The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134252	Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2	276068	2728	52262	276068	transposase	Bacillus_phage(27.78%)	45	NA	NA
VED42495.1|2728_2917_-|transposase	putative transposase	transposase	Q9MCT5	Escherichia_phage	100.0	6.3e-15
VED42498.1|4066_4561_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED42502.1|4591_5158_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED42505.1|5154_5418_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED42508.1|5764_5914_+	CopG/Arc/MetJ family transcriptional regulator	NA	NA	NA	NA	NA
VED42511.1|5900_5999_+	plasmid stabilization system protein	NA	NA	NA	NA	NA
VED42514.1|6377_6812_-	copper-binding protein pcoE	NA	NA	NA	NA	NA
VED42517.1|6895_8431_-	two-component system, OmpR family, heavy metal sensor histidine kinase CusS	NA	W8CYF6	Bacillus_phage	25.1	1.8e-11
VED42520.1|8554_9109_-	two component heavy metal response transcriptional regulator	NA	W8CYM9	Bacillus_phage	34.1	3.5e-21
VED42523.1|9163_10093_-	copper resistance protein D	NA	NA	NA	NA	NA
VED42526.1|10097_10478_-	copper resistance protein C	NA	NA	NA	NA	NA
VED42529.1|10517_11414_-	Uncharacterized protein involved in copper resistance	NA	NA	NA	NA	NA
VED42532.1|11413_13231_-	copper-resistance protein, CopA family	NA	NA	NA	NA	NA
VED42536.1|13464_13914_+	copper-binding protein PcoE	NA	NA	NA	NA	NA
VED42539.1|14917_15169_-	Protein of uncharacterised function (DUF2933).	NA	NA	NA	NA	NA
VED42543.1|15209_17657_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-84
VED42546.1|17783_18224_-	Predicted metal-binding protein	NA	NA	NA	NA	NA
VED42549.1|18310_21457_-	cation efflux system protein SilA	NA	S5VTK5	Leptospira_phage	22.0	3.1e-61
VED42553.1|21467_22760_-	copper/silver efflux system membrane fusion protein CusB	NA	NA	NA	NA	NA
VED42556.1|22873_23227_-	copper/silver efflux system protein CusF	NA	NA	NA	NA	NA
VED42559.1|23255_24641_-	Copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA	NA
VED42562.1|24830_25511_+	transcriptional regulatory protein CusR	NA	W8CYM9	Bacillus_phage	35.6	2.1e-31
VED42565.1|25503_26979_+	sensor kinase CusS	NA	W8CYF6	Bacillus_phage	30.1	7.9e-28
VED42568.1|27229_27661_+	silver binding protein SilE	NA	NA	NA	NA	NA
VED42571.1|27804_28155_+	Uncharacterized protein conserved in bacteria	NA	A0A218MND9	uncultured_virus	53.3	1.2e-19
VED42574.1|28543_29452_-	HNH endonuclease	NA	NA	NA	NA	NA
VED42577.1|30114_31038_+|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	93.5	2.7e-167
VED42580.1|31078_31285_-	NADPH:quinone reductase and related Zn-dependent oxidoreductases	NA	NA	NA	NA	NA
VED42583.1|31798_32947_+	lac repressor	NA	C6ZCU4	Enterobacteria_phage	97.5	5.9e-188
VED42586.1|33068_36143_+	beta-D-galactosidase	NA	L0N6M2	Herpes_simplex_virus	96.8	0.0e+00
VED42589.1|36194_37448_+	galactoside permease	NA	NA	NA	NA	NA
VED42592.1|37513_37687_+	Galactoside O-acetyltransferase	NA	NA	NA	NA	NA
VED42595.1|37918_39301_+	putative porin	NA	NA	NA	NA	NA
VED42598.1|39431_40391_-	membrane protein	NA	NA	NA	NA	NA
VED42601.1|40387_40939_-	Protein of uncharacterised function (DUF3833)	NA	NA	NA	NA	NA
VED42604.1|41057_41981_-|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	92.8	5.1e-166
VED42607.1|42096_44235_+	ATP-dependent endonuclease of the OLD family-like protein	NA	NA	NA	NA	NA
VED42610.1|44231_46016_+	DNA helicase II	NA	A7KV33	Bacillus_phage	26.8	9.6e-20
VED42612.1|46363_46537_+|transposase	IS2 transposase orfA	transposase	Q76S41	Shigella_phage	92.7	2.1e-20
VED42615.1|46546_47515_-|transposase	transposase	transposase	A0A1S7J231	Thermus_phage	29.1	2.8e-13
VED42618.1|47586_47895_+|transposase	IS2 transposase orfA	transposase	Q76S41	Shigella_phage	91.4	3.1e-27
VED42621.1|47942_48731_+|transposase	putative transposase	transposase	Q9ZXG3	Shigella_phage	83.1	5.2e-127
VED42624.1|50122_50995_-	replication protein	NA	NA	NA	NA	NA
VED42628.1|51271_51541_-	replication protein	NA	NA	NA	NA	NA
VED42632.1|51680_52262_-	phospholipase D	NA	A0A1B2LRT6	Wolbachia_phage	34.0	6.5e-18
>prophage 2
LR134252	Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2	276068	107191	125752	276068	transposase,integrase	uncultured_Caudovirales_phage(36.36%)	23	99248:99262	127676:127690
99248:99262	attL	TGCCCGCTGCCGCTG	NA	NA	NA	NA
VED42835.1|107191_108532_-|transposase	transposase	transposase	NA	NA	NA	NA
VED42838.1|108620_110153_+	Transposase and inactivated derivatives	NA	A0A1B1P773	Bacillus_phage	39.8	3.1e-51
VED42841.1|110551_111037_-	acetyltransferase	NA	NA	NA	NA	NA
VED42843.1|111024_111291_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VED42846.1|111498_112998_+	Transposase for insertion sequences IS1326/IS1353	NA	NA	NA	NA	NA
VED42849.1|112994_113750_+	ATPase AAA	NA	U5N3V8	Enterobacteria_phage	33.9	2.4e-33
VED42852.1|114007_114331_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
VED42855.1|114332_115046_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	72.7	4.3e-96
VED42858.1|115054_115600_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
VED42862.1|115675_116038_+	arsenical resistance operon trans-acting repressor	NA	NA	NA	NA	NA
VED42865.1|116058_116883_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VED42868.1|116780_117434_-|integrase	integrase catalytic subunit	integrase	Q716C2	Shigella_phage	96.3	7.3e-127
VED42871.1|117646_117979_-|transposase	transposase IS3/IS911 family protein	transposase	Q716C1	Shigella_phage	97.0	1.5e-43
VED42874.1|118004_118535_-|integrase	integrase catalytic subunit	integrase	Q716C2	Shigella_phage	95.9	2.0e-98
VED42878.1|118747_119050_-|transposase	transposase IS3/IS911 family protein	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
VED42881.1|119203_120169_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VED42884.1|120293_120830_+	phosphinothricin N-acetyltransferase	NA	NA	NA	NA	NA
VED42887.1|120864_121290_-	Arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	1.6e-50
VED42890.1|121302_122592_-	Arsenical pump membrane protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.2	1.7e-172
VED42893.1|122639_124391_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VED42897.1|124408_124771_-	arsenical resistance operon trans-acting repressor ArsD	NA	NA	NA	NA	NA
VED42954.1|124818_125169_-	ArsR family transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	5.3e-23
VED42957.1|125386_125752_-|transposase	IS3 family transposase orfB	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	62.8	3.8e-40
127676:127690	attR	CAGCGGCAGCGGGCA	NA	NA	NA	NA
>prophage 3
LR134252	Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2	276068	141611	173179	276068	protease,transposase,integrase	Shigella_phage(21.05%)	34	142381:142440	182065:183293
VED43025.1|141611_142241_-	Protein of uncharacterised function (DUF2971)	NA	J9Q7Y9	Salmonella_phage	32.1	9.2e-10
142381:142440	attL	TGAATCGCCACGGGTTTAACAGACACCTCAGAGTCATTTAAGATGGCTTAAAGAGAGGTG	NA	NA	NA	NA
VED43029.1|142443_142722_+	ISEhe3 orfA	NA	U5P4I9	Shigella_phage	92.5	1.3e-32
VED43032.1|143048_143591_+|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	94.4	9.5e-96
VED43035.1|143816_144839_+	SOS mutagenesis and repair protein UmuC	NA	F1C5A5	Cronobacter_phage	59.9	2.9e-114
VED43038.1|145005_145257_+	Antitoxin YafN	NA	NA	NA	NA	NA
VED43041.1|145253_145541_+	addiction module antitoxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	47.4	1.3e-19
VED43048.1|145713_145917_+	Uncharacterised protein	NA	A0A2L1IV26	Escherichia_phage	69.2	1.5e-06
VED43054.1|145851_146229_-|transposase	IS1 transposase orfB	transposase	Q71TF0	Escherichia_phage	93.6	1.5e-63
VED43057.1|146632_147019_-	Excinuclease ABC subunit A	NA	NA	NA	NA	NA
VED43065.1|147406_147823_+|integrase	integrase catalytic subunit	integrase	Q716C2	Shigella_phage	86.1	1.1e-67
VED43074.1|148047_148311_-	Transposase	NA	NA	NA	NA	NA
VED43081.1|148325_148589_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43085.1|149155_149725_+	heat shock protein Hsp20	NA	NA	NA	NA	NA
VED43086.1|149830_152680_+	ATPase	NA	K4FB40	Cronobacter_phage	40.9	1.2e-128
VED43089.1|152679_152871_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43092.1|152931_154644_+|protease	ATP-dependent metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	38.0	1.0e-87
VED43095.1|154731_155190_+	heat shock protein Hsp20	NA	NA	NA	NA	NA
VED43098.1|155212_156127_+	YfdX protein	NA	NA	NA	NA	NA
VED43103.1|156229_157117_+	YfdX protein	NA	NA	NA	NA	NA
VED43106.1|157206_157818_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VED43110.1|157897_159043_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43114.1|159032_159473_+	thioredoxin 2	NA	A0A023NHA9	Dinoroseobacter_phage	34.7	5.8e-11
VED43117.1|159476_161192_+	glutathione-regulated potassium-efflux system protein kefC	NA	NA	NA	NA	NA
VED43120.1|161188_161686_+	Predicted membrane protein	NA	NA	NA	NA	NA
VED43123.1|161663_162611_+|protease	Zn-dependent protease with chaperone function	protease	NA	NA	NA	NA
VED43125.1|162635_163787_+|protease	serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.3	7.5e-26
VED43129.1|164011_164824_-|transposase	putative transposase	transposase	A0A077K814	Ralstonia_phage	59.5	6.4e-80
VED43132.1|164893_164992_-|transposase	IS5 transposase	transposase	NA	NA	NA	NA
VED43135.1|165330_166122_-|integrase	integrase	integrase	U5P429	Shigella_phage	45.0	2.3e-18
VED43139.1|166361_166739_+|transposase	IS1 transposase orfB	transposase	Q71TF0	Escherichia_phage	93.6	1.5e-63
VED43142.1|167821_168793_-	plasmid-partitioning protein SopB	NA	I3WF22	Macacine_betaherpesvirus	86.3	1.0e-148
VED43145.1|168792_169959_-	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.7	3.0e-224
VED43148.1|170710_171721_+	initiator RepB protein	NA	J9Q7H0	Salmonella_phage	54.3	3.9e-87
VED43151.1|172438_173179_-|integrase	integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	58.6	5.4e-25
182065:183293	attR	TGAATCGCCACGGGTTTAACAGACACCTCAGAGTCATTTAAGATGGCTTAAAGAGAGGTGCCCATGAGCGGTAAGCGTTATCCCGAAGAGTTTAAAATTGAAGCAGTCAAACAGGTTGTTGATCGCGGTTATTCTGTTGCCAGCGTTGCAACACGTCTCGATATCACCACCCACAGCCTTTACGCCTGGATAAAGAAGTACGGTTCAGATTCTTCCACTAATAAAGAACAGTCAGATGCTCAGGCCGAGATCCGCCGTCTCCAGAAAGAGCTGAAGCGGGTTACCGACGAACGGGACATATTAAAAAAAGCCGCGGCGTACTTCGCAAAGCTGTCCGACTGAGGTACGCCTTTATCCGTGACAACTCCTGTTGCTGGCCTGTTCGCCTGCTCTGTCGGGTGCTGGATGTTCATCCCAGTGGTTTTTACGCCTGGCTTCAGCAGCCGCATTCACAACGCCATCAGGCAGACCTGAGGCTGACAGGGCAGATTAAACAGTTCTGGCTGGAATCGGGATGCGTCTATGGTTATCGCAAAATCCATTTGGATCTGCGGGACAGCGGGCAACAGTGCGGAGTGAACAGAGTCTGGCGACTGATGAAACGTGTCGGGATAAAGGCTCAGGTCGGATACCGGAGCCCGCGGGCACGTAAAGGCGAGGCCAGTATCGTGTCGCCCAACAGGCTCCAGCGACAGTTCAATCCGGATGCTCCGGATGAGCGTTGGGTAACGGACATAACCTACATCAGGACCCACGAAGGCTGGCTGTATCTTGCCGTGGTTGTTGATCTGTTCTCACGCAAAATTATCGGCTGGTCCATGCAATCCCGGATGACAAAGGACATTGTCCTGAACGCACTGCTGATGGCTGTATGGCGGCGTAATCCCCAAAAACAGGTGCTGGTTCATTCGGATCAGGGCAGTCAGTACACAAGCCATGAGTGGCAGTCGTTCCTGAAATCACACGGCCTGGAGGGCAGCATGAGCCGTCGCGGTAACTGCCATGATAATGCGGTTGCAGAAAGCTTTTTCCAGTTGTTGAAACGAGAACGGATAAAGAAAAAGATCTACGGAACGCGGGAAGAAGCCCGCAGCGATATTTTTGATTACATCGAAATGTTTTATAACAGTAAGCGTCGGCATGGTTCCAGCGATCAGATGTCACCGACAGAATATGAAAACCAGTATTATCAACGGCTCGGAAGTGTCTAGATTATCCGTGGCGATTCA	NA	NA	NA	NA
>prophage 4
LR134252	Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2	276068	182732	228452	276068	transposase,integrase	Caulobacter_phage(16.67%)	52	181752:181767	232981:232996
181752:181767	attL	GAAGGGTTGCAGGAGG	NA	NA	NA	NA
VED43175.1|182732_183275_+|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	94.4	9.5e-96
VED43178.1|183400_183568_+	protein YjcC	NA	NA	NA	NA	NA
VED43181.1|184098_184632_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43184.1|184683_185034_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43187.1|185576_186158_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43190.1|186313_187315_+	Abi-like protein	NA	NA	NA	NA	NA
VED43193.1|187453_188032_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43196.1|188321_188585_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43199.1|188581_189148_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43202.1|189178_189673_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43205.1|189716_190085_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43208.1|190118_190322_+	gene expression modulator	NA	NA	NA	NA	NA
VED43211.1|190370_190628_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43214.1|190703_190958_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43217.1|191264_192110_-	Transposase and inactivated derivatives	NA	A0A1B1P773	Bacillus_phage	38.6	5.2e-40
VED43220.1|192444_192648_-	Transposase and inactivated derivatives	NA	NA	NA	NA	NA
VED43223.1|192776_193733_+|transposase	transposase	transposase	NA	NA	NA	NA
VED43225.1|194059_194212_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43228.1|194596_195220_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43230.1|195339_195747_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
VED43233.1|195842_196739_+	cation efflux system permease	NA	NA	NA	NA	NA
VED43236.1|196742_197255_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
VED43239.1|197276_198566_+|transposase	transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	40.4	9.5e-86
VED43247.1|198534_199587_-	peptidase M23B family protein	NA	NA	NA	NA	NA
VED43255.1|200448_201099_+	HAD family hydrolase	NA	NA	NA	NA	NA
VED43262.1|201126_202368_-	Tellurium resistance protein TerF	NA	NA	NA	NA	NA
VED43269.1|202455_203031_-	Tellurium resistance protein TerE	NA	K4JRX3	Caulobacter_phage	40.8	3.3e-30
VED43278.1|203110_203689_-	Tellurium resistance protein TerD	NA	A0A2P1N0L4	Streptomyces_phage	40.0	1.5e-06
VED43280.1|203739_204780_-	Tellurium resistance protein TerC	NA	K7QKE8	Escherichia_phage	46.8	5.5e-76
VED43283.1|204803_205259_-	tellurite resistance protein TerB	NA	NA	NA	NA	NA
VED43286.1|205281_206445_-	tellurium resistance protein TerA	NA	NA	NA	NA	NA
VED43289.1|206441_207026_-	tellurium resistance protein TerZ	NA	K4JRX3	Caulobacter_phage	29.0	5.9e-11
VED43291.1|207336_208395_+	carbamoyl phosphate synthase-like protein	NA	NA	NA	NA	NA
VED43294.1|208406_209549_+	Protein of uncharacterised function (DUF3706)	NA	A0A172Q0Y1	Acinetobacter_phage	28.5	2.4e-32
VED43297.1|209541_210315_+	Predicted hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VED43300.1|210316_211396_+	ATP-binding protein	NA	A0A172Q0S8	Acinetobacter_phage	33.0	3.6e-38
VED43303.1|211395_212352_+	Citrate lyase beta subunit	NA	NA	NA	NA	NA
VED43306.1|212361_212958_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43309.1|212897_213584_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43312.1|213586_214060_+	tellurium resistance protein TerW	NA	NA	NA	NA	NA
VED43314.1|214381_214720_+	tellurium resistance protein TerY	NA	NA	NA	NA	NA
VED43317.1|215043_215685_+	tellurium resistance protein terX	NA	NA	NA	NA	NA
VED43320.1|215685_216324_+	tellurium resistance protein	NA	NA	NA	NA	NA
VED43323.1|216418_217459_+	tellurium resistance protein	NA	NA	NA	NA	NA
VED43326.1|217458_219225_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED43330.1|219252_220407_+	protein kinase	NA	NA	NA	NA	NA
VED43333.1|222127_222775_-	Uncharacterized protein/domain associated with GTPases	NA	NA	NA	NA	NA
VED43336.1|222804_223560_-	Protein of uncharacterised function (DUF2971)	NA	NA	NA	NA	NA
VED43339.1|223993_224410_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43342.1|224442_224712_+|transposase	transposase mutator type	transposase	A0A218MNI5	uncultured_virus	39.7	1.3e-10
VED43345.1|224884_227716_-|transposase	transposon Tn3 transposase	transposase	Q1MVP5	Enterobacteria_phage	63.2	0.0e+00
VED43348.1|227879_228452_+|integrase	Resolvase/integrase Bin	integrase	Q1MVP4	Enterobacteria_phage	89.0	2.0e-83
232981:232996	attR	CCTCCTGCAACCCTTC	NA	NA	NA	NA
>prophage 1
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	1256656	1313064	5709996	tRNA,tail,integrase,portal,terminase,plate,capsid	Salmonella_phage(78.05%)	71	1267030:1267074	1301544:1301588
VED47589.1|1256656_1257199_+|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	95.0	1.1e-96
VED47591.1|1257611_1257815_+	phage transcriptional regulator, AlpA	NA	A0A1V0E8E5	Vibrio_phage	44.2	3.6e-08
VED47593.1|1258732_1259110_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED47595.1|1259140_1259635_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED47597.1|1259997_1261293_-	DNA strand transferase	NA	NA	NA	NA	NA
VED47599.1|1261634_1261820_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47601.1|1261816_1262146_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47604.1|1262135_1262477_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47606.1|1262469_1262883_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47608.1|1263116_1263305_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47610.1|1263301_1263580_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47612.1|1263782_1265282_-	Retron-type reverse transcriptase	NA	NA	NA	NA	NA
VED47614.1|1265642_1266863_-|integrase	prophage CP4-57 integrase	integrase	A0A1B5FPC6	Escherichia_phage	82.4	2.6e-194
1267030:1267074	attL	TGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
VED47616.1|1267159_1268239_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED47618.1|1268240_1269260_-|integrase	integrase	integrase	A0A1S6L016	Salmonella_phage	93.5	5.6e-190
VED47620.1|1269262_1269667_-	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	45.7	2.8e-28
VED47622.1|1270014_1270257_+	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
VED47624.1|1270289_1270799_+	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	86.4	2.2e-78
VED47626.1|1270806_1271007_+	Protein of uncharacterised function (DUF2724)	NA	A0A1S6L005	Salmonella_phage	67.2	1.3e-18
VED47628.1|1270970_1271309_+	putative prophage protein	NA	A0A218M4I7	Erwinia_phage	58.0	6.2e-29
VED47630.1|1271377_1271611_+	corresponds to STY3665 from Accession AL513382: Salmonella typhi CT18	NA	A0A1S6L021	Salmonella_phage	92.2	3.5e-31
VED47632.1|1271610_1271838_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	90.7	2.5e-34
VED47634.1|1271834_1272686_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	73.9	4.6e-113
VED47636.1|1272682_1275088_+	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	88.2	0.0e+00
VED47638.1|1275259_1275448_+	levan regulatory protein RlsC	NA	A0A1S6L006	Salmonella_phage	98.4	7.9e-26
VED47640.1|1275461_1275647_+	dinI-like protein in retron EC67	NA	E5G6M1	Salmonella_phage	83.6	2.1e-18
VED47642.1|1275980_1276199_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47644.1|1276198_1277041_+	Uncharacterised protein	NA	A0A0M4R2T6	Salmonella_phage	48.1	1.7e-59
VED47646.1|1277270_1278662_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47649.1|1278688_1279711_-|portal	putative phage portal protein	portal	E5G6M3	Salmonella_phage	87.9	1.1e-174
VED47651.1|1279710_1281465_-|terminase	terminase, ATPase subunit	terminase	A0A1S6KZW3	Salmonella_phage	92.3	0.0e+00
VED47653.1|1281613_1282447_+|capsid	capsid scaffold-like protein	capsid	A0A1S6KZW9	Salmonella_phage	75.5	2.3e-101
VED47655.1|1282463_1283528_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	94.0	5.6e-185
VED47657.1|1283531_1284182_+|terminase	small terminase subunit	terminase	E5G6M7	Salmonella_phage	86.1	3.6e-102
VED47659.1|1284278_1284743_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	86.4	6.0e-75
VED47661.1|1284742_1284946_+|tail	putative phage tail protein	tail	A0A1S6KZY4	Salmonella_phage	88.1	1.3e-29
VED47663.1|1284949_1285654_+	phage lysozyme	NA	E5G6N1	Salmonella_phage	83.4	6.6e-81
VED47665.1|1285903_1286041_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47667.1|1286037_1286466_+	putative regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	78.7	5.6e-51
VED47669.1|1286561_1286993_+|tail	tail fiber protein	tail	A0A1S6KZY0	Salmonella_phage	81.8	3.8e-63
VED47671.1|1286985_1287432_+|tail	bacteriophage tail completion protein	tail	A0A1S6L001	Salmonella_phage	71.9	7.6e-51
VED47673.1|1288210_1288783_+|plate	phage baseplate assembly-like protein	plate	E5G6N6	Salmonella_phage	72.8	1.2e-77
VED47675.1|1288779_1289142_+|plate	Phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.7	9.9e-49
VED47677.1|1289128_1290037_+|plate	baseplate assembly protein J (GpJ)	plate	E5G6N8	Salmonella_phage	66.6	9.9e-106
VED47679.1|1290029_1290632_+|tail	putative phage tail protein	tail	A0A1S6L000	Salmonella_phage	57.2	9.6e-57
VED47681.1|1290633_1290876_+|tail	Phage tail fiber protein	tail	NA	NA	NA	NA
VED47683.1|1291137_1292373_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47685.1|1292375_1293128_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47687.1|1293138_1294215_+|tail	phage tail collar domain-containing protein	tail	A0A2I8TVA9	Erwinia_phage	45.1	7.3e-31
VED47689.1|1294353_1295526_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	93.6	8.6e-211
VED47691.1|1295535_1296051_+|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	85.4	1.3e-81
VED47693.1|1296103_1296403_+|tail	putative phage tail protein E	tail	E5G6P9	Salmonella_phage	80.0	1.6e-33
VED47695.1|1296529_1297315_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	27.7	2.5e-20
VED47697.1|1297311_1299156_+|tail	phage tail-like protein	tail	E5FFG5	Burkholderia_phage	50.0	3.0e-77
VED47699.1|1299152_1299638_+	phage P2 GpU family protein	NA	E5G6Q2	Salmonella_phage	77.0	1.2e-57
VED47701.1|1299634_1300732_+	late control-like protein	NA	E5G6Q3	Salmonella_phage	83.6	4.3e-172
VED47703.1|1300798_1301017_+	late control-like protein	NA	Q53ZE7	Salmonella_virus	73.6	2.9e-27
VED47705.1|1301075_1301429_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED47707.1|1302048_1302531_-	tmRNA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	48.7	4.7e-30
1301544:1301588	attR	TGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
VED47709.1|1302684_1303122_+	Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W	NA	NA	NA	NA	NA
VED47711.1|1303111_1303435_+	UPF0125 protein yfjF	NA	NA	NA	NA	NA
VED47713.1|1303484_1303826_-	SmpA/OmlA domain-containing protein	NA	NA	NA	NA	NA
VED47715.1|1303973_1305635_-	DNA repair protein RecN	NA	NA	NA	NA	NA
VED47717.1|1305721_1306600_-	inorganic polyphosphate/ATP-NAD kinase	NA	NA	NA	NA	NA
VED47719.1|1306622_1307315_+	GrpE	NA	NA	NA	NA	NA
VED47721.1|1307439_1308681_-	Hemolysins and related proteins containing CBS domains	NA	NA	NA	NA	NA
VED47723.1|1308885_1309677_-	FIG001154: CcsA-related protein	NA	NA	NA	NA	NA
VED47725.1|1309844_1311209_+	Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)	NA	NA	NA	NA	NA
VED47727.1|1311449_1311698_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
VED47729.1|1311716_1312265_+	16S rRNA processing protein RimM	NA	NA	NA	NA	NA
VED47731.1|1312296_1313064_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 2
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	1391823	1398420	5709996		Faustovirus(16.67%)	9	NA	NA
VED47880.1|1391823_1393038_+	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	32.4	2.7e-34
VED47882.1|1393064_1393451_+	scaffold protein	NA	A0A218MKD1	uncultured_virus	77.3	2.0e-52
VED47884.1|1393466_1393790_+	iron-binding protein iscA	NA	A0A2H4N7N5	Lake_Baikal_phage	47.7	7.0e-22
VED47886.1|1393972_1394488_+	Chaperone protein HscB	NA	NA	NA	NA	NA
VED47888.1|1394563_1395655_+	Chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.1	1.5e-60
VED47890.1|1395764_1396256_+	chaperone protein HscA	NA	F2Y2E1	Organic_Lake_phycodnavirus	44.4	4.3e-23
VED47892.1|1396417_1396753_+	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
VED47894.1|1396754_1396955_+	Believed to be involved in assembly of Fe-S clusters	NA	NA	NA	NA	NA
VED47896.1|1397133_1398420_+	Peptidase B	NA	Q6GYZ8	Mycoplasma_phage	38.6	2.6e-35
>prophage 3
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	1817327	1824024	5709996		Planktothrix_phage(33.33%)	6	NA	NA
VED48496.1|1817327_1818191_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.0	2.6e-10
VED48497.1|1818201_1818975_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.8	1.0e-26
VED48498.1|1819013_1819907_-	Transcription regulator [contains diacylglycerol kinase catalytic domain]	NA	A0A1V0SBJ0	Catovirus	31.2	2.6e-13
VED48499.1|1820181_1821543_-	peptidase U32	NA	Q6DW11	Phage_TP	91.8	5.5e-201
VED48500.1|1821805_1822528_-	DNA-binding transcriptional regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	3.2e-30
VED48501.1|1822524_1824024_-	Sensory histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	2.8e-28
>prophage 4
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	2434048	2491200	5709996	terminase,tail,coat,integrase,lysis,transposase	Enterobacteria_phage(25.45%)	70	2438514:2438530	2500692:2500708
VED49446.1|2434048_2435074_-	DNA-binding transcriptional repressor PurR	NA	C6ZCU4	Enterobacteria_phage	32.2	8.2e-32
VED49448.1|2435621_2436788_+	Putative transport protein	NA	NA	NA	NA	NA
VED49450.1|2436827_2437409_-	Superoxide dismutase	NA	NA	NA	NA	NA
VED49452.1|2437529_2438414_-	Putative lipoprotein	NA	A0A217EQL1	Bacillus_phage	39.5	3.8e-17
2438514:2438530	attL	CTTTTGTATCTAAAGTG	NA	NA	NA	NA
VED49454.1|2438603_2439671_-|integrase	phage integrase family protein	integrase	Q9MCR4	Enterobacteria_phage	65.6	7.3e-132
VED49456.1|2439932_2440172_-	bacteriophage protein	NA	M9P0E0	Enterobacteria_phage	71.8	1.1e-24
VED49458.1|2440179_2440488_-	Uncharacterised protein	NA	I6PD68	Cronobacter_phage	57.8	5.0e-25
VED49460.1|2440671_2441016_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49462.1|2441050_2441254_-	recombinase, RecT family protein	NA	H6WRX0	Salmonella_phage	79.1	1.5e-25
VED49464.1|2441258_2442140_-	recombinase, RecT family protein	NA	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	65.9	1.0e-75
VED49466.1|2442153_2443731_-	putative exodeoxyribonuclease VIII	NA	H6WRX1	Salmonella_phage	69.1	3.0e-182
VED49468.1|2443917_2444196_+	ISEhe3 orfA	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
VED49470.1|2444522_2445065_+|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	95.0	1.1e-96
VED49472.1|2445080_2446262_-	exodeoxyribonuclease VIII-like protein	NA	K7PJT5	Enterobacteria_phage	46.3	3.9e-78
VED49474.1|2446399_2446558_-	Uncharacterised protein	NA	K7P7H7	Enterobacteria_phage	61.5	3.4e-14
VED49476.1|2446566_2446758_-	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA	NA
VED49478.1|2446873_2447017_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49480.1|2447498_2447714_+	protein YdhZ	NA	I6R0R9	Salmonella_phage	92.4	4.1e-26
VED49482.1|2448309_2448441_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49484.1|2448595_2449009_-	Uncharacterised protein	NA	K7PJT6	Enterobacteria_phage	75.2	2.5e-48
VED49486.1|2449187_2449574_-	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	88.1	1.5e-55
VED49488.1|2449677_2449911_+	Uncharacterized protein conserved in bacteria, prophage-related	NA	A0A0M4QX15	Salmonella_phage	81.8	3.9e-30
VED49490.1|2449913_2450450_+	regulatory protein CII from bacteriophage origin	NA	M9NZI6	Enterobacteria_phage	66.9	1.2e-61
VED49492.1|2450579_2451374_+	PRTRC system ParB family protein	NA	C7BGF1	Burkholderia_phage	50.8	1.8e-63
VED49494.1|2451680_2452598_+	Uncharacterised protein	NA	Q8HA96	Salmonella_phage	51.7	1.5e-24
VED49496.1|2452600_2453350_+	DNA replication protein DnaC	NA	H6WRX8	Salmonella_phage	81.1	8.7e-116
VED49498.1|2453357_2453624_+	Bacterial protein of uncharacterised function (DUF977)	NA	H6WRX9	Salmonella_phage	36.6	4.7e-08
VED49500.1|2453620_2453713_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49502.1|2453709_2454300_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49504.1|2454481_2455180_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	69.0	1.1e-88
VED49506.1|2455266_2455587_+	DNA-binding transcriptional repressor ArsR	NA	A0A2H4J145	uncultured_Caudovirales_phage	44.8	5.5e-19
VED49508.1|2455632_2456922_+	arsenical pump membrane protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	71.1	2.9e-167
VED49510.1|2456934_2457360_+	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.0	4.0e-49
VED49512.1|2457723_2457957_+	DNA-damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	72.7	2.2e-25
VED49514.1|2458199_2458316_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49516.1|2458351_2458948_+	Protein of uncharacterised function (DUF1367)	NA	K7PKS6	Enterobacteria_phage	78.6	7.2e-89
VED49518.1|2458947_2459154_+	Uncharacterised protein	NA	H6WRY8	Salmonella_phage	68.2	1.7e-21
VED49520.1|2459449_2459809_+	endodeoxyribonuclease RusA	NA	K7P6W0	Enterobacteria_phage	63.8	3.2e-39
VED49522.1|2459805_2459928_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49524.1|2459924_2460746_+	putative late gene regulator	NA	K7P7B9	Enterobacteria_phage	75.8	4.4e-105
VED49526.1|2460993_2461218_+|lysis	lysis S family protein	lysis	M9NZI9	Enterobacteria_phage	87.8	6.3e-30
VED49528.1|2461195_2461690_+	lysozyme from lambdoid prophage DLP12	NA	M9P0E5	Enterobacteria_phage	88.4	9.3e-82
VED49530.1|2461686_2462148_+|lysis	bacteriophage lysis protein	lysis	M9NYX9	Enterobacteria_phage	64.7	1.9e-44
VED49532.1|2462351_2462576_+	Uncharacterised protein	NA	A0A2H4J182	uncultured_Caudovirales_phage	66.2	1.2e-20
VED49534.1|2463564_2464086_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VED49536.1|2464227_2464464_+	Protein of uncharacterised function (DUF2560)	NA	A0A286N2R1	Klebsiella_phage	65.4	3.4e-18
VED49538.1|2464541_2465546_+|terminase	terminase small subunit	terminase	Q5QF76	Pseudomonas_virus	43.3	2.7e-35
VED49540.1|2465523_2466828_+	Terminase-like family.	NA	A0A1B1P9C9	Acinetobacter_phage	60.0	8.8e-148
VED49542.1|2466832_2468239_+	Uncharacterised protein	NA	G8C7P4	Escherichia_phage	69.6	9.4e-188
VED49544.1|2468240_2469353_+	Phage Mu protein F like protein.	NA	I6PD76	Cronobacter_phage	54.7	1.1e-109
VED49546.1|2469458_2470223_+	Uncharacterised protein	NA	G8C7P6	Escherichia_phage	61.8	2.2e-82
VED49548.1|2470310_2471447_+|coat	P22 coat protein - gene protein 5	coat	G8C7P7	Escherichia_phage	75.1	1.7e-155
VED49550.1|2471489_2471729_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49552.1|2471732_2472143_+	Uncharacterised protein	NA	A0A0H5AUF0	Pseudomonas_phage	41.2	1.0e-09
VED49554.1|2472364_2472748_+	Uncharacterised protein	NA	A0A0S2SYG4	Pseudomonas_phage	44.4	3.5e-20
VED49556.1|2472749_2473301_+	Uncharacterised protein	NA	G8C7Q1	Escherichia_phage	38.1	3.9e-28
VED49558.1|2473297_2473690_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49560.1|2473714_2474887_+	Bacterial Ig-like domain (group 2)	NA	A0A059VG08	Pseudomonas_phage	39.6	7.1e-56
VED49562.1|2474942_2475425_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49564.1|2476817_2480174_+|tail	prothage tail length tape measure	tail	A0A2H4J107	uncultured_Caudovirales_phage	30.7	5.9e-95
VED49566.1|2480173_2480647_+	alkanesulfonate ABC transporter permease	NA	A0A286S298	Klebsiella_phage	67.1	3.4e-57
VED49568.1|2480633_2481116_+	Domain of uncharacterised function (DUF1833)	NA	A0A286S2B1	Klebsiella_phage	75.0	7.2e-63
VED49570.1|2481125_2481506_+	COG2116: Formate/nitrite family of transporters	NA	A0A286S2A6	Klebsiella_phage	81.7	6.9e-61
VED49572.1|2481502_2484583_+	Uncharacterised protein	NA	A0A286S259	Klebsiella_phage	66.5	0.0e+00
VED49574.1|2484660_2486268_+	Uncharacterised protein	NA	A0A2H4N7A3	Pectobacterium_phage	48.7	3.4e-125
VED49576.1|2486308_2487289_+|transposase	putative transposase	transposase	Q38213	Escherichia_phage	99.7	1.6e-186
VED49578.1|2487441_2489373_-	Uncharacterised protein	NA	A0A0S1S0B7	Acinetobacter_phage	44.5	2.0e-103
VED49580.1|2489453_2490014_+	DNA-invertase	NA	A0A286S1P7	Klebsiella_phage	92.3	1.7e-87
VED49582.1|2490296_2490569_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49584.1|2490966_2491200_+	DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	53.9	1.6e-15
2500692:2500708	attR	CTTTTGTATCTAAAGTG	NA	NA	NA	NA
>prophage 5
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	2632296	2687649	5709996	head,integrase,lysis,plate	Salmonella_phage(13.56%)	85	2635628:2635643	2666996:2667011
VED49859.1|2632296_2633718_-	Anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	49.0	7.7e-121
VED49861.1|2633866_2634130_-	protein YnfD	NA	NA	NA	NA	NA
VED49863.1|2634233_2634944_+	Hypothetical UPF0257 lipoprotein ynfC precursor	NA	NA	NA	NA	NA
VED49865.1|2634937_2635498_-	Spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VED49867.1|2635568_2635910_-	putative secreted protein	NA	NA	NA	NA	NA
2635628:2635643	attL	AGTAGGCGTTGACGTT	NA	NA	NA	NA
VED49869.1|2636058_2636385_+	Protein of uncharacterised function UPF0060	NA	A0A218MNG8	uncultured_virus	52.9	3.5e-21
VED49871.1|2636608_2637823_+	starvation-sensing protein rspA	NA	Q6A202	Oenococcus_phage	29.7	4.8e-47
VED49873.1|2637833_2638838_+	dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	37.0	4.7e-08
VED49875.1|2638889_2639018_+	metabolite/H+ symporter, major facilitator superfamily (MFS)	NA	NA	NA	NA	NA
VED49877.1|2639020_2640301_-|integrase	integrase family protein	integrase	Q8W658	Enterobacteria_phage	60.0	5.8e-152
VED49879.1|2640337_2640619_-	putative phage excisionase	NA	A0A286S2A4	Klebsiella_phage	54.9	1.0e-16
VED49882.1|2640634_2640874_-	Uncharacterised protein	NA	H6WZF9	Escherichia_phage	51.3	3.2e-11
VED49884.1|2640873_2641095_-	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA	A0A0N7C211	Escherichia_phage	52.2	5.3e-13
VED49886.1|2641091_2641856_-	Uncharacterised protein	NA	R9VWB9	Serratia_phage	58.4	3.2e-73
VED49888.1|2641852_2642068_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49890.1|2642064_2643141_-	Modification methylase HhaI	NA	Q858D4	Salmonella_phage	68.5	1.5e-140
VED49892.1|2643425_2643728_-	Adenine DNA methyltransferase, phage-associated	NA	A0A193GYV6	Enterobacter_phage	90.8	1.0e-51
VED49894.1|2643724_2644153_-	Uncharacterised protein	NA	M9NYX4	Enterobacteria_phage	80.3	1.7e-60
VED49896.1|2644149_2644830_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	92.9	1.3e-123
VED49899.1|2644826_2645558_-	RecT protein	NA	U6C6J0	Ralstonia_phage	64.1	6.2e-58
VED49901.1|2645687_2645972_-	Uncharacterised protein	NA	G8C7T1	Escherichia_phage	70.2	1.2e-33
VED49903.1|2645979_2646951_-	Uncharacterised protein	NA	A0A077KCC0	Edwardsiella_phage	76.3	2.3e-39
VED49905.1|2647028_2647223_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49907.1|2647215_2647326_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49909.1|2647322_2647568_-	Uncharacterised protein	NA	B5WZV1	Pseudomonas_phage	46.2	8.2e-07
VED49911.1|2647564_2647681_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49913.1|2647677_2648469_-	pentapeptide repeat	NA	I6S1T3	Salmonella_phage	67.9	3.2e-28
VED49915.1|2648785_2649112_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49917.1|2649221_2649650_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49919.1|2649692_2650346_-	P22 repressor protein c2	NA	K7PGR7	Enterobacteria_phage	63.3	2.0e-71
VED49921.1|2650460_2650679_+	helix-turn-helix domain-containing protein	NA	A0A1P8DTF8	Proteus_phage	50.7	1.1e-13
VED49923.1|2650719_2650941_+	bacteriophage CII family protein	NA	NA	NA	NA	NA
VED49925.1|2651075_2651804_+	PaaX family transcriptional regulator	NA	H9C164	Pectobacterium_phage	73.0	1.6e-37
VED49927.1|2651800_2652580_+	replication P family protein	NA	A0A193GYX1	Enterobacter_phage	63.6	6.3e-93
VED49929.1|2652576_2652882_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49931.1|2652878_2653208_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49933.1|2653555_2653768_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49935.1|2653764_2653962_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49937.1|2653958_2654165_+	restriction alleviation protein, Lar family	NA	NA	NA	NA	NA
VED49939.1|2654154_2654754_+	Uncharacterised protein	NA	A0A220NQV2	Salmonella_phage	44.1	1.2e-19
VED49941.1|2654753_2655107_+	Uncharacterised protein	NA	U5PWL3	Acinetobacter_phage	33.0	5.9e-06
VED49943.1|2655106_2655400_+	Uncharacterised protein	NA	Q6UAT9	Klebsiella_phage	84.5	1.5e-42
VED49945.1|2655396_2656671_+	Protein of uncharacterised function (DUF551)	NA	A0A248SKW5	Klebsiella_phage	78.7	4.7e-53
VED49947.1|2656802_2657060_+	DNA polymerase III subunit theta	NA	Q71T70	Escherichia_phage	80.0	1.4e-25
VED49949.1|2657259_2657499_+	NinB family protein	NA	A0A1R3Y605	Salmonella_virus	42.6	1.8e-06
VED49951.1|2657504_2657675_+	NinB family protein	NA	Q8VNP6	Enterobacteria_phage	52.9	3.9e-08
VED49953.1|2657710_2657881_+	protein NinE-like protein from lambdoid prophage DLP12	NA	NA	NA	NA	NA
VED49955.1|2657873_2658500_+	bacteriophage lambda NinG family protein	NA	H6WRY9	Salmonella_phage	43.4	3.0e-37
VED49957.1|2658496_2658637_+	Gifsy-1 Prophage protein	NA	NA	NA	NA	NA
VED49959.1|2658633_2659323_+	phage antitermination protein Q	NA	I6PDF8	Cronobacter_phage	55.4	8.7e-62
VED49961.1|2659692_2659908_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49963.1|2660030_2660183_+	Uncharacterised protein	NA	K7PGZ9	Enterobacteria_phage	85.7	3.2e-09
VED49965.1|2660272_2660845_+	phage lysozyme	NA	K7P7Q3	Enterobacteria_phage	83.2	1.1e-89
VED49967.1|2660844_2661312_+|lysis	bacteriophage lysis protein	lysis	Q76H63	Enterobacteria_phage	77.4	7.2e-60
VED49969.1|2661778_2662426_+	Uncharacterised protein	NA	I6S676	Salmonella_phage	77.8	1.4e-98
VED49993.1|2662457_2662943_+	phage protein	NA	H9C190	Pectobacterium_phage	78.9	4.8e-67
VED49995.1|2662944_2664621_+	Transposase and inactivated derivatives	NA	H9C191	Pectobacterium_phage	74.4	3.9e-249
VED49997.1|2664621_2666142_+	phage-associated protein, HI1409 family	NA	A0A2R3UAL5	Myoviridae_environmental_samples	41.4	3.4e-98
VED49999.1|2666194_2666893_+|head	putative phage head morphogenesis protein	head	H9C0V1	Aeromonas_phage	53.5	1.9e-64
VED50001.1|2666896_2668066_+	Uncharacterized protein conserved in bacteria	NA	A0A219YCD3	Aeromonas_phage	37.3	7.6e-58
2666996:2667011	attR	AACGTCAACGCCTACT	NA	NA	NA	NA
VED50003.1|2668067_2668550_+	Uncharacterised protein	NA	A0A219YBF2	Aeromonas_phage	50.3	4.5e-33
VED50005.1|2668549_2669587_+	gp12	NA	A0A219YBB0	Aeromonas_phage	50.0	1.2e-83
VED50007.1|2669588_2669915_+	Uncharacterised protein	NA	A0A1X9SFA9	Acinetobacter_phage	42.6	1.6e-10
VED50009.1|2669914_2670358_+	Uncharacterised protein	NA	Q2NPC6	Xanthomonas_phage	47.4	1.9e-17
VED50011.1|2670360_2670924_+	Uncharacterised protein	NA	H9C0W2	Aeromonas_phage	31.5	1.6e-16
VED50013.1|2670920_2671289_+	Uncharacterised protein	NA	Q6UJ26	Burkholderia_virus	30.6	7.3e-07
VED50015.1|2671270_2671822_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50017.1|2671825_2673307_+	Protein of uncharacterised function (DUF3383)	NA	Q2NPD0	Xanthomonas_phage	34.2	8.7e-59
VED50019.1|2673306_2673750_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50021.1|2673930_2674461_+	ORF45	NA	A0A2H4FQV0	Salmonella_phage	67.2	3.9e-62
VED50023.1|2674539_2675016_+	Uncharacterised protein	NA	A0A068CGG2	Acinetobacter_phage	31.1	6.5e-08
VED50025.1|2675217_2677176_+	lytic transglycosylase, catalytic	NA	A0A0M4REK7	Salmonella_phage	33.3	2.9e-33
VED50027.1|2677179_2678019_+	Uncharacterised protein	NA	A0A077KGW3	Edwardsiella_phage	32.9	2.0e-28
VED50029.1|2678020_2678326_+	Uncharacterised protein	NA	A0A077K9U4	Edwardsiella_phage	48.5	6.2e-20
VED50031.1|2678322_2679192_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50033.1|2679181_2679769_+|plate	phage P2 baseplate assembly protein gpV	plate	A1Z003	Burkholderia_virus	23.4	9.8e-06
VED50035.1|2679768_2680422_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50037.1|2680439_2680844_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50039.1|2680851_2682084_+	hypothetical bacteriophage protein	NA	A0A077KGW9	Edwardsiella_phage	50.7	6.7e-105
VED50041.1|2682076_2682664_+	hypothetical bacteriophage protein	NA	A0A077K9U8	Edwardsiella_phage	43.9	1.7e-34
VED50043.1|2682665_2683709_+	Uncharacterised protein	NA	A0A077KC23	Edwardsiella_phage	39.8	2.2e-16
VED50045.1|2683718_2686235_+	Uncharacterised protein	NA	A0A2H4YH15	Raoultella_phage	29.8	5.4e-61
VED50047.1|2686245_2686992_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50049.1|2687098_2687338_+	Uncharacterised protein	NA	I6PD82	Cronobacter_phage	54.4	9.8e-21
VED50051.1|2687340_2687649_+	Uncharacterised protein	NA	K7PGV5	Enterobacterial_phage	51.0	3.8e-25
>prophage 6
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	3472454	3520112	5709996	integrase,transposase	Escherichia_phage(34.38%)	53	3472998:3473015	3520113:3520130
VED51527.1|3472454_3472997_+|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	93.3	6.1e-95
3472998:3473015	attL	ATTATCCGTGGCGATTCA	NA	NA	NA	NA
VED51529.1|3473108_3473714_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED51531.1|3473778_3474525_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED51533.1|3475113_3476094_-|transposase	putative transposase	transposase	Q38213	Escherichia_phage	99.7	1.6e-186
VED51535.1|3476177_3476294_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED51537.1|3476652_3477831_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
VED51539.1|3478816_3479740_-|transposase	transposase	transposase	Q9MCT5	Escherichia_phage	100.0	2.2e-177
VED51541.1|3480439_3481513_+	Predicted membrane protein	NA	NA	NA	NA	NA
VED51543.1|3481629_3482007_-|transposase	IS1 transposase orfB	transposase	Q71TF0	Escherichia_phage	99.2	8.4e-67
VED51545.1|3482051_3482327_-|transposase	IS1 transposase orfA	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VED51547.1|3482424_3483750_-	FAD-dependent pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	8.5e-114
VED51549.1|3483858_3484134_+|transposase	IS1 transposase orfA	transposase	Q71TE9	Escherichia_phage	97.8	2.3e-45
VED51551.1|3484178_3484556_+|transposase	IS1 transposase orfB	transposase	Q71TF0	Escherichia_phage	99.2	8.4e-67
VED51553.1|3485483_3486608_+	Transposase and inactivated derivatives	NA	U5N3F9	Enterobacteria_phage	92.5	9.8e-204
VED51571.1|3487084_3487606_+	RNA polymerase sigma factor, sigma-70 family	NA	NA	NA	NA	NA
VED51573.1|3487602_3488511_+	FecR anti-FecI sigma factor	NA	NA	NA	NA	NA
VED51575.1|3488643_3489555_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
VED51577.1|3489656_3490208_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
VED51579.1|3490403_3490730_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
VED51581.1|3490740_3490977_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
VED51583.1|3491137_3491455_+	ABC-type Fe3+-citrate transport system, periplasmic component	NA	NA	NA	NA	NA
VED51585.1|3491469_3491877_+	ABC-type Fe3+-citrate transport system, periplasmic component	NA	NA	NA	NA	NA
VED51587.1|3491911_3492910_+	ABC-type Fe3+-siderophore transport system, permease component	NA	NA	NA	NA	NA
VED51589.1|3492906_3493863_+	ABC-type Fe3+-siderophore transport system, permease component	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	5.3e-17
VED51591.1|3493863_3494631_+	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	NA	G3M9Y6	Bacillus_virus	25.2	9.8e-14
VED51593.1|3494729_3495023_+	Transposase and inactivated derivatives	NA	A0A0P0ZDM8	Stx2-converting_phage	95.9	1.8e-48
VED51595.1|3495974_3496985_-	NADPH:quinone reductase and related Zn-dependent oxidoreductases	NA	NA	NA	NA	NA
VED51596.1|3497222_3497588_+	lac repressor	NA	C6ZCU4	Enterobacteria_phage	98.2	1.5e-49
VED51598.1|3497626_3498292_+	lac repressor	NA	C6ZCU4	Enterobacteria_phage	95.8	6.6e-99
VED51600.1|3498426_3501498_+	beta-D-galactosidase	NA	L0N6M2	Herpes_simplex_virus	96.5	0.0e+00
VED51602.1|3501549_3502803_+	galactoside permease	NA	NA	NA	NA	NA
VED51604.1|3503023_3503401_-|transposase	IS1 transposase orfB	transposase	Q71TF0	Escherichia_phage	99.2	8.4e-67
VED51606.1|3503445_3503721_-|transposase	IS1 transposase orfA	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VED51608.1|3503873_3504179_+|transposase	transposase Tn3 family protein	transposase	A0A1B0V7H9	Salmonella_phage	64.0	1.5e-26
VED51610.1|3505281_3505614_+|transposase	transposase IS3/IS911 family protein	transposase	Q716C1	Shigella_phage	97.0	1.5e-43
VED51612.1|3505826_3506144_+|integrase	integrase catalytic subunit	integrase	Q716C2	Shigella_phage	99.0	3.3e-56
VED51614.1|3506531_3507311_+|transposase	IS3 family transposase orfB	transposase	S5WIU1	Leptospira_phage	44.6	5.1e-50
VED51616.1|3507546_3507828_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED51618.1|3507939_3508443_-|transposase	putative transposase	transposase	U5P0U6	Shigella_phage	98.8	8.2e-94
VED51620.1|3508920_3510246_-	FAD-dependent pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	8.5e-114
VED51622.1|3510354_3510630_+|transposase	IS1 transposase orfA	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VED51624.1|3510674_3511052_+|transposase	IS1 transposase orfB	transposase	Q71TF0	Escherichia_phage	99.2	8.4e-67
VED51626.1|3510986_3511166_-	Uncharacterised protein	NA	A0A2L1IV26	Escherichia_phage	100.0	6.0e-07
VED51628.1|3511241_3512999_-	ATPase	NA	A0A1L2CUT6	Pectobacterium_phage	39.8	5.1e-98
VED51630.1|3512995_3513979_-	ATPase	NA	B5LJM1	Mycobacterium_phage	27.3	1.0e-07
VED51632.1|3514065_3515211_-	MscS mechanosensitive ion channel	NA	NA	NA	NA	NA
VED51634.1|3515256_3515415_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED51636.1|3515445_3516297_+	RNA polymerase factor sigma-32	NA	A0A248SJA5	Salicola_phage	38.9	7.0e-45
VED51638.1|3516348_3517155_-	Linocin-M18	NA	NA	NA	NA	NA
VED51640.1|3517147_3518254_-	Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup	NA	NA	NA	NA	NA
VED51642.1|3518305_3518938_-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	29.1	3.8e-11
VED51644.1|3518964_3519243_+	ISEhe3 orfA	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
VED51646.1|3519569_3520112_+|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	95.0	1.1e-96
3520113:3520130	attR	ATTATCCGTGGCGATTCA	NA	NA	NA	NA
>prophage 7
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	3735983	3772364	5709996	tail,head,integrase,portal,terminase,plate,capsid	Enterobacteria_phage(48.39%)	53	3737407:3737427	3772435:3772455
VED52043.1|3735983_3736157_-	Conidiation-specific protein 10	NA	Q9KX95	Enterobacteria_phage	92.6	1.4e-05
VED52045.1|3736539_3737136_+	TrpR binding protein WrbA	NA	NA	NA	NA	NA
VED52047.1|3737156_3737384_+	Putative cytoplasmic protein	NA	NA	NA	NA	NA
3737407:3737427	attL	AACCCGGATTGCTCCGGGTTT	NA	NA	NA	NA
VED52049.1|3737536_3737923_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED52051.1|3737949_3738162_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52053.1|3738177_3738426_-	transcriptional activator Ogr/delta	NA	NA	NA	NA	NA
VED52055.1|3738470_3739625_-	late control D family protein	NA	B9A7A9	Serratia_phage	80.7	1.9e-178
VED52057.1|3739777_3740959_+|tail	major tail sheath protein FI	tail	A0A0A7NV69	Enterobacteria_phage	69.8	7.2e-157
VED52059.1|3740958_3741474_+|tail	major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	68.8	3.1e-64
VED52061.1|3741528_3741828_+|tail	tail E family protein	tail	B9A7B2	Serratia_phage	75.8	2.2e-33
VED52063.1|3741990_3744927_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	44.5	1.9e-206
VED52065.1|3744936_3745425_+	P2 GpU family protein	NA	A0A0A7NV65	Enterobacteria_phage	61.1	8.9e-53
VED52067.1|3745552_3746629_-	Tail Fiber protein	NA	Q37842	Escherichia_phage	51.3	2.9e-35
VED52069.1|3746649_3746997_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52071.1|3747082_3747388_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52073.1|3747392_3748748_-	Uncharacterised protein	NA	B5TAB2	Burkholderia_phage	38.9	1.7e-72
VED52075.1|3748884_3749814_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52077.1|3749815_3750382_-|tail	phage tail protein I	tail	A0A0A7NPV1	Enterobacteria_phage	49.1	1.0e-39
VED52079.1|3750413_3751313_-|plate	Baseplate J family protein	plate	A0A0A7NPY5	Enterobacteria_phage	62.2	4.0e-91
VED52081.1|3751299_3751668_-	GPW/gp25 family protein	NA	A0A0A7NQ90	Enterobacteria_phage	58.3	1.0e-29
VED52083.1|3751664_3752249_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	63.0	6.0e-64
VED52085.1|3752248_3752890_-	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	47.3	9.9e-44
VED52087.1|3752886_3753345_-|tail	P2 phage tail completion R family protein	tail	A0A0A7NPU6	Enterobacteria_phage	46.8	4.5e-30
VED52089.1|3753489_3753885_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52091.1|3753881_3754433_-	lysozyme from lambdoid prophage DLP12	NA	Q1I0Z1	Pasteurella_virus	41.3	7.8e-29
VED52093.1|3754429_3754711_-	Uncharacterised protein	NA	B9A7B8	Serratia_phage	54.5	7.0e-18
VED52095.1|3754701_3754902_-|tail	tail X family protein	tail	A0A0A7NV57	Enterobacteria_phage	66.2	5.1e-15
VED52097.1|3754901_3755399_-|head	head completion protein	head	B9A7B7	Serratia_phage	69.7	3.8e-59
VED52099.1|3755501_3756428_-|terminase	small terminase subunit	terminase	B9A7B6	Serratia_phage	75.3	1.5e-85
VED52101.1|3756474_3757521_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M3ULA3	Salmonella_phage	54.2	3.1e-103
VED52103.1|3757545_3758379_-|capsid	capsid scaffolding	capsid	B9A7B4	Serratia_phage	73.6	1.2e-110
VED52105.1|3758536_3760258_+|terminase	terminase-like protein	terminase	A0A0A7NV54	Enterobacteria_phage	65.8	4.5e-224
VED52107.1|3760257_3761310_+|portal	phage portal protein, PBSX family	portal	A0A0A7NPT9	Enterobacteria_phage	67.5	4.6e-139
VED52109.1|3761957_3762113_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED52111.1|3762112_3762520_+	death-on-curing family protein	NA	NA	NA	NA	NA
VED52113.1|3762625_3762940_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52115.1|3763061_3763475_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52117.1|3763505_3764207_-	phage DNA methylase	NA	A0A0M4S5U3	Salmonella_phage	69.3	3.8e-89
VED52119.1|3764309_3766808_-	bacteriophage replication gene A	NA	F1BUS0	Erwinia_phage	41.2	4.2e-138
VED52121.1|3766866_3767022_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52123.1|3767032_3767206_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52125.1|3767192_3768161_-	DNA adenine methylase	NA	A0A0M4QWR0	Salmonella_phage	51.2	2.5e-78
VED52127.1|3768215_3768572_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52129.1|3768580_3768928_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52131.1|3768918_3769125_-	exodeoxyribonuclease VIII	NA	A0A192Y6E0	Salmonella_phage	37.0	1.3e-05
VED52133.1|3769136_3769346_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52135.1|3769414_3769687_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52136.1|3769899_3770139_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52138.1|3770151_3770415_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED52140.1|3770426_3770873_-	Regulatory phage protein cox	NA	NA	NA	NA	NA
VED52142.1|3770967_3771270_+	immunity repressor	NA	Q1JS63	Enterobacteria_phage	62.0	8.8e-27
VED52144.1|3771357_3772050_+	tyrosine recombinase XerC	NA	Q83VS6	Escherichia_phage	46.4	1.9e-56
VED52146.1|3772046_3772364_+|integrase	integrase	integrase	A0A0F7LBR0	Escherichia_phage	65.9	6.2e-31
3772435:3772455	attR	AACCCGGATTGCTCCGGGTTT	NA	NA	NA	NA
>prophage 8
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	3907971	3918901	5709996	tRNA	Escherichia_phage(50.0%)	7	NA	NA
VED52393.1|3907971_3908589_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.1	7.5e-73
VED52395.1|3908599_3908929_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	53.3	1.5e-27
VED52397.1|3908976_3911037_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.8	1.7e-174
VED52399.1|3911238_3912531_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.5	4.7e-93
VED52401.1|3912623_3913967_-	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	42.0	1.9e-81
VED52403.1|3913975_3914587_-	Outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
VED52405.1|3914719_3918901_-	cell division protein	NA	S5VNE3	Mycobacterium_phage	49.0	5.6e-87
>prophage 9
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	3922912	3932651	5709996	protease,tRNA	Brazilian_cedratvirus(16.67%)	8	NA	NA
VED52413.1|3922912_3924634_+	Transport ATP-binding protein CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	32.2	3.4e-14
VED52415.1|3924778_3925483_+|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
VED52417.1|3925994_3926213_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
VED52419.1|3926349_3928629_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	2.1e-165
VED52421.1|3928659_3928977_-|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.9	9.0e-14
VED52423.1|3929302_3929524_+	cold-shock DNA-binding protein family protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	5.1e-16
VED52425.1|3929592_3931539_-	Macrolide export ATP-binding/permease protein MacB	NA	G9BWD6	Planktothrix_phage	40.5	6.5e-38
VED52427.1|3931535_3932651_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	47.1	2.4e-05
>prophage 10
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	5086221	5096561	5709996	integrase,capsid	Enterobacteria_phage(62.5%)	11	5085386:5085399	5092274:5092287
5085386:5085399	attL	ATGGCCGCTTTTCA	NA	NA	NA	NA
VED54546.1|5086221_5086764_-|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	95.0	1.1e-96
VED54547.1|5087090_5087369_-	ISEhe3 orfA	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
VED54548.1|5087783_5090117_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.2	0.0e+00
VED54550.1|5090128_5090449_-	P4 phage protein	NA	NA	NA	NA	NA
VED54551.1|5090445_5090673_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED54552.1|5091223_5091490_-	phage transcriptional regulator, AlpA	NA	Q7M299	Enterobacteria_phage	71.6	2.0e-30
VED54553.1|5092050_5092788_+|capsid	putative phage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	59.2	1.3e-68
5092274:5092287	attR	TGAAAAGCGGCCAT	NA	NA	NA	NA
VED54555.1|5092784_5093030_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	58.0	1.9e-19
VED54556.1|5093047_5093614_+	phage polarity suppression	NA	Q7M2A1	Enterobacteria_phage	63.8	4.3e-59
VED54557.1|5094268_5095144_-	DNA-methyltransferase	NA	NA	NA	NA	NA
VED54558.1|5095238_5096561_-	Uncharacterised protein	NA	Q7Y4B3	Escherichia_virus	27.4	1.2e-11
>prophage 11
LR134253	Klebsiella aerogenes strain NCTC9997 genome assembly, chromosome: 3	5709996	5526621	5532719	5709996		Enterobacteria_phage(33.33%)	7	NA	NA
VED55302.1|5526621_5527710_-	4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	NA	A0A0F7LAY0	uncultured_marine_virus	41.7	5.0e-19
VED55304.1|5527714_5528416_-	Lipopolysaccharide biosynthesis protein RffC	NA	NA	NA	NA	NA
VED55306.1|5528366_5528837_-	Glucose-1-phosphate thymidylyltransferase	NA	A0A291LA53	Escherichia_phage	62.6	1.5e-49
VED55308.1|5528836_5529247_-	Glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	74.8	7.3e-40
VED55310.1|5529265_5530333_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.6	6.6e-101
VED55312.1|5530329_5531592_-	UDP-glucose dehydrogenase	NA	M1HNJ7	Paramecium_bursaria_Chlorella_virus	26.6	2.9e-23
VED55314.1|5531588_5532719_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A1V0SAG5	Catovirus	31.6	2.6e-23
