assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636415.1_41825_A01	LR134273	Streptococcus equi subsp. equi strain NCTC12091 genome assembly, chromosome: 1	2	571472-572822	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Type I-C, Type I-U?,Type I-U	GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT,GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT,GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	19,20,19	20	TypeI-C,TypeI-U?,TypeI-U	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|84aa|up_9|LR134273.1_561757_562009_+,NA|30aa|up_8|LR134273.1_562008_562098_+,NA	NA|84aa|up_9|LR134273.1_561757_562009_+	NA	NA|30aa|up_8|LR134273.1_562008_562098_+	NA	NA|108aa|up_7|LR134273.1_562228_562552_+	pfam15597, Imm59, Immunity protein 59	cas3|818aa|up_6|LR134273.1_563178_565632_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|LR134273.1_565849_566593_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|628aa|up_4|LR134273.1_566592_568476_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|LR134273.1_568476_569325_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_2|LR134273.1_569326_569998_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|LR134273.1_569994_571020_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|LR134273.1_571030_571324_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|237aa|down_0|LR134273.1_573161_573872_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|224aa|down_1|LR134273.1_573885_574557_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|371aa|down_2|LR134273.1_574574_575687_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|LR134273.1_575955_576696_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|573aa|down_4|LR134273.1_576692_578411_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|363aa|down_5|LR134273.1_578450_579539_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|235aa|down_6|LR134273.1_579553_580258_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|163aa|down_7|LR134273.1_580517_581006_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|158aa|down_8|LR134273.1_581566_582040_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_9|LR134273.1_582180_582861_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCA_900636415.1_41825_A01	LR134273	Streptococcus equi subsp. equi strain NCTC12091 genome assembly, chromosome: 1	5	874482-874591	3	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	CTGACTTGATGACAGCTTATACTAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|183aa|up_4|LR134273.1_868237_868786_-,NA|96aa|up_3|LR134273.1_868778_869066_-,NA|152aa|up_2|LR134273.1_869065_869521_-,NA|126aa|up_1|LR134273.1_869772_870150_-,NA|713aa|down_5|LR134273.1_878755_880894_+,NA|41aa|down_6|LR134273.1_880894_881017_+	NA|655aa|up_9|LR134273.1_860921_862886_+	pfam05738, Cna_B, Cna protein B-type domain	NA|478aa|up_8|LR134273.1_862900_864334_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|up_7|LR134273.1_864414_865224_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|392aa|up_6|LR134273.1_865538_866714_+	pfam09028, Mac-1, Mac 1	NA|422aa|up_5|LR134273.1_866793_868059_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|183aa|up_4|LR134273.1_868237_868786_-	NA	NA|96aa|up_3|LR134273.1_868778_869066_-	NA	NA|152aa|up_2|LR134273.1_869065_869521_-	NA	NA|126aa|up_1|LR134273.1_869772_870150_-	NA	NA|1238aa|up_0|LR134273.1_870629_874343_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_0|LR134273.1_874631_875171_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|212aa|down_1|LR134273.1_875160_875796_+	pfam13490, zf-HC2, Putative zinc-finger	NA|232aa|down_2|LR134273.1_875923_876619_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_3|LR134273.1_876632_877310_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|478aa|down_4|LR134273.1_877315_878749_+	pfam08757, CotH, CotH kinase protein	NA|713aa|down_5|LR134273.1_878755_880894_+	NA	NA|41aa|down_6|LR134273.1_880894_881017_+	NA	NA|465aa|down_7|LR134273.1_881040_882435_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1098aa|down_8|LR134273.1_882573_885867_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1214aa|down_9|LR134273.1_885856_889498_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type
GCA_900636415.1_41825_A01	LR134273	Streptococcus equi subsp. equi strain NCTC12091 genome assembly, chromosome: 1	6	1402277-1402774	4,4,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGAACCATTCAATACAGCATAACTCTAAAACA,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	37,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	7,7,6	7	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA,NA|297aa|down_7|LR134273.1_1411259_1412150_-	NA|129aa|up_9|LR134273.1_1387736_1388123_-	pfam09148, DUF1934, Domain of unknown function (DUF1934)	NA|434aa|up_8|LR134273.1_1388203_1389505_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|270aa|up_7|LR134273.1_1389729_1390539_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|405aa|up_6|LR134273.1_1390538_1391753_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|412aa|up_5|LR134273.1_1391752_1392988_+	pfam02388, FemAB, FemAB family	NA|253aa|up_4|LR134273.1_1393196_1393955_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|399aa|up_3|LR134273.1_1394220_1395417_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|1049aa|up_2|LR134273.1_1396365_1399512_+	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module	NA|363aa|up_1|LR134273.1_1399805_1400894_-	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal	NA|157aa|up_0|LR134273.1_1400877_1401348_-	TIGR02950, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma factor, SigM family	csn2|225aa|down_0|LR134273.1_1403048_1403723_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|LR134273.1_1403715_1404060_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|LR134273.1_1404056_1404926_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1349aa|down_3|LR134273.1_1404925_1408972_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|108aa|down_4|LR134273.1_1409482_1409806_-	pfam15597, Imm59, Immunity protein 59	NA|162aa|down_5|LR134273.1_1409869_1410355_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|249aa|down_6|LR134273.1_1410498_1411245_-	pfam08929, DUF1911, Domain of unknown function (DUF1911)	NA|297aa|down_7|LR134273.1_1411259_1412150_-	NA	NA|141aa|down_8|LR134273.1_1412219_1412642_-	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase	NA|135aa|down_9|LR134273.1_1412831_1413236_-	pfam15599, Imm63, Immunity protein 63
