	NA	NA
VEE00384.1|1416234_1416459_-	phage protein	NA	NA	NA	NA	NA
VEE00385.1|1416464_1417958_-	phage protein	NA	M1Q184	Streptococcus_phage	55.6	3.7e-89
VEE00386.1|1417950_1419219_-	structural phage protein	NA	M1PFL4	Streptococcus_phage	76.3	3.1e-190
VEE00387.1|1419215_1419572_-	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
VEE00388.1|1419720_1420065_-	HNH endonuclease family protein	NA	M1Q0W7	Streptococcus_phage	68.5	4.2e-41
VEE00389.1|1420171_1420591_-	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	3.9e-57
VEE00390.1|1420857_1421493_-	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
VEE00391.1|1421492_1421894_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00392.1|1422084_1422567_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
VEE00393.1|1422570_1422855_-	phage protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
VEE00394.1|1422864_1423134_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	93.3	1.4e-44
VEE00395.1|1423130_1423415_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
VEE00396.1|1423408_1423606_-	phage protein	NA	A3F626	Streptococcus_phage	86.5	9.9e-11
VEE00397.1|1423592_1424105_-	phage protein	NA	Q708P9	Streptococcus_phage	74.4	3.4e-63
VEE00398.1|1424101_1424443_-	phage protein	NA	M1NS23	Streptococcus_phage	38.7	1.2e-11
VEE00399.1|1424619_1425417_-	phage protein	NA	J7KGZ1	Streptococcus_phage	82.6	2.0e-126
VEE00400.1|1425409_1425610_-	phage protein	NA	NA	NA	NA	NA
VEE00401.1|1425606_1426596_-	recombinase RecT	NA	A0A286QMX3	Streptococcus_phage	44.2	5.8e-59
VEE00402.1|1426595_1426928_-	phage protein	NA	J7KGX3	Streptococcus_phage	78.7	2.2e-42
VEE00403.1|1426983_1427190_-	phage protein	NA	NA	NA	NA	NA
VEE00404.1|1427198_1427339_-	phage protein	NA	NA	NA	NA	NA
VEE00405.1|1427344_1427557_-	phage protein	NA	Q938N1	Temperate_phage	58.6	5.4e-15
VEE00406.1|1427537_1427924_-	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	71.3	1.2e-44
VEE00407.1|1428427_1428613_-	phage protein	NA	Q938N3	Temperate_phage	93.4	2.8e-23
VEE00408.1|1428845_1429028_+	phage membrane protein	NA	NA	NA	NA	NA
VEE00409.1|1429024_1429156_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00410.1|1429196_1429409_-	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
VEE00411.1|1429610_1430366_+	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	61.2	3.3e-78
VEE00412.1|1430377_1430896_+	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	2.1e-31
VEE00413.1|1431027_1432485_+	site-specific recombinase/resolvase	NA	Q38184	Lactococcus_phage	50.7	1.5e-132
VEE00414.1|1432493_1432790_+	glutathione peroxidase	NA	NA	NA	NA	NA
VEE00415.1|1432835_1433219_-	Surface-layer 125 kDa protein	NA	NA	NA	NA	NA
VEE00416.1|1433202_1433706_-	membrane protein	NA	NA	NA	NA	NA
VEE00417.1|1434030_1434879_+	glycosyl hydrolases 25 family protein	NA	A0A223LJI5	Bacillus_phage	31.3	1.9e-18
>prophage 9
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	1496361	1528122	1900813	protease,tRNA,transposase,bacteriocin	Tupanvirus(14.29%)	38	NA	NA
VEE00479.1|1496361_1498305_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
VEE00480.1|1498725_1500060_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
VEE00481.1|1500061_1501060_-	glycosyltransferase	NA	NA	NA	NA	NA
VEE00482.1|1501190_1502192_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
VEE00483.1|1502365_1503451_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
VEE00484.1|1503499_1504165_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
VEE00485.1|1504175_1504553_+	bleomycin resistance protein	NA	NA	NA	NA	NA
VEE00486.1|1504697_1505624_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	1.5e-77
VEE00487.1|1505834_1506518_+	membrane protein	NA	NA	NA	NA	NA
VEE00488.1|1506517_1507444_+	membrane protein	NA	NA	NA	NA	NA
VEE00489.1|1507493_1508141_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
VEE00490.1|1508255_1508975_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
VEE00491.1|1508980_1509448_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	7.5e-41
VEE00492.1|1509450_1511784_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	1.4e-90
VEE00493.1|1511877_1512114_-	preprotein translocase subunit	NA	NA	NA	NA	NA
VEE00494.1|1512302_1513424_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEE00495.1|1513617_1515120_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.6	3.9e-75
VEE00496.1|1515309_1515903_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
VEE00497.1|1515899_1516727_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	3.9e-16
VEE00498.1|1516898_1517765_-	transcriptional regulator	NA	NA	NA	NA	NA
VEE00499.1|1518835_1519105_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00500.1|1519453_1519900_-	histidine kinase	NA	NA	NA	NA	NA
VEE00501.1|1519944_1520166_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00502.1|1520261_1521011_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00503.1|1521264_1521666_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00504.1|1521859_1522141_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00505.1|1522190_1522385_-|bacteriocin	bacteriocin-associated protein	bacteriocin	NA	NA	NA	NA
VEE00506.1|1522678_1522879_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
VEE00507.1|1522891_1523119_-	BlpM	NA	NA	NA	NA	NA
VEE00508.1|1523430_1523853_+|transposase	transposase	transposase	NA	NA	NA	NA
VEE00509.1|1523849_1523999_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
VEE00510.1|1524336_1524519_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
VEE00511.1|1524631_1524766_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
VEE00512.1|1525163_1525418_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE00513.1|1525723_1526200_-	phosphohydrolase	NA	NA	NA	NA	NA
VEE00514.1|1526220_1527117_-	GTP-binding protein Era	NA	NA	NA	NA	NA
VEE00515.1|1527236_1527644_-	diacylglycerol kinase	NA	NA	NA	NA	NA
VEE00516.1|1527624_1528122_-|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 10
LR134284	Streptococcus pyogenes strain NCTC8232 genome assembly, chromosome: 1	1900813	1570967	1577002	1900813		Streptococcus_phage(100.0%)	9	NA	NA
VEE00555.1|1570967_1571795_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	8.4e-128
VEE00556.1|1571868_1572225_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
VEE00557.1|1572524_1573154_+	copper homeostasis protein	NA	NA	NA	NA	NA
VEE00558.1|1573200_1573593_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
VEE00559.1|1573619_1574483_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	73.6	3.6e-113
VEE00560.1|1574487_1574811_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
VEE00561.1|1575215_1575455_-	Tpl protein	NA	NA	NA	NA	NA
VEE00562.1|1575473_1576349_-	DNA polymerase III subunit delta	NA	M1NSC1	Streptococcus_phage	41.7	9.1e-56
VEE00563.1|1576366_1577002_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
