assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636425.1_41800_F02	LR134272	Streptococcus pyogenes strain NCTC12060 genome assembly, chromosome: 1	1	762744-763242	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas9,cas1,cas2,csn2	DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	Type II-C,Type II-B,Type II-A	TGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	37,36,36	0	0	NA	NA	II-A:II-A:II-A	7,6,7	7	TypeII-C,TypeII-B,TypeII-A	DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	NA|214aa|up_8|LR134272.1_752207_752849_+,NA	NA|452aa|up_9|LR134272.1_750728_752084_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|LR134272.1_752207_752849_+	NA	NA|399aa|up_7|LR134272.1_752845_754042_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|LR134272.1_754051_754804_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|LR134272.1_754803_755568_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|LR134272.1_755567_756200_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1368aa|up_3|LR134272.1_756679_760783_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|LR134272.1_760782_761652_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|104aa|up_1|LR134272.1_761678_761990_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|LR134272.1_761979_762642_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|LR134272.1_763886_765719_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|526aa|down_1|LR134272.1_765905_767483_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|146aa|down_2|LR134272.1_767667_768105_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|LR134272.1_768234_769254_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|LR134272.1_769460_769886_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|LR134272.1_769912_770404_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|LR134272.1_770420_771230_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|LR134272.1_771226_772054_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|361aa|down_8|LR134272.1_772189_773272_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|191aa|down_9|LR134272.1_773265_773838_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
GCA_900636425.1_41800_F02	LR134272	Streptococcus pyogenes strain NCTC12060 genome assembly, chromosome: 1	2	941634-941735	2	CRISPRCasFinder	no		DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	NA,NA|262aa|down_6|LR134272.1_949565_950351_+,NA|63aa|down_8|LR134272.1_951670_951859_-	NA|83aa|up_9|LR134272.1_929349_929598_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|LR134272.1_929960_932279_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|LR134272.1_932808_934131_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|LR134272.1_934250_935486_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|LR134272.1_935855_936629_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|LR134272.1_936998_937835_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|LR134272.1_937850_938480_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|LR134272.1_938489_939131_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|LR134272.1_939237_939573_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|LR134272.1_939768_941583_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|LR134272.1_941758_942316_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|LR134272.1_942533_944036_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|LR134272.1_944098_945112_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|LR134272.1_945191_948302_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|LR134272.1_948486_948858_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|LR134272.1_948857_949556_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|LR134272.1_949565_950351_+	NA	NA|205aa|down_7|LR134272.1_950481_951096_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|63aa|down_8|LR134272.1_951670_951859_-	NA	NA|263aa|down_9|LR134272.1_951973_952762_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain
