The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	320736	393664	2859840	capsid,portal,protease,holin,terminase,tail,integrase,head,transposase	Staphylococcus_phage(69.12%)	93	320625:320643	368044:368062
320625:320643	attL	AATCATACAAGGATGGGAT	NA	NA	NA	NA
VED77749.1|320736_321942_-|integrase	phage integrase family protein	integrase	A0A1X9H094	Staphylococcus_phage	97.5	1.7e-217
VED77752.1|322044_322695_-|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VED77755.1|323167_323602_-	lipoprotein	NA	A0A2K9VBS2	Staphylococcus_phage	98.6	1.2e-24
VED77758.1|323619_324090_-	phiSLT ORF153-like protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.4	5.3e-87
VED77761.1|324093_324423_-	phage repressor	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
VED77764.1|324583_324775_+	phage regulatory protein	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
VED77767.1|324862_325039_+	Uncharacterised protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
VED77770.1|325035_325266_-	phiSLT ORF78-like protein	NA	A0A0H3U2T9	Staphylococcus_phage	98.7	6.1e-36
VED77773.1|325322_326075_+	antirepressor	NA	S4SW96	Staphylococcus_phage	99.2	2.1e-138
VED77776.1|326090_326288_+	phage protein	NA	A7TWF5	Staphylococcus_phage	93.8	1.9e-22
VED77779.1|326433_326697_+	DNA-binding protein	NA	B7T0G2	Staphylococcus_virus	98.9	1.1e-44
VED77782.1|326709_326871_+	phage protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
VED77785.1|326973_327276_+	phage like protein	NA	A0A0F6N3N3	Staphylococcus_phage	68.0	1.0e-30
VED77788.1|327280_327541_+	phage protein	NA	A1KWZ6	Staphylococcus_virus	94.2	1.2e-40
VED77791.1|327550_327772_+	phage protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
VED77794.1|327764_328388_+	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	99.5	2.3e-114
VED77797.1|328387_328807_+	prophage L54a, single-stranded DNA binding protein	NA	Q4ZA54	Staphylococcus_virus	100.0	1.4e-62
VED77800.1|328820_329516_+	phage protein	NA	A0A0E3XBQ6	Staphylococcus_phage	93.9	1.6e-127
VED77803.1|329487_330288_+	phi PV83 orf 20-like protein	NA	Q4ZBE3	Staphylococcus_virus	98.5	8.7e-106
VED77806.1|330287_330644_+	phage protein	NA	Q4ZA51	Staphylococcus_virus	100.0	2.8e-64
VED77809.1|330640_331882_+	prophage L54a, replicative DNA helicase	NA	Q4ZA50	Staphylococcus_virus	100.0	8.8e-230
VED77812.1|331878_332094_+	hypothetical phage-related protein	NA	Q4ZA49	Staphylococcus_virus	98.6	1.1e-34
VED77815.1|332096_332318_+	putative phi ETA-like protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
VED77818.1|332327_332732_+	putative phi ETA-like protein	NA	G4KNP2	Staphylococcus_phage	99.3	6.2e-68
VED77821.1|332736_332922_+	Protein of uncharacterised function (DUF3113)	NA	A0A2H4JAM6	uncultured_Caudovirales_phage	100.0	5.4e-27
VED77824.1|332922_333294_+	PVL ORF-50-like family protein	NA	Q9MBR4	Staphylococcus_prophage	96.7	1.4e-50
VED77827.1|333294_333543_+	phage family protein	NA	A0A2I6PDI0	Staphylococcus_phage	95.1	4.0e-41
VED77831.1|333553_333763_+	Phage protein	NA	A0A059T5A6	Staphylococcus_phage	88.2	5.9e-30
VED77834.1|333765_334176_+	putative phage PVL protein	NA	A0A1P8CN10	Staphylococcus_phage	68.4	6.1e-47
VED77837.1|334175_334451_+	Phage protein	NA	Q4ZA41	Staphylococcus_virus	100.0	1.3e-45
VED77840.1|334443_334692_+	Phage protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
VED77843.1|334684_335221_+	dUTPase family protein	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	1.4e-94
VED77846.1|335257_335542_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED77849.1|335558_335765_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED77852.1|335761_335968_+	phage protein	NA	Q4ZCV6	Staphylococcus_virus	98.5	7.1e-20
VED77855.1|335964_336117_+	transcriptional activator rinB-like protein	NA	B7T0I1	Staphylococcus_virus	98.0	1.2e-19
VED77858.1|336184_336385_+	putative exported phage protein	NA	A0A2I6PEG6	Staphylococcus_phage	97.0	5.5e-25
VED77861.1|336433_338881_+	E family protein	NA	B7T0I3	Staphylococcus_virus	98.2	0.0e+00
VED77864.1|339221_339512_+	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
VED77867.1|339501_340860_+	putative DNA helicase	NA	A0A2K9VBW3	Staphylococcus_phage	98.7	3.4e-259
VED77870.1|340872_341310_+	phage regulatory protein	NA	A0A2I6PEN3	Staphylococcus_phage	99.3	3.0e-76
VED77873.1|341466_341781_+	HNH endonuclease family protein	NA	M9QQL5	Staphylococcus_phage	100.0	2.5e-56
VED77876.1|341908_342214_+|terminase	Phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
VED77879.1|342203_343895_+|terminase	terminase large subunit	terminase	Q4ZD20	Staphylococcus_virus	99.1	0.0e+00
VED77882.1|343899_345138_+|portal	portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.5	7.6e-234
VED77885.1|345121_345895_+|protease	phage protease	protease	A0A2I6PEQ7	Staphylococcus_phage	98.4	3.9e-135
VED77888.1|345906_347070_+|capsid	putative phage capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	99.0	1.5e-215
VED77891.1|347138_347417_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	98.9	6.0e-46
VED77894.1|347428_347761_+	phage protein	NA	M9QX19	Staphylococcus_phage	99.1	2.4e-57
VED77896.1|347757_348159_+	putative phiSLT protein	NA	A0A0K1LL98	Staphylococcus_phage	100.0	1.1e-67
VED77899.1|348159_348555_+	phage protein	NA	A0A0K1LKC0	Staphylococcus_phage	99.2	1.5e-66
VED77902.1|348589_349231_+|tail	major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	98.1	1.8e-117
VED77905.1|349322_349778_+|tail	major tail protein	tail	Q9B0D4	Staphylococcus_phage	98.0	1.2e-75
VED77911.1|349804_350155_+	putative gp48	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
VED77914.1|350196_350355_+	putative gp49	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
VED77917.1|350368_353416_+|tail	Phage tail length tape-measure protein	tail	A0A0K1LKC4	Staphylococcus_phage	98.5	0.0e+00
VED77920.1|353412_356568_+|tail	Phage tail length tape-measure protein	tail	M9QQM6	Staphylococcus_phage	98.8	0.0e+00
VED77923.1|356567_357392_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	1.6e-158
VED77926.1|357400_358984_+|tail	prophage endopeptidase tail family protein	tail	Q4ZD01	Staphylococcus_virus	99.2	4.3e-306
VED77929.1|358983_359274_+	putative gp53	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
VED77932.1|359289_361200_+	putative minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	99.4	0.0e+00
VED77935.1|361199_362666_+|tail	putative phage tail protein	tail	A0A2I6PDQ5	Staphylococcus_phage	97.5	1.8e-250
VED77938.1|362665_363055_+	phage-like protein	NA	Q4ZCZ7	Staphylococcus_virus	96.9	6.4e-62
VED77941.1|363047_363212_+	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
VED77944.1|363257_363557_+	hypothetical phage-related protein	NA	M9QRV2	Staphylococcus_phage	98.0	2.2e-30
VED77947.1|364105_364408_+|holin	holin	holin	B7T0L0	Staphylococcus_virus	94.0	3.8e-46
VED77950.1|364419_365874_+	amidase	NA	A0A0N6WMR3	Staphylococcus_phage	95.9	1.4e-279
VED77953.1|367387_367885_+	membrane protein	NA	NA	NA	NA	NA
VED77956.1|368444_369272_-	esterase/lipase-protein	NA	NA	NA	NA	NA
368044:368062	attR	AATCATACAAGGATGGGAT	NA	NA	NA	NA
VED77959.1|369344_370544_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA	NA
VED77962.1|370851_371853_+	Luciferase-like monooxygenase	NA	NA	NA	NA	NA
VED77965.1|371886_372219_+	Glycine cleavage system H protein	NA	NA	NA	NA	NA
VED77968.1|372219_373020_+	macro domain protein	NA	A0A2K9L8X2	Tupanvirus	44.4	3.1e-42
VED77971.1|373009_373954_+	SIR2 family protein	NA	NA	NA	NA	NA
VED77974.1|373931_374954_+	Lipoate-protein ligase A	NA	A0A2H4UVX5	Bodo_saltans_virus	28.1	8.8e-10
VED77977.1|375097_376444_-	PTS system sugar-specific permease component family protein	NA	NA	NA	NA	NA
VED77980.1|376458_376743_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
VED77983.1|376744_377188_-	PTS system, IIA component	NA	NA	NA	NA	NA
VED77987.1|377192_379148_-	Putative transcriptional antiterminator, BglG family / PTS system, mannitol/fructose-specific IIA component	NA	NA	NA	NA	NA
VED77990.1|379359_379779_+	MarR family regulatory protein	NA	NA	NA	NA	NA
VED77993.1|379885_381241_+	Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	NA	NA	NA	NA	NA
VED77996.1|381346_381790_+	mepB family protein	NA	NA	NA	NA	NA
VED77999.1|381869_383228_-	Glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
VED78002.1|383539_384466_+	glyoxalase family protein	NA	NA	NA	NA	NA
VED78005.1|384479_385541_+	luciferase-like monooxygenase	NA	NA	NA	NA	NA
VED78008.1|385554_386121_+	FMN reductase	NA	NA	NA	NA	NA
VED78011.1|386180_387176_-	membrane spanning protein	NA	NA	NA	NA	NA
VED78014.1|387456_388002_+	Ribosomal-protein-L7p-serine acetyltransferase	NA	NA	NA	NA	NA
VED78017.1|388266_389121_+	Ferrous iron transport periplasmic protein EfeO	NA	NA	NA	NA	NA
VED78020.1|389117_390347_+	Sec-independent exported protein	NA	NA	NA	NA	NA
VED78023.1|390327_392040_+	high-affinity iron permease	NA	NA	NA	NA	NA
VED78026.1|392123_392912_-	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.4	8.7e-50
VED78029.1|392935_393664_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
>prophage 2
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	432709	449479	2859840		Staphylococcus_phage(30.77%)	18	NA	NA
VED78165.1|432709_434176_+	Inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
VED78168.1|434200_435742_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
VED78171.1|435835_436972_-	Integrase	NA	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
VED78174.1|437055_437841_-	transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	58.6	1.2e-09
VED78177.1|437957_438185_+	phage protein	NA	NA	NA	NA	NA
VED78180.1|438230_438491_+	pathogenicity island protein	NA	NA	NA	NA	NA
VED78183.1|438537_438684_+	pathogenicity island protein	NA	NA	NA	NA	NA
VED78186.1|438901_439195_+	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
VED78189.1|439285_441649_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.1	1.7e-136
VED78192.1|442070_442415_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	4.2e-41
VED78195.1|442639_442846_+	pathogenicity island protein	NA	NA	NA	NA	NA
VED78198.1|442832_443891_+	pahtogenicity island protein	NA	A0A0K2CZ99	Paenibacillus_phage	25.4	3.9e-13
VED78201.1|444073_444565_+	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	2.3e-24
VED78203.1|444871_445576_-	toxic shock syndrome toxin-1	NA	NA	NA	NA	NA
VED78205.1|446036_446387_+	pathogenicity island protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	62.4	1.8e-18
VED78209.1|446505_447018_+	pathogenicity island protein	NA	Q4ZE83	Staphylococcus_phage	99.4	5.5e-69
VED78212.1|447789_448590_+	enterotoxin C-bovine	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.0	3.1e-50
VED78215.1|448756_449479_-	staphylococcal enterotoxin L	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.8e-26
>prophage 3
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	773093	780914	2859840		Hokovirus(16.67%)	10	NA	NA
VED79030.1|773093_774149_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VED79032.1|774148_774835_-	Response regulator SaeR	NA	NA	NA	NA	NA
VED79034.1|774809_775283_-	DoxX family protein	NA	NA	NA	NA	NA
VED79036.1|775625_776066_-	lipoprotein	NA	NA	NA	NA	NA
VED79038.1|776345_776930_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED79040.1|777028_777742_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
VED79042.1|777745_778165_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
VED79044.1|778166_778835_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VED79046.1|779185_779779_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
VED79048.1|779762_780914_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.5	9.2e-24
>prophage 4
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	792886	807322	2859840		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
VED79065.1|792886_793945_+	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	27.3	1.1e-20
VED79067.1|794342_794891_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VED79069.1|795493_796411_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.8	1.6e-07
VED79071.1|796692_798198_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VED79073.1|798537_799038_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	70.8	2.2e-51
VED79075.1|799057_799924_-	Integral membrane domain protein	NA	NA	NA	NA	NA
VED79077.1|800724_801123_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.7	4.3e-53
VED79079.1|801085_803191_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
VED79081.1|803308_804280_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
VED79083.1|804607_805621_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
VED79085.1|805607_806564_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
VED79087.1|806560_807322_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 5
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	1052124	1060597	2859840		Synechococcus_phage(33.33%)	8	NA	NA
VED79565.1|1052124_1052607_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	3.4e-20
VED79566.1|1052593_1054426_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	2.1e-46
VED79568.1|1054425_1054689_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VED79569.1|1054690_1055362_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VED79571.1|1055354_1057544_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.7	3.0e-140
VED79573.1|1057522_1059007_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
VED79575.1|1058999_1060028_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.2e-61
VED79577.1|1060030_1060597_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	1112036	1158849	2859840	capsid,holin,terminase,tail,integrase,head	Staphylococcus_virus(55.88%)	71	1110267:1110282	1136226:1136241
1110267:1110282	attL	ACGATAAGCTGTTGAT	NA	NA	NA	NA
VED79680.1|1112036_1112519_+	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
VED79682.1|1112580_1113720_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VED79684.1|1113846_1114404_+	YlbN-like protein	NA	NA	NA	NA	NA
VED79686.1|1114483_1114657_+	50S ribosomalprotein L32p	NA	NA	NA	NA	NA
VED79689.1|1114773_1116159_-|integrase	integrase	integrase	Q4ZA74	Staphylococcus_virus	100.0	3.6e-264
VED79691.1|1116366_1117047_-	pemK-like family protein	NA	A0A2H4PQQ5	Staphylococcus_phage	99.1	1.6e-121
VED79694.1|1117078_1117804_-	phage protein	NA	Q4ZA70	Staphylococcus_virus	99.6	7.6e-125
VED79696.1|1117821_1118523_-	repressor-like protein	NA	Q4ZA68	Staphylococcus_virus	99.5	3.1e-107
VED79698.1|1118718_1118934_+	phage-like protein	NA	Q4ZA66	Staphylococcus_virus	100.0	1.1e-31
VED79700.1|1118949_1119117_+	phage protein	NA	Q4ZA65	Staphylococcus_virus	100.0	2.6e-20
VED79702.1|1119167_1119650_-	phage protein	NA	Q4ZA64	Staphylococcus_virus	100.0	4.8e-83
VED79704.1|1120095_1120281_+	Helix-turn-helix	NA	A0A0H4IP57	Staphylococcus_phage	98.4	3.9e-25
VED79706.1|1120282_1121074_+	prophage L54a, antirepressor	NA	Q8SDX0	Staphylococcus_phage	99.6	2.5e-145
VED79708.1|1121074_1121299_+	phage protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
VED79710.1|1121338_1121515_+	phi PV83 orf 10-like protein	NA	B2ZYU7	Staphylococcus_phage	98.3	1.2e-23
VED79712.1|1121489_1121720_-	phage protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
VED79714.1|1121779_1121917_+	Uncharacterised protein	NA	Q4ZA61	Staphylococcus_virus	95.6	2.0e-15
VED79716.1|1121900_1122068_+	phage protein	NA	Q9MBS6	Staphylococcus_prophage	94.5	4.4e-20
VED79718.1|1122068_1122389_+	Uncharacterised protein	NA	Q9MBS5	Staphylococcus_prophage	100.0	1.6e-55
VED79720.1|1122480_1122741_+	phage protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
VED79722.1|1122750_1122972_+	phage protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
VED79724.1|1122964_1123588_+	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	99.5	2.3e-114
VED79726.1|1123587_1124007_+	prophage L54a, single-stranded DNA binding protein	NA	Q4ZA54	Staphylococcus_virus	100.0	1.4e-62
VED79728.1|1124020_1124695_+	phage protein	NA	Q4ZA53	Staphylococcus_virus	99.1	8.1e-129
VED79730.1|1124687_1125452_+	hypothetical phage-related protein	NA	A9CR67	Staphylococcus_phage	99.2	8.3e-138
VED79732.1|1125451_1125808_+	phage protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
VED79734.1|1125804_1127046_+	prophage L54a, replicative DNA helicase	NA	Q8SDW1	Staphylococcus_phage	98.8	4.5e-226
VED79736.1|1127042_1127258_+	hypothetical phage-related protein	NA	Q4ZAY6	Staphylococcus_virus	98.6	8.2e-35
VED79738.1|1127261_1127483_+	putative phi ETA-like protein	NA	Q4ZA48	Staphylococcus_virus	100.0	1.7e-35
VED79740.1|1127493_1127898_+	hypothetical phage-related protein	NA	Q4ZA47	Staphylococcus_virus	100.0	4.2e-72
VED79742.1|1127902_1128088_+	Protein of uncharacterised function (DUF3113)	NA	A0A2H4JAM6	uncultured_Caudovirales_phage	100.0	5.4e-27
VED79744.1|1128088_1128394_+	Uncharacterised protein	NA	Q4ZA45	Staphylococcus_virus	100.0	2.2e-49
VED79746.1|1128521_1128881_+	PVL ORF-50-like family	NA	B2ZYW3	Staphylococcus_phage	98.3	2.5e-60
VED79748.1|1128881_1129130_+	phage family protein	NA	A0A2I6PDI0	Staphylococcus_phage	97.6	3.0e-41
VED79750.1|1129143_1129554_+	putative phage PVL protein	NA	A0A1P8CN10	Staphylococcus_phage	69.1	2.1e-47
VED79752.1|1129553_1129829_+	Phage protein	NA	Q4ZA41	Staphylococcus_virus	100.0	1.3e-45
VED79754.1|1129821_1130070_+	Phage protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
VED79756.1|1130062_1130575_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZDG4	Staphylococcus_virus	97.1	9.9e-87
VED79758.1|1130641_1130929_+	phage protein	NA	Q4ZAB6	Staphylococcus_virus	94.7	6.4e-43
VED79760.1|1130921_1131158_+	phage protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
VED79762.1|1131147_1131324_+	transcriptional activator rinb-like protein	NA	Q4ZBK0	Staphylococcus_phage	94.7	2.1e-20
VED79764.1|1131324_1131690_+	phage protein	NA	I1W652	Staphylococcus_phage	99.2	4.8e-59
VED79766.1|1131690_1131837_+	phage protein	NA	A0A059T5A8	Staphylococcus_phage	97.9	3.7e-15
VED79768.1|1131860_1132283_+	phage transcriptional activator RinA	NA	S4V7K2	Staphylococcus_phage	97.1	3.0e-73
VED79770.1|1132470_1132965_+|terminase	Phage terminase, small subunit	terminase	B7T0C5	Staphylococcus_virus	98.8	6.6e-88
VED79772.1|1132967_1134263_+|terminase	Phage terminase, large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	98.6	1.5e-253
VED79774.1|1134273_1135809_+	phage-like protein	NA	Q4ZDV9	Staphylococcus_virus	97.8	3.1e-285
VED79776.1|1135815_1136811_+|head	phage putative head morphogenesis protein, SPP1 gp7 family Mu50B	head	E0Y3K7	Staphylococcus_virus	99.7	9.9e-184
1136226:1136241	attR	ATCAACAGCTTATCGT	NA	NA	NA	NA
VED79778.1|1136883_1137054_+	Uncharacterised protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
VED79780.1|1137162_1137783_+	phi 11 orf33	NA	B2ZYY4	Staphylococcus_phage	94.2	3.0e-69
VED79782.1|1137796_1138771_+|capsid,head	Phage head protein/Phage major capsid protein	capsid,head	E0Y3L0	Staphylococcus_virus	98.8	1.7e-180
VED79784.1|1138792_1139080_+	phage-like protein	NA	B7T0D3	Staphylococcus_virus	92.6	3.8e-43
VED79786.1|1139088_1139421_+	phi 11 orf36	NA	B7T0D4	Staphylococcus_virus	99.1	1.6e-53
VED79788.1|1139417_1139720_+	phage-like protein	NA	A4ZFB6	Staphylococcus_virus	96.0	1.7e-49
VED79790.1|1139719_1140067_+	phi 11 orf37	NA	B7T0D5	Staphylococcus_virus	100.0	2.4e-60
VED79792.1|1140078_1140462_+	phi 11 orf38	NA	B7T0D6	Staphylococcus_virus	100.0	3.5e-68
VED79794.1|1140479_1141061_+|tail	phage major tail protein, TP901-1 family; phi 11 orf39	tail	B7T0D7	Staphylococcus_virus	99.5	4.5e-104
VED79796.1|1141122_1141488_+	phi 11 orf40	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
VED79798.1|1141517_1141862_+	phi 11 orf41	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
VED79800.1|1141878_1145346_+	phage tape measure protein	NA	B7T0E0	Staphylococcus_virus	98.3	5.4e-245
VED79802.1|1145358_1146306_+	phi 11 orf43	NA	Q8SDT6	Staphylococcus_phage	99.0	8.9e-182
VED79804.1|1146314_1148216_+|tail	prophage endopeptidase tail family protein	tail	B7T0E2	Staphylococcus_virus	97.0	0.0e+00
VED79806.1|1148230_1150141_+	Putative major teichoic acid biosynthesis protein C	NA	B7T0E3	Staphylococcus_virus	97.8	0.0e+00
VED79808.1|1150140_1151964_+	phiETA ORF57-like protein	NA	Q4ZA88	Staphylococcus_virus	98.5	0.0e+00
VED79810.1|1151963_1152341_+	phage-like protein	NA	Q4ZA86	Staphylococcus_virus	99.2	2.6e-60
VED79812.1|1152341_1152524_+	phage protein	NA	Q4ZA85	Staphylococcus_virus	100.0	4.3e-29
VED79814.1|1152563_1152869_+	phage protein	NA	A0A059T679	Staphylococcus_phage	100.0	5.2e-43
VED79816.1|1153005_1154910_+	phage-related cell wall hydrolase	NA	B7T0E8	Staphylococcus_virus	98.4	0.0e+00
VED79818.1|1154922_1156935_+|tail	phage-related tail fiber	tail	Q4ZA81	Staphylococcus_virus	96.3	0.0e+00
VED79820.1|1156985_1157423_+|holin	holin, phage phi LC3 family	holin	A7YGY0	Staphylococcus_virus	97.2	5.9e-72
VED79822.1|1157403_1158849_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A059T7Q7	Staphylococcus_phage	97.1	5.7e-289
>prophage 7
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	1639032	1647344	2859840	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
VED80692.1|1639032_1639818_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	1.8e-18
VED80694.1|1639943_1640834_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	34.6	3.9e-30
VED80696.1|1640843_1642190_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	3.1e-55
VED80698.1|1642303_1643404_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
VED80700.1|1643406_1644084_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VED80702.1|1644214_1645321_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
VED80704.1|1645544_1647344_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 8
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	1716671	1725714	2859840	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VED80852.1|1716671_1717190_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
VED80854.1|1717211_1719485_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.3	1.1e-63
VED80856.1|1719687_1721967_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
VED80858.1|1722241_1722502_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
VED80860.1|1722520_1723660_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
VED80862.1|1723682_1724708_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VED80864.1|1724709_1725714_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	1849795	1927538	2859840	protease,bacteriocin,tRNA,integrase,transposase	Staphylococcus_phage(91.53%)	77	1915504:1915522	1934300:1934318
VED81077.1|1849795_1856353_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	96.5	1.6e-306
VED81079.1|1856679_1856991_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
VED81081.1|1857012_1859430_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
VED81083.1|1859717_1860899_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.2	4.7e-217
VED81085.1|1861008_1861962_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
VED81087.1|1861958_1862522_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
VED81089.1|1862641_1863043_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VED81091.1|1863613_1864441_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VED81093.1|1864674_1865676_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.0e-184
VED81095.1|1865797_1866262_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
VED81097.1|1866274_1867456_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
VED81099.1|1867466_1868099_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
VED81101.1|1868105_1869149_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	9.1e-196
VED81103.1|1869632_1871132_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
VED81105.1|1871653_1871968_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
VED81107.1|1871967_1873260_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.6e-224
VED81109.1|1873277_1873673_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	2.4e-72
VED81111.1|1874022_1874877_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VED81113.1|1875152_1875377_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VED81115.1|1875575_1876046_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
VED81117.1|1876158_1876602_+	comK family protein	NA	NA	NA	NA	NA
VED81119.1|1876588_1877032_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
VED81121.1|1877329_1877965_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VED81123.1|1878401_1879115_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
VED81125.1|1879372_1879675_+	membrane protein	NA	NA	NA	NA	NA
VED81127.1|1879930_1880296_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	2.4e-58
VED81129.1|1880292_1880646_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.2e-20
VED81131.1|1880895_1881729_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	6.0e-158
VED81133.1|1881940_1882849_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
VED81135.1|1882973_1884167_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
VED81137.1|1884537_1886130_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
VED81139.1|1886424_1887195_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	96.8	2.0e-139
VED81141.1|1887175_1887655_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.3e-84
VED81143.1|1887714_1887972_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
VED81145.1|1887968_1888970_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	4.1e-185
VED81147.1|1888974_1890453_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.9	9.3e-279
VED81150.1|1890611_1891094_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	8.4e-80
VED81152.1|1891405_1892020_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	84.3	3.7e-40
VED81154.1|1892100_1893096_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	4.3e-70
VED81156.1|1893171_1893798_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	82.2	1.1e-79
VED81158.1|1893838_1894180_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	2.3e-55
VED81161.1|1894280_1894853_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
VED81163.1|1895228_1896065_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VED81165.1|1896052_1896757_+	ABC transporter permease	NA	NA	NA	NA	NA
VED81168.1|1896870_1897317_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VED81170.1|1897398_1897623_-|transposase	transposase	transposase	NA	NA	NA	NA
VED81172.1|1898439_1898814_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VED81174.1|1898803_1899184_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VED81176.1|1899391_1899832_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VED81178.1|1899876_1901490_+	pathogenicity island protein	NA	NA	NA	NA	NA
VED81180.1|1901504_1901804_+	ESAT-6 family protein	NA	NA	NA	NA	NA
VED81182.1|1902040_1903219_-	Type I restriction-modification system, specificity subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.4	5.0e-41
VED81184.1|1903211_1904768_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	97.7	5.7e-287
VED81186.1|1905131_1905851_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	94.6	2.6e-125
VED81188.1|1905976_1906696_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	91.6	5.1e-121
VED81190.1|1906753_1907476_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	96.7	8.7e-129
VED81192.1|1907600_1907930_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.3	2.2e-55
VED81194.1|1908097_1908307_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	92.4	4.4e-25
VED81196.1|1909271_1909835_+	beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	62.4	5.6e-51
VED81198.1|1910308_1911019_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	89.8	6.3e-108
VED81200.1|1911015_1911777_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	94.9	2.5e-126
VED81202.1|1911773_1912466_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	97.4	1.4e-120
VED81204.1|1912488_1913862_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	94.5	9.7e-246
VED81206.1|1913871_1914390_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	97.7	1.9e-93
VED81208.1|1914405_1915650_-	Epidermin biosynthesis protein epiC	NA	A0A2H4PQH9	Staphylococcus_phage	88.6	1.2e-210
1915504:1915522	attL	ATCTAAAAATAATATTAAA	NA	NA	NA	NA
VED81210.1|1915642_1918636_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	92.4	0.0e+00
VED81212.1|1918700_1918844_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
VED81214.1|1919607_1920396_-	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.4	8.7e-50
VED81216.1|1920419_1921148_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
VED81218.1|1921242_1921386_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	76.6	9.9e-13
VED81220.1|1921628_1922612_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	98.2	2.6e-184
VED81222.1|1922613_1922880_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	4.9e-45
VED81224.1|1923012_1923549_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	9.7e-93
VED81226.1|1924276_1924726_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED81228.1|1924746_1925523_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
VED81230.1|1925918_1926413_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED81232.1|1926488_1927538_+|integrase	putative integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	89.4	1.3e-181
1934300:1934318	attR	ATCTAAAAATAATATTAAA	NA	NA	NA	NA
>prophage 10
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	1955062	2031974	2859840	capsid,portal,protease,holin,tRNA,terminase,tail,integrase,head,transposase	Staphylococcus_phage(62.5%)	92	1997729:1997743	2033531:2033545
VED81287.1|1955062_1955533_-|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	tRNA	NA	NA	NA	NA
VED81289.1|1955537_1956665_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
VED81291.1|1956815_1957544_-	Glutamine transport ATP-binding protein glnQ	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
VED81293.1|1957530_1958988_-	extracellular glutamine-binding protein	NA	NA	NA	NA	NA
VED81295.1|1959245_1960307_-	Regulatory protein	NA	NA	NA	NA	NA
VED81297.1|1969176_1969623_-	Peroxide stress regulator PerR, FUR family	NA	NA	NA	NA	NA
VED81299.1|1969719_1970679_-	D-3-phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
VED81301.1|1970675_1971131_-	Thiol peroxidase, Bcp-type	NA	NA	NA	NA	NA
VED81303.1|1971211_1972501_+	Glutamate-1-semialdehyde aminotransferase	NA	NA	NA	NA	NA
VED81305.1|1972742_1973888_+	integral membrane protein	NA	NA	NA	NA	NA
VED81307.1|1974077_1975814_-	Lipid A export ATP-binding/permease protein MsbA	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
VED81309.1|1976105_1976648_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VED81311.1|1976950_1977988_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
VED81313.1|1978139_1979117_+	membrane-bound metal-dependent hydrolase	NA	NA	NA	NA	NA
VED81315.1|1979377_1980214_-	Teichoic acid translocation permease protein TagG	NA	NA	NA	NA	NA
VED81318.1|1980222_1981740_-	Teichoic acid export ATP-binding protein TagH	NA	NA	NA	NA	NA
VED81320.1|1981754_1982069_-	transcriptional regulator	NA	NA	NA	NA	NA
VED81322.1|1982046_1982865_-	Regulatory protein recX	NA	NA	NA	NA	NA
VED81324.1|1983125_1983935_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
VED81326.1|1984228_1984957_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
VED81328.1|1984980_1985769_+	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.4	5.7e-49
VED81330.1|1985937_1986453_-	ThiJ/PfpI family protein	NA	NA	NA	NA	NA
VED81332.1|1986582_1986744_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VED81334.1|1987216_1988218_-	BcgI-like restriction enzyme subunit beta	NA	A0A1W6JNN3	Staphylococcus_phage	40.1	1.0e-55
VED81336.1|1988201_1990094_-	BcgI-like restriction enzyme subunit alpha	NA	A0A1W6JNK1	Staphylococcus_phage	70.9	5.6e-268
VED81338.1|1990605_1991574_-	Panton-Valentine leukocidin LukF-PV chain precursor	NA	Q9MBN2	Staphylococcus_prophage	100.0	2.0e-181
VED81340.1|1991575_1992502_-	leukocidin chain lukM precursor	NA	Q9MBN3	Staphylococcus_prophage	99.7	4.2e-176
VED81342.1|1992849_1993605_-	Autolysin	NA	Q9MBN4	Staphylococcus_prophage	100.0	3.4e-152
VED81344.1|1993616_1993871_-|holin	Phage holin	holin	Q9MBN5	Staphylococcus_prophage	100.0	5.3e-41
VED81346.1|1994409_1994640_-	phage protein	NA	D2JLG2	Staphylococcus_phage	98.7	2.6e-31
VED81348.1|1994763_1995051_-	phage protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
VED81350.1|1995097_1995250_-	phage protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
VED81352.1|1995239_1999025_-	phage minor structural protein	NA	D2JLF9	Staphylococcus_phage	97.3	0.0e+00
1997729:1997743	attL	ATTTTTCAACATCAT	NA	NA	NA	NA
VED81354.1|1999040_2000531_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	99.0	1.4e-295
VED81356.1|2000530_2005180_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A1V0E5H1	Staphylococcus_phage	97.7	0.0e+00
VED81358.1|2005417_2005864_-	Bacteriophage	NA	D2JLF5	Staphylococcus_phage	99.3	1.2e-72
VED81360.1|2005928_2006882_-|tail	phage major tail, phi13 family protein	tail	A7TWD0	Staphylococcus_phage	95.6	2.5e-168
VED81362.1|2006882_2007263_-	phi PVL orf 12-like protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
VED81364.1|2007259_2007637_-	gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	99.2	4.0e-61
VED81367.1|2007636_2007972_-|head,tail	phage head-tail adaptor	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
VED81369.1|2007958_2008291_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	D2JLF0	Staphylococcus_phage	99.1	6.2e-58
VED81371.1|2008299_2008458_-	Bacteriophage	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
VED81373.1|2008493_2009741_-|capsid	phage major capsid protein, HK97 family	capsid	Q8SDK8	Staphylococcus_phage	97.3	1.1e-208
VED81375.1|2009828_2010413_-|head,protease	prohead protease	head,protease	D2JLE7	Staphylococcus_phage	99.5	2.9e-106
VED81377.1|2010405_2011656_-|portal	portal protein	portal	D2JLE6	Staphylococcus_phage	99.5	3.7e-236
VED81379.1|2011661_2011862_-	phi PVL orf 3-like protein	NA	A0A1P8L6D3	Staphylococcus_phage	95.5	6.5e-26
VED81381.1|2011875_2013570_-	phage Terminase family protein	NA	D2JLE4	Staphylococcus_phage	99.6	0.0e+00
VED81383.1|2013572_2014040_-|terminase	phage terminase small subunit	terminase	D2JLE3	Staphylococcus_phage	98.7	1.6e-80
VED81386.1|2014168_2014522_-	phage endonuclease	NA	D2JLE2	Staphylococcus_phage	97.4	3.3e-65
VED81388.1|2014528_2014981_-	hypothetical phage-related protein	NA	D2JLE1	Staphylococcus_phage	98.7	3.9e-79
VED81390.1|2015095_2015557_-	Phage protein	NA	D2JLE0	Staphylococcus_phage	100.0	1.1e-68
VED81392.1|2015579_2015780_-	phage protein	NA	D2JLD9	Staphylococcus_phage	98.5	2.4e-28
VED81394.1|2015779_2016430_-	Uncharacterised protein	NA	D2JLD8	Staphylococcus_phage	98.1	3.8e-115
VED81396.1|2016588_2016738_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	1.4e-17
VED81398.1|2016734_2016941_-	Protein of uncharacterised function (DUF1381)	NA	B7T0C2	Staphylococcus_virus	95.6	6.0e-19
VED81400.1|2016977_2017319_-	dUTPase family protein	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	4.8e-53
VED81402.1|2017311_2017560_-	Phage protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
VED81404.1|2017552_2017828_-	Phage protein	NA	Q4ZA41	Staphylococcus_virus	100.0	1.3e-45
VED81406.1|2017827_2018238_-	putative phage PVL protein	NA	A0A1P8CN10	Staphylococcus_phage	68.4	6.1e-47
VED81408.1|2018240_2018450_-	Phage protein	NA	A0A059T5A6	Staphylococcus_phage	88.2	5.9e-30
VED81410.1|2018460_2018709_-	phage family protein	NA	A0A2I6PDI0	Staphylococcus_phage	95.1	4.0e-41
VED81412.1|2018709_2019081_-	PVL ORF-50-like family protein	NA	Q9MBR4	Staphylococcus_prophage	96.7	1.4e-50
VED81414.1|2019092_2019350_-	helix-turn-helix DNA binding protein	NA	Q9MBR5	Staphylococcus_prophage	100.0	5.4e-41
VED81416.1|2019350_2019536_-	PV83 orf 23-like protein	NA	Q9MBR6	Staphylococcus_prophage	96.7	1.7e-25
VED81418.1|2019540_2019945_-	hypothetical phage-related protein	NA	A7TWN5	Staphylococcus_phage	96.3	3.3e-69
VED81420.1|2019955_2020177_-	putative phi ETA-like protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
VED81422.1|2020179_2020395_-	hypothetical phage-related protein	NA	Q4ZA49	Staphylococcus_virus	100.0	6.3e-35
VED81425.1|2020391_2021633_-	prophage L54a, replicative DNA helicase	NA	Q4ZA50	Staphylococcus_virus	100.0	8.8e-230
VED81427.1|2021629_2021986_-	phage protein	NA	Q4ZA51	Staphylococcus_virus	100.0	2.8e-64
VED81429.1|2021985_2022741_-	hypothetical phage-related protein	NA	B7T0A7	Staphylococcus_virus	100.0	1.7e-143
VED81431.1|2022733_2023408_-	phage protein	NA	Q4ZA53	Staphylococcus_virus	98.2	2.0e-127
VED81433.1|2023421_2023850_-	phage single-stranded DNA-binding protein	NA	A0A2H4JHI1	uncultured_Caudovirales_phage	98.6	1.5e-59
VED81435.1|2023849_2024488_-	putative phage single-strand DNA binding protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
VED81437.1|2024487_2024967_-	phage protein	NA	Q9MBS3	Staphylococcus_prophage	100.0	8.1e-83
VED81439.1|2024981_2025077_-	phage protein	NA	Q9MBS4	Staphylococcus_prophage	100.0	1.4e-10
VED81441.1|2025094_2025244_-	phage protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.9e-14
VED81443.1|2025338_2025500_-	phage protein	NA	A9CR58	Staphylococcus_phage	96.2	3.3e-20
VED81445.1|2025483_2025714_-	phage protein	NA	Q9MBS7	Staphylococcus_prophage	100.0	1.5e-31
VED81447.1|2025784_2025997_+	Uncharacterised protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	56.5	3.2e-15
VED81449.1|2025924_2026089_-	phi PV83 orf 10-like protein	NA	A0A2H4J3T9	uncultured_Caudovirales_phage	61.1	9.4e-07
VED81451.1|2026104_2026854_-	putative phage anti-repressor protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	7.6e-136
VED81453.1|2026914_2027157_+	Uncharacterised protein	NA	Q4ZCA7	Staphylococcus_virus	50.0	2.8e-15
VED81455.1|2027104_2027392_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED81457.1|2027446_2027656_+	Uncharacterised protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
VED81459.1|2027648_2027789_-	phage protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
VED81461.1|2027803_2028247_-	hypothetical phage-related protein	NA	W5R971	Staphylococcus_phage	98.6	4.1e-73
VED81463.1|2028294_2028507_-	helix-turn-helix family protein	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
VED81465.1|2028658_2029390_+	CI-like repressor, phage associated	NA	M9NUL0	Staphylococcus_phage	72.2	5.6e-91
VED81467.1|2029401_2029548_+	phage protein	NA	U5U441	Staphylococcus_phage	100.0	4.3e-19
VED81469.1|2029544_2029730_+	phage protein	NA	A0A1X9H0K5	Staphylococcus_phage	98.4	2.5e-24
VED81471.1|2029765_2030749_+	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	92.0	9.9e-168
VED81473.1|2030927_2031974_+|integrase	phage integrase family protein	integrase	Q4ZDS8	Staphylococcus_virus	98.9	1.8e-199
2033531:2033545	attR	ATTTTTCAACATCAT	NA	NA	NA	NA
>prophage 11
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	2126126	2137633	2859840	integrase	Staphylococcus_phage(45.45%)	15	2118008:2118031	2140757:2140780
2118008:2118031	attL	CCCACCCCAACTTGCATTGTCTGT	NA	NA	NA	NA
VED81657.1|2126126_2126618_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
VED81659.1|2126783_2127842_-	pahtogenicity island protein	NA	NA	NA	NA	NA
VED81661.1|2127828_2128035_-	pathogenicity island protein	NA	NA	NA	NA	NA
VED81663.1|2128259_2128604_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
VED81665.1|2129274_2131647_-	Putative DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	41.3	6.7e-146
VED81670.1|2131738_2132038_-	bovine pathogenicity island protein Orf16	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
VED81676.1|2132038_2132263_-	pathogenicity island protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	3.4e-15
VED81682.1|2132252_2132402_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VED81688.1|2132398_2132716_-	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
VED81693.1|2132729_2133371_-	putative prophage antirepressor	NA	A0A2H4JB17	uncultured_Caudovirales_phage	82.2	2.3e-96
VED81698.1|2133374_2133587_-	putative transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	45.5	7.9e-06
VED81701.1|2133740_2134403_+	putative transcriptional regulator	NA	NA	NA	NA	NA
VED81703.1|2134415_2135588_+|integrase	mobile element-associated integrase, putative	integrase	A0A1W6JQD3	Staphylococcus_phage	98.5	3.5e-220
VED81705.1|2135656_2137273_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.9	1.2e-157
VED81707.1|2137348_2137633_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2140757:2140780	attR	CCCACCCCAACTTGCATTGTCTGT	NA	NA	NA	NA
>prophage 12
LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2859840	2569829	2618122	2859840	holin,transposase	Bacillus_phage(36.36%)	47	NA	NA
VED82537.1|2569829_2570525_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
VED82539.1|2570524_2571466_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
VED82541.1|2571482_2572118_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VED82543.1|2572114_2573341_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
VED82545.1|2574010_2574610_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
VED82547.1|2574789_2576427_+	Amino acid permease	NA	NA	NA	NA	NA
VED82549.1|2576733_2578086_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
VED82551.1|2578147_2579335_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
VED82553.1|2579729_2580506_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VED82555.1|2580498_2581161_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	W8CYL7	Bacillus_phage	34.5	1.7e-17
VED82557.1|2581505_2582582_-	endoglucanase M	NA	NA	NA	NA	NA
VED82559.1|2582937_2583204_-	addiction module toxin	NA	NA	NA	NA	NA
VED82561.1|2583203_2583461_-	prevent-host-death family protein	NA	NA	NA	NA	NA
VED82564.1|2583821_2584277_+	lipoprotein	NA	NA	NA	NA	NA
VED82566.1|2584444_2586022_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
VED82568.1|2586215_2586965_+	membrane protein	NA	NA	NA	NA	NA
VED82570.1|2587188_2588382_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
VED82572.1|2588393_2589143_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
VED82574.1|2589135_2589951_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	29.8	3.6e-14
VED82576.1|2589947_2590817_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VED82578.1|2590813_2591749_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VED82580.1|2591761_2593360_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
VED82582.1|2593502_2594804_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VED82584.1|2594796_2595615_-	nicotianamine synthase	NA	NA	NA	NA	NA
VED82586.1|2595625_2596447_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
VED82589.1|2597387_2597750_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED82591.1|2598013_2598832_-	short chain dehydrogenase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	4.4e-12
VED82593.1|2599067_2600606_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
VED82595.1|2600717_2601140_-|transposase	transposase	transposase	NA	NA	NA	NA
VED82597.1|2601595_2602015_-	membrane protein	NA	NA	NA	NA	NA
VED82599.1|2602265_2602961_-	Short-chain alcohol dehydrogenase	NA	W8CYX9	Bacillus_phage	36.5	8.6e-09
VED82601.1|2603260_2603542_+	IraB protein	NA	NA	NA	NA	NA
VED82603.1|2603801_2603993_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED82605.1|2604346_2604640_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED82607.1|2604642_2604969_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VED82609.1|2604968_2606324_-	Insertion sequenceATP-binding protein, putative	NA	NA	NA	NA	NA
VED82611.1|2606323_2607106_-	putative lipoprotein	NA	NA	NA	NA	NA
VED82614.1|2607349_2608126_-	lipoprotein	NA	NA	NA	NA	NA
VED82616.1|2608429_2611291_-	DNA/RNA helicase of DEAD/DEAH box family	NA	Q5YA94	Bacillus_phage	27.9	2.4e-28
VED82618.1|2611292_2611685_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
VED82620.1|2611987_2613625_+	Phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	37.7	6.4e-95
VED82622.1|2613908_2614175_+	exported protein	NA	NA	NA	NA	NA
VED82624.1|2614318_2614627_+	membrane protein	NA	NA	NA	NA	NA
VED82626.1|2614733_2614904_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED82628.1|2614947_2616141_-	Macrolide-efflux protein	NA	NA	NA	NA	NA
VED82630.1|2616317_2617184_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
VED82632.1|2617393_2618122_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
