assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	1	742116-742215	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGATCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|230aa|down_1|LR134271.1_744036_744726_-,NA|124aa|down_3|LR134271.1_745363_745735_+,NA|100aa|down_4|LR134271.1_745872_746172_+	NA|206aa|up_9|LR134271.1_731291_731909_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|LR134271.1_731924_732932_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|LR134271.1_733517_734315_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|LR134271.1_734675_735320_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|LR134271.1_736015_738166_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_4|LR134271.1_738245_738671_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|LR134271.1_738860_739577_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_2|LR134271.1_739576_740050_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_1|LR134271.1_740402_741047_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|LR134271.1_741162_742029_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|163aa|down_0|LR134271.1_743449_743938_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_1|LR134271.1_744036_744726_-	NA	NA|148aa|down_2|LR134271.1_744852_745296_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|124aa|down_3|LR134271.1_745363_745735_+	NA	NA|100aa|down_4|LR134271.1_745872_746172_+	NA	NA|181aa|down_5|LR134271.1_746251_746794_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_6|LR134271.1_746888_747455_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_7|LR134271.1_747456_747915_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_8|LR134271.1_747917_748601_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|292aa|down_9|LR134271.1_748771_749647_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	2	841054-841204	1	PILER-CR	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TCCAAATTCTCTTTGTTGGGGCCCACACCCCAACTCGCATTGCCTG	46	1	18	841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174|841159-841174	LR134271.1_257807-257792|LR134271.1_643836-643821|LR134271.1_841201-841216|LR134271.1_889358-889343|LR134271.1_1050699-1050714|LR134271.1_1050757-1050772|LR134271.1_1405461-1405446|LR134271.1_1480867-1480882|LR134271.1_1480925-1480940|LR134271.1_1480982-1480997|LR134271.1_1481039-1481054|LR134271.1_1681982-1681967|LR134271.1_1701572-1701587|LR134271.1_2397739-2397724|LR134271.1_2416875-2416860|LR134271.1_2853116-2853131|LR134271.1_2853174-2853189|LR134271.1_685571-685586	NA	2	2	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|LR134271.1_828333_829173_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|LR134271.1_829346_829997_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|LR134271.1_829993_830230_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|LR134271.1_830498_832484_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|LR134271.1_832491_835338_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|LR134271.1_835933_836866_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|LR134271.1_836871_837711_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|LR134271.1_837718_838204_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|LR134271.1_838211_839651_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|LR134271.1_839717_840653_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|LR134271.1_841478_842390_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|LR134271.1_842386_843382_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|LR134271.1_843492_844437_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|LR134271.1_845008_845596_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|LR134271.1_845777_847412_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|290aa|down_5|LR134271.1_847618_848488_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|LR134271.1_849223_849853_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|LR134271.1_850610_851624_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|LR134271.1_851676_852687_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|LR134271.1_852825_854016_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	4	934501-934582	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATTTCTACAGGCAATGCAAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|LR134271.1_923386_924883_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|LR134271.1_924875_925217_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|LR134271.1_925216_925645_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|LR134271.1_925637_928043_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|LR134271.1_928173_928557_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|LR134271.1_928620_929214_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|LR134271.1_929629_930007_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|LR134271.1_930367_931495_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|LR134271.1_931802_932993_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|LR134271.1_933101_934346_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|LR134271.1_934739_935669_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|LR134271.1_935910_937290_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|LR134271.1_937279_938485_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|LR134271.1_938834_940166_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|LR134271.1_941037_941613_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|LR134271.1_941617_942142_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|LR134271.1_942157_942733_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|LR134271.1_942892_946369_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|LR134271.1_946369_950023_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|LR134271.1_950188_951091_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	6	1066893-1066989	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GCATAAAAGCCCCTAACAACTAAAAGTTGTAAGG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|LR134271.1_1066998_1067133_-,NA|432aa|down_1|LR134271.1_1067284_1068580_+	NA|224aa|up_9|LR134271.1_1054690_1055362_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|LR134271.1_1055354_1057544_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|LR134271.1_1057522_1059007_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|LR134271.1_1058999_1060028_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|LR134271.1_1060030_1060597_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|LR134271.1_1060611_1062090_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|LR134271.1_1062111_1063359_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|LR134271.1_1063624_1064431_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|LR134271.1_1064423_1065824_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|LR134271.1_1065839_1066415_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|LR134271.1_1066998_1067133_-	NA	NA|432aa|down_1|LR134271.1_1067284_1068580_+	NA	NA|391aa|down_2|LR134271.1_1069003_1070176_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|LR134271.1_1070229_1070772_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|LR134271.1_1070925_1071192_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|LR134271.1_1071194_1072913_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|LR134271.1_1073147_1073381_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|LR134271.1_1073578_1074940_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|LR134271.1_1074936_1075956_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|LR134271.1_1076088_1076751_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	7	1118563-1118625	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATACGAAAATTCGTATATATTGGA	24	1	1	1118587-1118601	LR134271.1_1364888-1364902	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|130aa|up_9|LR134271.1_1111033_1111423_-,NA|72aa|down_0|LR134271.1_1118718_1118934_+,NA|56aa|down_1|LR134271.1_1118949_1119117_+,NA|161aa|down_2|LR134271.1_1119167_1119650_-,NA|75aa|down_5|LR134271.1_1121074_1121299_+,NA|59aa|down_6|LR134271.1_1121338_1121515_+,NA|77aa|down_7|LR134271.1_1121489_1121720_-,NA|46aa|down_8|LR134271.1_1121779_1121917_+	NA|130aa|up_9|LR134271.1_1111033_1111423_-	NA	NA|181aa|up_8|LR134271.1_1111492_1112035_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|161aa|up_7|LR134271.1_1112036_1112519_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|380aa|up_6|LR134271.1_1112580_1113720_-	PRK13670, PRK13670, nucleotidyltransferase	NA|186aa|up_5|LR134271.1_1113846_1114404_+	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|58aa|up_4|LR134271.1_1114483_1114657_+	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|462aa|up_3|LR134271.1_1114773_1116159_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|227aa|up_2|LR134271.1_1116366_1117047_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|242aa|up_1|LR134271.1_1117078_1117804_-	pfam14470, bPH_3, Bacterial PH domain	NA|234aa|up_0|LR134271.1_1117821_1118523_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|72aa|down_0|LR134271.1_1118718_1118934_+	NA	NA|56aa|down_1|LR134271.1_1118949_1119117_+	NA	NA|161aa|down_2|LR134271.1_1119167_1119650_-	NA	NA|62aa|down_3|LR134271.1_1120095_1120281_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|264aa|down_4|LR134271.1_1120282_1121074_+	pfam03374, ANT, Phage antirepressor protein KilAC domain	NA|75aa|down_5|LR134271.1_1121074_1121299_+	NA	NA|59aa|down_6|LR134271.1_1121338_1121515_+	NA	NA|77aa|down_7|LR134271.1_1121489_1121720_-	NA	NA|46aa|down_8|LR134271.1_1121779_1121917_+	NA	NA|56aa|down_9|LR134271.1_1121900_1122068_+	pfam06900, DUF1270, Protein of unknown function (DUF1270)
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	8	1953736-1953818	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAACATAGTGAAATTGGATCCTCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_0|LR134271.1_1952989_1953385_-,NA|51aa|down_0|LR134271.1_1954127_1954280_-	NA|979aa|up_9|LR134271.1_1940480_1943417_-	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|399aa|up_8|LR134271.1_1943406_1944603_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|115aa|up_7|LR134271.1_1945680_1946025_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|375aa|up_6|LR134271.1_1946093_1947218_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_5|LR134271.1_1947396_1947861_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|208aa|up_4|LR134271.1_1948216_1948840_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|371aa|up_3|LR134271.1_1948861_1949974_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_2|LR134271.1_1950136_1950958_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_1|LR134271.1_1951408_1952794_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_0|LR134271.1_1952989_1953385_-	NA	NA|51aa|down_0|LR134271.1_1954127_1954280_-	NA	NA|200aa|down_1|LR134271.1_1954304_1954904_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|down_2|LR134271.1_1955062_1955533_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|down_3|LR134271.1_1955537_1956665_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|down_4|LR134271.1_1956815_1957544_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|down_5|LR134271.1_1957530_1958988_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|down_6|LR134271.1_1959245_1960307_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_7|LR134271.1_1969176_1969623_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|320aa|down_8|LR134271.1_1969719_1970679_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_9|LR134271.1_1970675_1971131_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	9	2260978-2261067	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	TTACAACTTTAGTTGTTAGGGGCTCTTATGCA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|LR134271.1_2255852_2256083_-,NA|364aa|up_0|LR134271.1_2259872_2260964_+,NA|236aa|down_0|LR134271.1_2262263_2262971_-,NA|43aa|down_1|LR134271.1_2263255_2263384_-	NA|237aa|up_9|LR134271.1_2251459_2252170_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LR134271.1_2252290_2252734_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LR134271.1_2252934_2253348_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LR134271.1_2253805_2255179_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LR134271.1_2255852_2256083_-	NA	NA|313aa|up_4|LR134271.1_2256113_2257052_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LR134271.1_2257487_2258153_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LR134271.1_2258304_2258625_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LR134271.1_2258626_2259607_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LR134271.1_2259872_2260964_+	NA	NA|236aa|down_0|LR134271.1_2262263_2262971_-	NA	NA|43aa|down_1|LR134271.1_2263255_2263384_-	NA	NA|286aa|down_2|LR134271.1_2264432_2265290_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|LR134271.1_2265357_2266140_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|642aa|down_4|LR134271.1_2266618_2268544_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|668aa|down_5|LR134271.1_2268536_2270540_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|602aa|down_6|LR134271.1_2270691_2272497_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|LR134271.1_2273177_2274716_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|LR134271.1_2274750_2276883_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|LR134271.1_2276894_2277329_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	10	2382354-2382440	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCACATTATTGTATGCTG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_8|LR134271.1_2372816_2372981_+,NA|106aa|up_7|LR134271.1_2373215_2373533_+,NA|84aa|up_4|LR134271.1_2378657_2378909_+,NA	NA|303aa|up_9|LR134271.1_2371775_2372684_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|LR134271.1_2372816_2372981_+	NA	NA|106aa|up_7|LR134271.1_2373215_2373533_+	NA	NA|1056aa|up_6|LR134271.1_2373719_2376887_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|LR134271.1_2377003_2378269_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|LR134271.1_2378657_2378909_+	NA	NA|255aa|up_3|LR134271.1_2378900_2379665_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|LR134271.1_2379827_2380268_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|LR134271.1_2380260_2381472_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|LR134271.1_2381573_2381924_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|LR134271.1_2382622_2383645_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|LR134271.1_2383664_2384264_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|LR134271.1_2384270_2384504_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|LR134271.1_2384509_2384956_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|LR134271.1_2384969_2385455_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|LR134271.1_2385451_2386711_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|LR134271.1_2386773_2387268_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|LR134271.1_2387269_2387776_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|LR134271.1_2387806_2388811_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|LR134271.1_2388979_2389585_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	11	2596529-2596624	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAACTGTATTCCTCTATACCTGTAATTTT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|250aa|up_9|LR134271.1_2586215_2586965_+,NA|121aa|down_0|LR134271.1_2597387_2597750_-,NA|64aa|down_7|LR134271.1_2603801_2603993_-,NA|98aa|down_8|LR134271.1_2604346_2604640_-,NA|109aa|down_9|LR134271.1_2604642_2604969_-	NA|250aa|up_9|LR134271.1_2586215_2586965_+	NA	NA|398aa|up_8|LR134271.1_2587188_2588382_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|LR134271.1_2588393_2589143_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|LR134271.1_2589135_2589951_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|LR134271.1_2589947_2590817_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|LR134271.1_2590813_2591749_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|LR134271.1_2591761_2593360_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|LR134271.1_2593502_2594804_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|LR134271.1_2594796_2595615_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|LR134271.1_2595625_2596447_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|LR134271.1_2597387_2597750_-	NA	NA|273aa|down_1|LR134271.1_2598013_2598832_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|LR134271.1_2599067_2600606_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|LR134271.1_2600717_2601140_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|140aa|down_4|LR134271.1_2601595_2602015_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|232aa|down_5|LR134271.1_2602265_2602961_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|94aa|down_6|LR134271.1_2603260_2603542_+	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|64aa|down_7|LR134271.1_2603801_2603993_-	NA	NA|98aa|down_8|LR134271.1_2604346_2604640_-	NA	NA|109aa|down_9|LR134271.1_2604642_2604969_-	NA
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	12	2823669-2823747	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTCTATGTTGGGGCCCCGCCAA	24	1	19	2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723|2823693-2823723	LR134271.1_643845-643815|LR134271.1_841192-841222|LR134271.1_1050690-1050720|LR134271.1_1050748-1050778|LR134271.1_1405470-1405440|LR134271.1_1480858-1480888|LR134271.1_1480916-1480946|LR134271.1_1480973-1481003|LR134271.1_1481030-1481060|LR134271.1_2397748-2397718|LR134271.1_2416884-2416854|LR134271.1_2853107-2853137|LR134271.1_889367-889337|LR134271.1_1681991-1681961|LR134271.1_2853165-2853195|LR134271.1_556449-556419|LR134271.1_954648-954678|LR134271.1_1701563-1701593|LR134271.1_1789950-1789920	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|88aa|down_1|LR134271.1_2826607_2826871_-	NA|159aa|up_9|LR134271.1_2815117_2815594_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|up_8|LR134271.1_2815596_2816097_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_7|LR134271.1_2816331_2817099_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_6|LR134271.1_2817095_2817788_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_5|LR134271.1_2817804_2818467_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_4|LR134271.1_2819314_2819875_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|413aa|up_3|LR134271.1_2820038_2821277_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|up_2|LR134271.1_2821240_2821546_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|291aa|up_1|LR134271.1_2821542_2822415_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|up_0|LR134271.1_2822401_2823454_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|682aa|down_0|LR134271.1_2823844_2825890_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|88aa|down_1|LR134271.1_2826607_2826871_-	NA	NA|211aa|down_2|LR134271.1_2827407_2828040_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_3|LR134271.1_2828036_2828795_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_4|LR134271.1_2828791_2829496_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_5|LR134271.1_2829488_2830067_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|193aa|down_6|LR134271.1_2830063_2830642_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|338aa|down_7|LR134271.1_2830610_2831624_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|417aa|down_8|LR134271.1_2831639_2832890_-	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|205aa|down_9|LR134271.1_2832882_2833497_-	PRK13584, hisG, ATP phosphoribosyltransferase
GCA_900636335.1_40798_F01	LR134271	Staphylococcus aureus strain NCTC7988 genome assembly, chromosome: 1	13	2852988-2853073	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	2853018-2853043|2853018-2853043|2853018-2853043|2853018-2853043|2853018-2853043	LR134271.1_643875-643850|LR134271.1_1682023-1681998|LR134271.1_2216454-2216429|LR134271.1_2522105-2522080|LR134271.1_2551340-2551365	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|64aa|up_3|LR134271.1_2850207_2850399_+,NA	NA|192aa|up_9|LR134271.1_2843579_2844155_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|339aa|up_8|LR134271.1_2844318_2845335_+	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|271aa|up_7|LR134271.1_2845577_2846390_+	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|171aa|up_6|LR134271.1_2846685_2847198_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_5|LR134271.1_2847487_2848246_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_4|LR134271.1_2848235_2850116_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_3|LR134271.1_2850207_2850399_+	NA	NA|190aa|up_2|LR134271.1_2851118_2851688_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|LR134271.1_2851947_2852343_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|LR134271.1_2852410_2852764_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|LR134271.1_2853431_2854271_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|LR134271.1_2854313_2855033_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|LR134271.1_2855032_2856910_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|LR134271.1_2856976_2858356_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|116aa|down_4|LR134271.1_2858498_2858846_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|LR134271.1_2858972_2859110_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
