The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	826518	875140	5167677	transposase	Bacillus_virus(18.18%)	55	NA	NA
VED05358.1|826518_826941_+|transposase	transposase	transposase	F6MIM4	Haemophilus_phage	68.6	4.0e-09
VED05359.1|826956_827706_+|transposase	transposase	transposase	A0A218MNI5	uncultured_virus	49.7	3.4e-51
VED05360.1|827832_829092_-	KpsS protein	NA	NA	NA	NA	NA
VED05361.1|829126_831154_-	polysialic acid capsule polysaccharide export protein KpsC	NA	NA	NA	NA	NA
VED05362.1|831150_831891_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
VED05363.1|831900_833577_-	polysialic acid transport protein	NA	NA	NA	NA	NA
VED05364.1|833600_834749_-	Capsule polysaccharide export inner-membrane protein	NA	NA	NA	NA	NA
VED05365.1|834820_835804_-	polysialic acid capsule synthesis protein KpsF	NA	A0A2P0VNK5	Tetraselmis_virus	31.4	6.2e-37
VED05366.1|836599_836890_+	ybl126	NA	NA	NA	NA	NA
VED05367.1|837126_837969_-	putative restriction methylase	NA	NA	NA	NA	NA
VED05368.1|838053_838251_-	Aec78	NA	NA	NA	NA	NA
VED05369.1|838268_838757_-	aec77	NA	NA	NA	NA	NA
VED05370.1|838753_839131_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA	NA
VED05371.1|839177_839345_-	YagB/YeeU/YfjZ family protein	NA	NA	NA	NA	NA
VED05372.1|839630_839852_-	CP4-44 prophage	NA	A0A142F0X9	Klebsiella_phage	45.8	8.5e-11
VED05373.1|839914_840391_-	putative DNA repair protein	NA	NA	NA	NA	NA
VED05374.1|840406_840886_-	anti-restriction protein	NA	A0A2D0W9W4	Bordetella_phage	33.8	8.9e-13
VED05375.1|840967_841786_-	CP4-57 prophage protein	NA	A0A2C9CX26	Yersinia_phage	39.5	1.4e-47
VED05376.1|841875_842109_-	CP4-6 prophage protein	NA	NA	NA	NA	NA
VED05377.1|842114_842792_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05378.1|842939_843620_-	putative DNA-binding protein	NA	NA	NA	NA	NA
VED05379.1|843717_843894_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05380.1|843822_844707_-	putative ATP/GTP-binding protein	NA	NA	NA	NA	NA
VED05381.1|844807_846031_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05382.1|847524_848256_+	malate transporter	NA	NA	NA	NA	NA
VED05383.1|848801_850967_+	TonB-dependent receptor	NA	NA	NA	NA	NA
VED05384.1|850977_851967_+	iron-chelating periplasmic-binding protein	NA	NA	NA	NA	NA
VED05385.1|851985_853044_+	iron ABC transporter	NA	NA	NA	NA	NA
VED05386.1|853040_853808_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	27.9	1.7e-13
VED05387.1|853861_854119_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05388.1|854485_855310_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05389.1|855306_855432_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05390.1|856127_856232_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05391.1|856336_856903_+	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA	NA
VED05392.1|857149_857725_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05393.1|857793_858030_+	putative regulatory protein	NA	NA	NA	NA	NA
VED05394.1|858026_858185_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05395.1|858272_858821_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05396.1|858977_859184_-	putative proP effector	NA	NA	NA	NA	NA
VED05397.1|859180_859354_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05398.1|860076_860511_+	H-NS histone family protein	NA	NA	NA	NA	NA
VED05399.1|860927_861497_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05400.1|861597_862830_-	deoxyguanosinetriphosphate triphosphohydrolase-like protein	NA	NA	NA	NA	NA
VED05401.1|862980_863847_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VED05402.1|863843_864149_-|transposase	putative transposase-related protein	transposase	NA	NA	NA	NA
VED05403.1|864290_864518_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	98.4	4.6e-28
VED05404.1|865297_865819_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VED05405.1|865815_866769_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VED05406.1|866855_869180_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VED05407.1|869224_870127_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VED05408.1|870123_871122_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VED05409.1|871118_872075_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VED05410.1|872075_872843_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VED05411.1|873398_873656_-	KpLE2 phage-like element	NA	NA	NA	NA	NA
VED05412.1|874063_875140_-|transposase	putative transposase	transposase	NA	NA	NA	NA
>prophage 2
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	893307	931811	5167677	integrase,transposase	Stx2-converting_phage(33.33%)	43	899520:899536	938669:938685
VED05426.1|893307_893760_-|transposase	putative transposase	transposase	A0A077SLK2	Escherichia_phage	83.2	1.1e-68
VED05427.1|893853_894153_+|transposase	transposase	transposase	NA	NA	NA	NA
VED05428.1|894149_894716_+	putative IS tranposase	NA	A0A0P0I4A4	Acinetobacter_phage	39.4	7.7e-24
VED05429.1|895123_895486_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	80.3	4.3e-28
VED05430.1|895482_895833_+|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	63.8	5.2e-39
VED05431.1|895863_897432_+|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.0	5.3e-147
VED05432.1|897541_898675_-|transposase	transposase, IS110 family protein	transposase	NA	NA	NA	NA
VED05433.1|898738_898933_+|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	70.2	3.0e-20
899520:899536	attL	CGCCCCACAATCCGCTC	NA	NA	NA	NA
VED05434.1|899788_900430_-	putative transcription regulator protein	NA	NA	NA	NA	NA
VED05435.1|900599_901148_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05436.1|901198_902416_+	FMN-dependent dehydrogenase	NA	NA	NA	NA	NA
VED05437.1|902442_902841_+	inner membrane protein	NA	NA	NA	NA	NA
VED05438.1|903412_903961_+	F17 fimbrial protein	NA	NA	NA	NA	NA
VED05439.1|904025_904751_+	F17-like fimbrial chaperone	NA	NA	NA	NA	NA
VED05440.1|904758_907293_+	F17-like fimbrial usher	NA	NA	NA	NA	NA
VED05441.1|907289_908369_+	F17-like fimbril adhesin subunit	NA	NA	NA	NA	NA
VED05442.1|909534_910212_+|integrase	integrase core domain-containing protein	integrase	Q716C2	Shigella_phage	61.4	2.6e-79
VED05443.1|910409_910577_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05444.1|910818_911028_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05445.1|911166_911535_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05446.1|911703_911853_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05447.1|912039_912261_-	F1C and S fimbrial switch regulatory protein	NA	NA	NA	NA	NA
VED05448.1|912679_913009_+	major pilu subunit operon regulatory protein PapB	NA	NA	NA	NA	NA
VED05449.1|913183_913276_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05450.1|913383_913929_+	S-fimbrial protein subunit	NA	NA	NA	NA	NA
VED05451.1|914092_914539_+	S fimbriae minor subunit SfaD	NA	NA	NA	NA	NA
VED05452.1|914579_915275_+	F1C periplasmic chaperone	NA	NA	NA	NA	NA
VED05453.1|915344_916169_+	F1C fimbrial usher	NA	NA	NA	NA	NA
VED05454.1|916629_917973_+	F1C fimbrial usher	NA	NA	NA	NA	NA
VED05455.1|917985_918513_+	S-fimbrial adhesin protein SfaG	NA	NA	NA	NA	NA
VED05456.1|918534_919026_+	F1C minor fimbrial subunit protein G presursor	NA	NA	NA	NA	NA
VED05457.1|919018_919987_+	protein FimH	NA	NA	NA	NA	NA
VED05458.1|920290_921031_+	putative EAL domain-containing protein	NA	NA	NA	NA	NA
VED05459.1|921228_921729_+	PapX protein	NA	NA	NA	NA	NA
VED05460.1|922221_922938_+	membrane protein	NA	NA	NA	NA	NA
VED05461.1|923358_923607_-|transposase	truncated transposase	transposase	Q6H9S6	Enterobacteria_phage	90.6	2.1e-26
VED05462.1|924378_924591_-|transposase	transposase	transposase	NA	NA	NA	NA
VED05463.1|924939_925101_-	putative cobalamin synthesis protein	NA	NA	NA	NA	NA
VED05464.1|925876_926245_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05465.1|926462_927203_+	heat resistant agglutinin 1	NA	NA	NA	NA	NA
VED05466.1|927384_928887_+	putative membrane-associated, metal-dependent hydrolase	NA	NA	NA	NA	NA
VED05467.1|929246_930290_-	ShiA-like protein	NA	NA	NA	NA	NA
VED05468.1|930545_931811_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	42.8	7.6e-80
938669:938685	attR	CGCCCCACAATCCGCTC	NA	NA	NA	NA
>prophage 3
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	1182375	1251192	5167677	tRNA,tail,head,protease,plate	Burkholderia_virus(35.42%)	87	NA	NA
VED05686.1|1182375_1183425_+|tRNA	tRNA pseudouridine synthase D	tRNA	NA	NA	NA	NA
VED05687.1|1183405_1184167_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
VED05688.1|1184160_1184787_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
VED05689.1|1184926_1186066_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	2.3e-06
VED05690.1|1186128_1186239_+	RNA polymerase sigma factor RpoS	NA	NA	NA	NA	NA
VED05691.1|1186180_1187122_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	5.8e-32
VED05692.1|1187299_1187851_-	flavodoxin-like protein	NA	NA	NA	NA	NA
VED05693.1|1188075_1189119_+	beta-lactamase-like protein	NA	NA	NA	NA	NA
VED05694.1|1189261_1190626_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
VED05695.1|1190714_1191491_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VED05696.1|1191495_1192134_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	2.8e-83
VED05697.1|1192130_1193393_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	2.2e-135
VED05698.1|1193389_1194298_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.9	5.1e-118
VED05699.1|1194493_1195261_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.4	2.2e-69
VED05700.1|1195311_1195968_-	serine/threonine-specific protein phosphatase 2	NA	A0A077SLQ6	Escherichia_phage	45.2	2.8e-49
VED05701.1|1196073_1198635_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.8	1.6e-31
VED05702.1|1198920_1199265_+	protein	NA	NA	NA	NA	NA
VED05703.1|1199303_1199732_-	molybdenum-pterin-binding-protein	NA	NA	NA	NA	NA
VED05704.1|1199776_1201855_-	formate hydrogenlyase transcriptional activator	NA	NA	NA	NA	NA
VED05705.1|1201928_1202939_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA	NA
VED05706.1|1202935_1204057_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA	NA
VED05707.1|1204056_1204329_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA	NA
VED05708.1|1204319_1205192_-	hydrogenase isoenzymes nickel incorporation protein	NA	NA	NA	NA	NA
VED05709.1|1205195_1205546_-	hydrogenase nickel incorporation protein	NA	NA	NA	NA	NA
VED05710.1|1205757_1206219_+	formate hydrogenlyase regulatory protein	NA	NA	NA	NA	NA
VED05711.1|1206343_1206955_+	formate hydrogenlyase subunit 2	NA	NA	NA	NA	NA
VED05712.1|1206951_1208778_+	formate hydrogenlyase subunit 3	NA	NA	NA	NA	NA
VED05713.1|1208780_1209704_+	formate hydrogenlyase subunit 4	NA	NA	NA	NA	NA
VED05714.1|1209721_1209859_+	formate hydrogenlyase subunit E	NA	NA	NA	NA	NA
VED05715.1|1209896_1210469_-	DNA-invertase (site specific recombinase) from prophage	NA	A0A0A7NPV4	Enterobacteria_phage	85.2	4.6e-85
VED05716.1|1210540_1211053_+|tail	Putative tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	47.9	1.3e-33
VED05717.1|1211052_1211667_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	61.5	1.7e-61
VED05718.1|1211673_1212129_-|tail	putative side tail fiber protein from lambdoid prophage	tail	A0A0F7LCR3	Escherichia_phage	50.0	6.8e-31
VED05719.1|1212157_1214152_-|tail	putative phage tail fiber protein H	tail	A0A0K2FIZ6	Escherichia_phage	44.4	2.7e-39
VED05720.1|1214154_1214733_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	66.8	1.7e-66
VED05721.1|1214725_1215829_-|plate	phage-related baseplate assembly protein J	plate	Q6QI99	Burkholderia_phage	55.2	8.3e-107
VED05722.1|1215819_1216167_-	phage GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	62.4	5.9e-35
VED05723.1|1216221_1216818_-|plate	phage baseplate assembly protein V	plate	A4JWL4	Burkholderia_virus	45.7	3.2e-36
VED05724.1|1216814_1217969_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.3	1.2e-84
VED05725.1|1217956_1218169_-|tail	putative phage tail protein	tail	Q6QIA3	Burkholderia_phage	55.7	3.4e-17
VED05726.1|1218168_1219053_-	putative phage P2 GpU family protein	NA	A4JWL1	Burkholderia_virus	47.9	6.8e-51
VED05727.1|1219052_1222265_-|tail	putative phage tail protein	tail	A4JWL0	Burkholderia_virus	31.2	1.1e-82
VED05728.1|1222422_1222758_-	putative phage-like protein	NA	NA	NA	NA	NA
VED05729.1|1222855_1223137_-	phage-like protein	NA	NA	NA	NA	NA
VED05730.1|1223139_1223661_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.6	1.8e-67
VED05731.1|1223660_1225088_-|tail	phage-related contractile tail sheath protein	tail	A4JWK5	Burkholderia_virus	76.3	4.5e-214
VED05732.1|1225077_1225329_-	phage-like protein	NA	NA	NA	NA	NA
VED05733.1|1225328_1225793_-	phage-related protein Gp37-like protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
VED05734.1|1225792_1226239_-	phage-like protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
VED05735.1|1226240_1226579_-	phage-like protein	NA	NA	NA	NA	NA
VED05736.1|1226588_1227542_-	phage-like protein	NA	A4JWK0	Burkholderia_virus	43.8	3.4e-64
VED05737.1|1227556_1228672_-	phage-like protein	NA	A4JWJ9	Burkholderia_virus	51.6	9.4e-98
VED05738.1|1228886_1229345_-|tail	putative prophagevirion morphogenesis tail protein	tail	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
VED05739.1|1229347_1230169_-|head	putative head morphogenesis protein of bacteriophage	head	A4JWJ6	Burkholderia_virus	61.2	1.2e-97
VED05740.1|1230149_1231646_-	putative phage-like protein	NA	A4JWJ5	Burkholderia_virus	59.2	4.8e-166
VED05741.1|1231645_1233241_-	putative phage-related protein	NA	A4JWJ4	Burkholderia_virus	62.8	6.5e-185
VED05742.1|1233237_1233783_-	Mu-like phage-related protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
VED05743.1|1233782_1234094_-	Uncharacterised protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
VED05744.1|1234093_1234420_-	putative phage-related exported protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
VED05745.1|1234416_1235067_-	putative phage-related lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
VED05746.1|1235050_1235758_-	putative phage-related lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	58.2	3.1e-62
VED05747.1|1235793_1236144_-	putative phage-related membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	1.5e-22
VED05748.1|1236274_1236751_+	putative ABC transporter ATPase	NA	NA	NA	NA	NA
VED05749.1|1236788_1237370_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05750.1|1237460_1238447_-	putative transmembrane protein	NA	NA	NA	NA	NA
VED05751.1|1238443_1238905_-	putative DNA-binding protein from phage origin	NA	NA	NA	NA	NA
VED05752.1|1238955_1239144_+	putative phage-related DNA-binding protein	NA	Q5ZQZ9	Pseudomonas_phage	71.0	6.1e-18
VED05753.1|1239196_1239505_+	phage-related protein helix-turn-helix domain superfamily	NA	Q5ZR02	Pseudomonas_phage	55.9	5.5e-24
VED05754.1|1239515_1240430_+	Uncharacterised protein	NA	A4JWN3	Burkholderia_virus	52.5	6.8e-70
VED05755.1|1240433_1242203_+	Integrase core domain	NA	Q6QIE0	Burkholderia_phage	68.3	1.4e-228
VED05756.1|1242213_1243380_+	ExeA-like protein	NA	A4JWN1	Burkholderia_virus	59.7	9.7e-122
VED05757.1|1243382_1243652_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05758.1|1243679_1244210_+	Mu-like prophage host-nuclease inhibitor protein Gam	NA	L7P7T1	Pseudomonas_phage	67.3	4.1e-59
VED05759.1|1244307_1244502_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05760.1|1244498_1244771_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05761.1|1244780_1245077_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05762.1|1245091_1245307_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05763.1|1245303_1245987_+	Protein of uncharacterised function (DUF2786)	NA	L7P7W8	Pseudomonas_phage	36.2	1.4e-24
VED05764.1|1245983_1246214_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05765.1|1246203_1246410_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05766.1|1246411_1246861_+	Mu prophage; modulation of host gene protein	NA	A4JWM5	Burkholderia_virus	45.1	6.1e-24
VED05767.1|1246832_1247222_+	putative DNA-binding protein from phage origin	NA	Q6QIE8	Burkholderia_phage	54.2	1.5e-31
VED05768.1|1247401_1249003_+	formate hydrogenlyase subunit E	NA	NA	NA	NA	NA
VED05769.1|1249012_1249555_+	formate hydrogenlyase subunit 6	NA	NA	NA	NA	NA
VED05770.1|1249554_1250322_+	formate hydrogenlyase subunit 7	NA	NA	NA	NA	NA
VED05771.1|1250318_1250729_+	formate hydrogenlyase maturation protein	NA	NA	NA	NA	NA
VED05772.1|1250721_1251192_+|protease	hydrogenase 3 maturation protease	protease	NA	NA	NA	NA
>prophage 4
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	1363481	1404524	5167677	portal,tail,integrase,terminase	Salmonella_phage(53.49%)	54	1363220:1363237	1405674:1405691
1363220:1363237	attL	TTCACACATATCACAATT	NA	NA	NA	NA
VED05894.1|1363481_1364879_+|integrase	integrase	integrase	NA	NA	NA	NA
VED05896.1|1364875_1365076_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05898.1|1365072_1366467_-	phage-related DNA helicase	NA	Q3LZN8	Bacteriophage	73.5	4.2e-212
VED05900.1|1366570_1367503_+	Uncharacterised protein	NA	A0A1R3Y6Z6	Salmonella_virus	39.0	6.5e-52
VED05902.1|1367485_1367767_-	phage associated protein	NA	B6SD64	Bacteriophage	67.4	5.7e-28
VED05904.1|1367750_1368011_-	Uncharacterised protein	NA	A0A1V0E5L1	Salmonella_phage	87.0	4.6e-32
VED05906.1|1368007_1368238_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05908.1|1368243_1370307_-	putative DNA polymerase from bacteriophage origin	NA	Q775A3	Bordetella_phage	67.0	5.3e-272
VED05910.1|1370363_1370633_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05912.1|1370700_1371339_-	Uncharacterised protein	NA	H6WRY3	Salmonella_phage	68.8	1.9e-71
VED05914.1|1371390_1371939_-	Protein of uncharacterised function (DUF2815)	NA	Q775A5	Bordetella_phage	65.9	1.6e-66
VED05916.1|1371954_1373256_-	Bbp38	NA	B6SCX9	Bacteriophage	55.7	4.0e-132
VED05918.1|1373258_1374161_-	Uncharacterised protein	NA	Q3LZP9	Bacteriophage	54.4	6.1e-07
VED05920.1|1374157_1374307_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05922.1|1374531_1375101_+	putative coiled-coil protein from phage origin	NA	K7P861	Enterobacteria_phage	52.7	1.6e-37
VED05924.1|1375477_1376107_-	putative phage repressor protein	NA	A0A1I9KG86	Aeromonas_phage	42.2	1.4e-34
VED05926.1|1376214_1376439_+	regulatory protein cro (antirepressor)	NA	NA	NA	NA	NA
VED05928.1|1376442_1378707_+	replication protein	NA	NA	NA	NA	NA
VED05930.1|1379023_1379443_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05932.1|1379491_1379914_+	antitermination protein Q (P5)	NA	U5P0A5	Shigella_phage	35.5	2.7e-13
VED05934.1|1380320_1380662_+	Holin	NA	Q8SBE1	Shigella_phage	91.9	2.8e-53
VED05936.1|1380665_1381142_+	phage lysozyme	NA	Q8SBE0	Shigella_phage	97.5	4.1e-87
VED05938.1|1381125_1381518_+	putative Rz lytic protein from phage origin	NA	Q8SBD9	Shigella_phage	85.3	4.6e-52
VED05940.1|1381670_1381850_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05942.1|1381979_1382528_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED05944.1|1382547_1383099_+|terminase	terminase, small subunit	terminase	G0ZND3	Cronobacter_phage	69.2	4.7e-66
VED05946.1|1383101_1384724_+	putative phage gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	95.2	3.0e-312
VED05948.1|1384723_1386190_+|portal	portal protein	portal	A0A0M4S6U1	Salmonella_phage	92.0	7.9e-262
VED05950.1|1386377_1386815_+	phage Mu protein gp30	NA	A0A0M4REK0	Salmonella_phage	89.7	5.0e-71
VED05952.1|1386829_1388050_+	putative phage-like protein	NA	A0A0M4R5A6	Salmonella_phage	89.3	9.0e-203
VED05954.1|1388053_1388560_+	putative phage related protein	NA	A0A0M4QWZ6	Salmonella_phage	79.9	3.7e-70
VED05955.1|1388571_1389513_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	86.9	3.2e-155
VED05956.1|1389553_1389922_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	87.7	8.8e-53
VED05957.1|1389887_1390295_+	Uncharacterised protein	NA	A0A0M5M3S2	Salmonella_phage	94.8	9.7e-69
VED05958.1|1390291_1390846_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	71.7	2.3e-65
VED05959.1|1390832_1391222_+	putative phage related protein	NA	A0A0M3ULK0	Salmonella_phage	95.3	2.5e-66
VED05960.1|1391196_1391760_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	76.3	7.6e-80
VED05961.1|1391763_1392909_+	Protein of uncharacterised function (DUF3383)	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	73.2	1.8e-160
VED05962.1|1392919_1393360_+	putative phage related protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	75.3	7.0e-57
VED05963.1|1393363_1393816_+	putative phage related protein	NA	A0A0M4S6U8	Salmonella_phage	72.7	6.1e-56
VED05964.1|1393993_1395982_+	putative lytic transglycosylase, catalytic	NA	A0A0M4REK7	Salmonella_phage	74.7	5.1e-272
VED05965.1|1395981_1396569_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	87.4	9.9e-83
VED05966.1|1396568_1396871_+	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	92.0	2.2e-49
VED05967.1|1396873_1397938_+	putative phage related protein	NA	A0A0M4QX01	Salmonella_phage	80.3	7.2e-156
VED05968.1|1397940_1398666_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED05969.1|1398731_1399484_+	putative phage related protein	NA	A0A0M5M1K7	Salmonella_phage	66.7	4.5e-88
VED05970.1|1399483_1399837_+	putative phage related protein	NA	A0A0M4R339	Salmonella_phage	90.6	3.1e-55
VED05971.1|1399836_1401036_+	putative phage related protein	NA	A0A0M4RD32	Salmonella_phage	83.6	2.9e-185
VED05972.1|1401032_1401713_+	putative phage related protein	NA	A0A0M5M1K4	Salmonella_phage	78.3	2.2e-102
VED05973.1|1401712_1402516_+|tail	tail fiber protein	tail	M1TAS6	Escherichia_phage	40.1	6.6e-37
VED05974.1|1402522_1403137_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	60.5	1.1e-60
VED05975.1|1403136_1403691_-|tail	Putative tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	49.7	5.8e-40
VED05977.1|1403720_1404275_+	DNA invertase from prophage CP-933H	NA	A0A1S6L009	Salmonella_phage	87.3	3.7e-87
VED05979.1|1404362_1404524_-	putative transmembrane anchored protein	NA	G9L6D9	Escherichia_phage	98.1	4.7e-19
1405674:1405691	attR	TTCACACATATCACAATT	NA	NA	NA	NA
>prophage 5
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	1609573	1622530	5167677		Escherichia_phage(83.33%)	6	NA	NA
VED06274.1|1609573_1610143_-	type 1 fimbriae regulatory protein	NA	A0A2L1IV36	Escherichia_phage	52.2	7.0e-49
VED06276.1|1610890_1611520_+	type 1 fimbriae regulatory protein	NA	A0A2L1IV36	Escherichia_phage	99.0	1.6e-118
VED06278.1|1611837_1612458_+	LuxR family transcriptional regulator	NA	A0A2L1IV08	Escherichia_phage	99.0	5.9e-118
VED06280.1|1612482_1620432_+	outer membrane autotransporter domain protein	NA	A0A2L1IV38	Escherichia_phage	99.3	0.0e+00
VED06282.1|1620479_1621010_+	putative outer membrane protein	NA	A0A2L1IV11	Escherichia_phage	100.0	4.6e-87
VED06284.1|1621597_1622530_-	transporter protein	NA	E7DYY8	Enterobacteria_phage	99.0	4.6e-167
>prophage 6
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	1859132	1868577	5167677		Enterobacteria_phage(85.71%)	10	NA	NA
VED06784.1|1859132_1860059_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.3	2.6e-08
VED06786.1|1860063_1860795_+	ABC transporter permease	NA	NA	NA	NA	NA
VED06788.1|1860775_1860883_-	putative inner membrane protein	NA	NA	NA	NA	NA
VED06790.1|1860942_1861674_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.0	2.2e-111
VED06792.1|1861895_1863581_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VED06794.1|1863577_1864297_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VED06796.1|1864343_1864814_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VED06798.1|1864854_1865316_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
VED06800.1|1865440_1867444_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	95.1	0.0e+00
VED06802.1|1867440_1868577_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	3.8e-163
>prophage 7
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	2012803	2039741	5167677	transposase	Escherichia_phage(50.0%)	25	NA	NA
VED07055.1|2012803_2013826_+|transposase	transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.1	1.3e-199
VED07057.1|2013825_2014605_+	insertion sequence IS100, ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	99.2	1.3e-138
VED07059.1|2015630_2016233_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED07061.1|2016326_2016533_-	regulatory protein	NA	NA	NA	NA	NA
VED07063.1|2016728_2017925_-|transposase	transposase	transposase	NA	NA	NA	NA
VED07065.1|2019104_2019305_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED07067.1|2019504_2020074_+	malate transporter	NA	NA	NA	NA	NA
VED07069.1|2020239_2020641_+	ybl85	NA	NA	NA	NA	NA
VED07071.1|2020628_2021039_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VED07073.1|2021844_2022702_+|transposase	transposase	transposase	NA	NA	NA	NA
VED07075.1|2023353_2024388_-	phosphotriesterase	NA	NA	NA	NA	NA
VED07077.1|2024390_2025356_-	Putative inner membrane protein	NA	NA	NA	NA	NA
VED07079.1|2025409_2026168_-	cytoplasmic protein	NA	NA	NA	NA	NA
VED07081.1|2026540_2027395_-	carbohydrate kinase	NA	NA	NA	NA	NA
VED07083.1|2027770_2028904_+|transposase	transposase, IS110 family protein	transposase	NA	NA	NA	NA
VED07085.1|2029132_2029330_-|transposase	transposase	transposase	NA	NA	NA	NA
VED07087.1|2029843_2030617_-	outer membrane protein	NA	NA	NA	NA	NA
VED07089.1|2030618_2031143_-	putative acyltransferase	NA	NA	NA	NA	NA
VED07091.1|2031177_2032374_-	putative glycosyl transferase	NA	NA	NA	NA	NA
VED07093.1|2032387_2033041_-	putative GlcNAc-PI de-N-acetylase	NA	NA	NA	NA	NA
VED07095.1|2034088_2035312_+	putative phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.5	1.5e-61
VED07097.1|2035296_2035941_+	ParB-like nuclease	NA	A0A0F7L444	uncultured_marine_virus	50.5	8.2e-54
VED07099.1|2036195_2036324_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED07101.1|2036311_2038459_-	putative outer membrane receptor for iron compound or colicin	NA	NA	NA	NA	NA
VED07103.1|2039501_2039741_+|transposase	transposase, IS4 family protein	transposase	NA	NA	NA	NA
>prophage 8
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	2378295	2423811	5167677	tRNA,tail,integrase,holin,terminase,protease,capsid,portal,plate	Enterobacteria_phage(76.09%)	56	2385631:2385655	2421386:2421410
VED07665.1|2378295_2380224_+|tRNA	threonine tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.3	9.4e-130
VED07666.1|2380335_2380770_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	6.1e-13
VED07668.1|2380866_2381064_+	50S ribosomal subunit protein L35	NA	NA	NA	NA	NA
VED07670.1|2381116_2381473_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
VED07672.1|2381923_2382907_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.1e-33
VED07674.1|2382921_2385309_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
VED07676.1|2385313_2385613_+	integration host factor (IHF)	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
2385631:2385655	attL	GGCCGCTCTGCGGCCTTTTTTCTTT	NA	NA	NA	NA
VED07678.1|2385916_2386057_-	small toxic polypeptide	NA	A0A0A7NPZ4	Enterobacteria_phage	97.8	1.5e-18
VED07680.1|2386247_2386508_-	DNA-binding transcriptional regulator prophage remnant	NA	NA	NA	NA	NA
VED07682.1|2386865_2387624_-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	NA	G1JV20	Mycobacterium_phage	30.1	4.4e-06
VED07684.1|2387750_2388860_-	Gene late control D protein	NA	A0A0A7NQ97	Enterobacteria_phage	94.6	1.8e-194
VED07686.1|2389017_2390202_+|tail	Major tail sheath protein FI	tail	A0A0A7NV69	Enterobacteria_phage	99.0	6.2e-225
VED07688.1|2390201_2390714_+|tail	Major tail tube protein FII	tail	A0A0A7NPV8	Enterobacteria_phage	100.0	3.2e-93
VED07690.1|2390768_2391134_+|tail	phage tail E family protein	tail	A0A0A7NPZ0	Enterobacteria_phage	95.0	7.1e-55
VED07692.1|2391284_2394092_+|tail	tail protein (modular protein)	tail	A0A0A7NRZ9	Enterobacteria_phage	89.6	0.0e+00
VED07694.1|2394104_2394593_+|tail	tail fiber protein	tail	A0A0A7NV65	Enterobacteria_phage	100.0	1.6e-86
VED07696.1|2394619_2395219_-	DNA invertase	NA	A0A0A7NPV4	Enterobacteria_phage	86.3	2.6e-86
VED07698.1|2395748_2396360_+|tail	tail fibre assembly protein	tail	M1SV83	Escherichia_phage	80.0	1.3e-85
VED07700.1|2397292_2398933_-|tail	tail fiber protein	tail	M1TAS6	Escherichia_phage	57.0	3.7e-143
VED07702.1|2398929_2399538_-	Tail protein I	NA	A0A0F7LA36	Escherichia_phage	74.9	1.5e-86
VED07704.1|2399530_2400427_-|plate	Baseplate assembly protein J	plate	A0A0A7NPY5	Enterobacteria_phage	97.3	9.7e-154
VED07706.1|2400429_2400780_-|plate	Baseplate assembly protein W	plate	A0A0A7NQ90	Enterobacteria_phage	99.1	6.0e-59
VED07708.1|2400776_2401358_-|plate	baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	99.5	1.7e-103
VED07710.1|2401354_2401999_-|tail	phage tail protein S	tail	A0A0A7NV60	Enterobacteria_phage	98.1	4.5e-113
VED07712.1|2401982_2402450_-|tail	Phage tail completion protein R	tail	A0A0A7NPU6	Enterobacteria_phage	99.4	7.6e-86
VED07714.1|2402587_2402995_-	Uncharacterised protein	NA	A0A0A7NPY2	Enterobacteria_phage	92.6	2.0e-61
VED07716.1|2402991_2403537_-	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	86.0	3.2e-91
VED07718.1|2403591_2403915_-|holin	putative phage holin protein	holin	A0A0A7NRY9	Enterobacteria_phage	92.5	4.8e-47
VED07720.1|2403917_2404121_-	Tail protein X (GpX)	NA	A0A0A7NV57	Enterobacteria_phage	98.5	8.8e-31
VED07722.1|2404120_2404615_-	Head completion/stabilization protein L	NA	A0A0A7NPU2	Enterobacteria_phage	99.4	1.2e-89
VED07724.1|2404717_2405518_-|terminase	Phage terminase, endonuclease small subunit M	terminase	A0A0A7NPX9	Enterobacteria_phage	91.7	2.3e-130
VED07726.1|2405563_2406616_-|capsid	Major capsid protein precursor (GpN)	capsid	A0A0A7NQ82	Enterobacteria_phage	97.4	2.9e-194
VED07728.1|2406639_2407476_-	Capsid scaffolding protein O	NA	A0A0A7NRY7	Enterobacteria_phage	99.3	7.9e-150
VED07730.1|2407631_2409383_+	Terminase, ATPase subunit (GpP)	NA	A0A0A7NV54	Enterobacteria_phage	98.5	0.0e+00
VED07732.1|2409382_2410429_+|capsid,portal	portal capsid protein Q (GpQ)	capsid,portal	A0A0A7NPT9	Enterobacteria_phage	100.0	1.5e-206
VED07734.1|2410920_2411259_-	putative prophage protein	NA	A0A0A7NRY2	Enterobacteria_phage	100.0	1.6e-56
VED07736.1|2411255_2411588_-|protease	ATP-dependent protease Clp, ATPase subunit	protease	A0A0A7NV51	Enterobacteria_phage	99.1	5.0e-55
VED07738.1|2411651_2411963_-	putative plasmid stability protein	NA	A0A0A7NPT5	Enterobacteria_phage	98.1	1.3e-49
VED07740.1|2411967_2412927_-	Plasmid segregation protein parM (Protein stbA) (ParA locus 36 kDa protein)	NA	A0A0A7NPX4	Enterobacteria_phage	99.1	3.2e-179
VED07742.1|2413003_2415844_-	phage replication protein	NA	A0A0A7NQ77	Enterobacteria_phage	87.8	0.0e+00
VED07744.1|2415840_2416230_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED07746.1|2416302_2416533_-	derepression protein	NA	A0A0A7NV48	Enterobacteria_phage	92.1	2.5e-29
VED07748.1|2416855_2417155_-	Uncharacterised protein	NA	A0A0A7NRX6	Enterobacteria_phage	89.9	1.6e-41
VED07750.1|2417151_2417418_-	Uncharacterized protein conserved in archaea	NA	A0A0A7NV47	Enterobacteria_phage	75.9	3.4e-30
VED07752.1|2417414_2417618_-	Uncharacterised protein	NA	A0A0A7NPS8	Enterobacteria_phage	82.1	4.2e-25
VED07754.1|2417641_2418058_-	Prophage protein	NA	NA	NA	NA	NA
VED07756.1|2418258_2418501_-	Uncharacterised protein	NA	A0A0A7NQ71	Enterobacteria_phage	98.8	5.2e-38
VED07758.1|2418512_2418800_-	Uncharacterised protein	NA	A0A0A7NRX5	Enterobacteria_phage	76.8	7.8e-33
VED07760.1|2418810_2419149_-	Uncharacterised protein	NA	A0A0A7NV42	Enterobacteria_phage	87.1	5.2e-52
VED07762.1|2419163_2419442_-	DNA-binding protein	NA	NA	NA	NA	NA
VED07764.1|2419537_2419849_+	phage repressor protein	NA	Q1JS21	Enterobacteria_phage	48.5	1.2e-18
VED07766.1|2419937_2420873_+|integrase	phage integrase	integrase	A0A0M4RTQ0	Salmonella_phage	50.8	5.6e-80
VED07768.1|2420883_2421279_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED07770.1|2421468_2422449_+	Vitamin B12 ABC transporter, permease protein	NA	NA	NA	NA	NA
2421386:2421410	attR	GGCCGCTCTGCGGCCTTTTTTCTTT	NA	NA	NA	NA
VED07772.1|2422510_2423062_+	vitamin B12 transport periplasmic protein (putative glutathione peroxidase)	NA	NA	NA	NA	NA
VED07774.1|2423061_2423811_+	vitamin B12 ABC transporter, ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	9.3e-09
>prophage 9
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	2539105	2606026	5167677	tail,integrase,head,lysis,terminase,protease,portal	Enterobacteria_phage(45.83%)	72	2546682:2546697	2575075:2575090
VED07997.1|2539105_2539927_-|protease	putative protease	protease	NA	NA	NA	NA
VED07999.1|2540202_2540511_-	acid shock protein	NA	NA	NA	NA	NA
VED08001.1|2540935_2542189_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VED08003.1|2542295_2543189_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VED08005.1|2543323_2544544_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
VED08007.1|2544668_2545364_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
VED08009.1|2545316_2546573_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
2546682:2546697	attL	CTTTAAGAGATAAAAA	NA	NA	NA	NA
VED08011.1|2546767_2547382_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	6.6e-29
VED08013.1|2547424_2548279_-	oxidoreductase, membrane subunit	NA	NA	NA	NA	NA
VED08015.1|2548280_2548898_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
VED08017.1|2548908_2551305_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.6	8.2e-208
VED08019.1|2551392_2553819_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	49.2	2.7e-214
VED08021.1|2554017_2554323_-	protein	NA	NA	NA	NA	NA
VED08023.1|2554394_2555141_+	lipoprotein	NA	NA	NA	NA	NA
VED08025.1|2555143_2555704_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VED08027.1|2555738_2556080_-	protein	NA	NA	NA	NA	NA
VED08029.1|2556214_2556541_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	54.5	2.9e-23
VED08031.1|2556746_2557961_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.5	2.8e-47
VED08033.1|2557972_2558992_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	25.9	7.4e-17
VED08035.1|2559049_2559178_+	protein, truncated	NA	NA	NA	NA	NA
VED08037.1|2559179_2560460_-|integrase	defective integrase; Qin prophage	integrase	B6DZ48	Enterobacteria_phage	62.3	1.9e-155
VED08039.1|2560494_2560731_-	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VED08041.1|2560818_2563290_-	exonuclease from phage origin	NA	A0A192Y6E0	Salmonella_phage	55.6	9.4e-58
VED08043.1|2563383_2563575_-	putative prophage protein	NA	NA	NA	NA	NA
VED08045.1|2563571_2563760_-	cell division inhibition protein	NA	NA	NA	NA	NA
VED08047.1|2564246_2564822_-	putative prophage protein	NA	NA	NA	NA	NA
VED08049.1|2564823_2564979_-	putative prophage protein	NA	M4QQ57	Salicola_phage	51.1	8.8e-07
VED08051.1|2565146_2565554_-	transcriptional repressor DicA	NA	I6PD69	Cronobacter_phage	51.9	1.2e-31
VED08053.1|2565634_2565862_+	DNA-binding transcriptional regulator DicC	NA	NA	NA	NA	NA
VED08056.1|2565845_2566367_+	YdfX	NA	NA	NA	NA	NA
VED08058.1|2566347_2567313_+	ybl78	NA	U5P0A0	Shigella_phage	60.8	2.6e-56
VED08060.1|2567353_2567752_+	phage protein	NA	A0A0U2QQN3	Escherichia_phage	93.2	2.9e-62
VED08062.1|2567954_2568620_+	putative prophage protein	NA	NA	NA	NA	NA
VED08064.1|2569228_2569480_+	putative prophage protein	NA	NA	NA	NA	NA
VED08066.1|2569826_2570876_+	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	57.0	2.2e-112
VED08068.1|2570889_2571642_+	lambdoid prophage Qin antitermination protein Q-like protein	NA	A0A192Y5X6	Salmonella_phage	92.8	9.3e-134
VED08070.1|2572063_2572276_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
VED08072.1|2573554_2573761_+|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.1	4.5e-30
VED08074.1|2573856_2574078_+	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	53.0	1.4e-08
VED08076.1|2574074_2574317_+	prophage lysozyme (endolysin)	NA	A0A0N7KZF9	Stx2-converting_phage	84.5	8.4e-28
VED08078.1|2574339_2574609_+	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	95.5	1.6e-48
VED08080.1|2574605_2575103_+	Qin prophage protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
2575075:2575090	attR	CTTTAAGAGATAAAAA	NA	NA	NA	NA
VED08082.1|2576352_2576526_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
VED08084.1|2576677_2577088_-	putative envelope protein	NA	C6ZCX4	Enterobacteria_phage	89.0	2.1e-63
VED08086.1|2577388_2577595_+	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	91.2	6.7e-26
VED08088.1|2577615_2577783_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED08090.1|2578175_2578703_+|terminase	putative terminase small subunit	terminase	A5LH26	Enterobacteria_phage	99.4	2.8e-92
VED08092.1|2578711_2580811_+|terminase	terminase large subunit	terminase	A5LH27	Enterobacteria_phage	96.6	0.0e+00
VED08094.1|2580807_2581020_+	prophage protein	NA	A5LH28	Enterobacteria_phage	98.6	3.2e-31
VED08096.1|2581019_2582528_+|head,tail,portal	portal protein (head-tail preconnector protein) from prophage	head,tail,portal	A5LH29	Enterobacteria_phage	99.4	7.8e-289
VED08098.1|2582472_2584500_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	K7PGT6	Enterobacteria_phage	99.5	0.0e+00
VED08100.1|2584586_2584910_+	prophage protein	NA	K7PLV6	Enterobacteria_phage	99.1	1.5e-51
VED08102.1|2584902_2585178_+	prophage protein	NA	K7PH43	Enterobacteria_phage	100.0	2.3e-45
VED08104.1|2585189_2585768_+|tail	Minor tail protein Z (GPZ) of prophage	tail	A5LH33	Enterobacteria_phage	99.5	1.2e-101
VED08106.1|2585764_2586166_+|tail	Minor tail protein U	tail	A5LH34	Enterobacteria_phage	99.2	1.9e-72
VED08108.1|2586176_2586920_+|tail	Major tail protein V	tail	A5LH35	Enterobacteria_phage	99.2	1.7e-132
VED08110.1|2586980_2587367_+|tail	minor tail component of prophage	tail	A0A291AWW5	Escherichia_phage	99.2	4.7e-65
VED08112.1|2587375_2587705_+|tail	minor tail protein T of prophage	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
VED08114.1|2587676_2590742_+|tail	putative tail length tape measure protein from putative prophage	tail	A0A291AWX1	Escherichia_phage	98.7	0.0e+00
VED08116.1|2590741_2591071_+|tail	Minor tail protein M	tail	A0A291AWW9	Escherichia_phage	100.0	1.7e-60
VED08118.1|2591080_2591779_+|tail	phage minor tail protein	tail	A5LH40	Enterobacteria_phage	99.1	5.1e-134
VED08119.1|2591928_2592528_+|tail	tail component	tail	A0A291AWX4	Escherichia_phage	97.5	3.9e-119
VED08121.1|2592524_2593073_+	Tail assembly protein I from prophage	NA	K7PH50	Enterobacteria_phage	95.6	7.1e-91
VED08123.1|2593133_2596613_+	Host specificity protein J of prophage	NA	A0A291AWT4	Escherichia_phage	90.3	0.0e+00
VED08125.1|2596680_2597280_+	putative prophage-encoded outer membrane protein	NA	Q9EV15	Enterobacteria_phage	92.5	6.8e-103
VED08127.1|2597344_2599744_+|tail	putative prophage side tail fiber protein	tail	A0A0E3M194	Enterobacteria_phage	55.2	3.9e-133
VED08129.1|2599740_2600022_+	putative prophage protein	NA	A0A1X7QHA1	Escherichia_phage	48.9	1.6e-17
VED08131.1|2600031_2600736_+	putative prophage protein	NA	A0A1X7QGH6	Escherichia_phage	61.7	9.2e-59
VED08133.1|2601267_2601858_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
VED08135.1|2602174_2602408_-	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
VED08137.1|2603193_2604477_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
VED08139.1|2604565_2606026_+	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	5.1e-43
>prophage 10
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	2968766	3016481	5167677	tRNA,tail,integrase,head,lysis,terminase,capsid	Enterobacteria_phage(55.0%)	68	2960957:2960972	3023832:3023847
2960957:2960972	attL	CTGTTTTCCAAAGCTA	NA	NA	NA	NA
VED08773.1|2968766_2969045_-	putative prophage protein	NA	A0A0E3JSQ1	Enterobacteria_phage	56.5	7.6e-25
VED08775.1|2969041_2971102_-|tail	side tail fiber protein homolog from lambdoid prophage	tail	A0A0E3M194	Enterobacteria_phage	53.4	2.0e-125
VED08777.1|2971160_2974643_-	Host specificity protein J of prophage	NA	A0A291AWT4	Escherichia_phage	89.5	0.0e+00
VED08779.1|2974703_2975276_-|tail	phage tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	99.5	3.0e-84
VED08781.1|2975272_2975872_-|tail	tail component	tail	C6ZCZ3	Enterobacteria_phage	98.5	1.6e-120
VED08783.1|2976021_2976720_-|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	97.8	4.0e-131
VED08785.1|2976719_2977049_-|tail	minor tail protein	tail	A0A2R9YJM0	Escherichia_phage	94.5	5.4e-54
VED08786.1|2977045_2979607_-|tail	tail component of prophage	tail	A0A0K2FI43	Enterobacteria_phage	94.5	0.0e+00
VED08788.1|2979599_2980034_-|tail	minor tail protein T	tail	A0A0K2FJB3	Enterobacteria_phage	90.0	9.0e-57
VED08790.1|2980015_2980438_-|tail	phage minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	91.4	2.7e-66
VED08792.1|2980453_2981194_-|tail	Major tail protein V	tail	A0A0K2FJ05	Enterobacteria_phage	95.9	3.7e-127
VED08794.1|2981201_2981597_-|tail	phage minor tail protein	tail	A0A2R9YJI2	Escherichia_phage	97.7	5.5e-69
VED08796.1|2981593_2982172_-|tail	Minor tail protein Z (GpZ)	tail	A0A2R9YJK4	Escherichia_phage	99.0	2.9e-79
VED08798.1|2982183_2982537_-|head,tail	head-tail joining protein of prophage	head,tail	A0A0K2FJB7	Enterobacteria_phage	65.0	3.4e-38
VED08800.1|2982529_2982904_-	DNA packaging protein from phage origin	NA	NA	NA	NA	NA
VED08802.1|2982955_2983984_-|head	phage major head protein	head	C6ZCY2	Enterobacteria_phage	61.6	5.9e-115
VED08804.1|2984041_2984389_-|head	phage head decoration protein	head	A0A2R9YJN3	Escherichia_phage	58.1	2.0e-22
VED08806.1|2984425_2985931_-|head,tail	phage head-tail preconnector protein [contains: scaffold protein]	head,tail	A0A2I6TC87	Escherichia_phage	53.7	3.6e-100
VED08808.1|2985920_2987513_-|capsid	capsid protein of prophage	capsid	K7P6U7	Enterobacteria_phage	60.9	4.2e-184
VED08810.1|2987509_2987716_-|head	phage head-stabilizing protein	head	K7PM10	Enterobacteria_phage	55.4	3.0e-10
VED08812.1|2987699_2989628_-|terminase	DNA packaging protein of prophage; terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	66.7	3.3e-260
VED08814.1|2989599_2990148_-	Terminase small subunit (gp1)	NA	A0A0U2S671	Escherichia_phage	84.2	1.0e-57
VED08816.1|2990623_2990977_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED08818.1|2991099_2991426_-	truncated TonB-like membrane protein encoded within prophage	NA	H6WZK5	Escherichia_phage	72.2	3.7e-39
VED08821.1|2991906_2992200_+	lambdoid prophage DLP12 Bor-like protein	NA	K7PL54	Enterobacteria_phage	92.8	7.0e-45
VED08823.1|2992231_2992693_-	Rz endopeptidase from lambdoid prophage DLP12	NA	A0A0K2FJD0	Enterobacteria_phage	98.0	2.1e-75
VED08825.1|2992689_2993187_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	97.0	5.4e-90
VED08827.1|2993186_2993402_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
VED08829.1|2993990_2995073_+	outer membrane porin protein NmpC	NA	Q1MVN1	Enterobacteria_phage	80.1	1.6e-166
VED08831.1|2995261_2995645_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	1.5e-55
VED08833.1|2995730_2995868_-	DLP12 prophage; small protein	NA	K7PHH3	Enterobacteria_phage	68.3	6.0e-07
VED08835.1|2995867_2996230_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	96.5	4.3e-60
VED08837.1|2996436_2996778_-	putative protein ninx	NA	Q76H72	Enterobacteria_phage	96.5	1.6e-61
VED08839.1|2996953_2997481_-	DNA N-6-adenine-methyltransferase of bacteriophage	NA	A0A1I9LJP9	Stx_converting_phage	99.4	4.7e-100
VED08841.1|2997477_2997918_-	recombination protein ninB from phage origin	NA	M1FPM8	Enterobacteria_phage	100.0	1.2e-80
VED08843.1|2997991_2998282_-	putative exclusion protein Ren of prophage	NA	O48423	Enterobacteria_phage	97.9	2.8e-46
VED08845.1|2998278_2998980_-	replication protein P of bacteriophage	NA	A0A0P0ZD31	Stx2-converting_phage	99.6	2.9e-129
VED08847.1|2998976_2999876_-	replication protein from bacteriophage origin	NA	K7P7F0	Enterobacteria_phage	99.0	3.5e-172
VED08849.1|2999908_3000205_-	regulatory protein	NA	G9L678	Escherichia_phage	94.9	2.2e-46
VED08851.1|3000346_3000562_-	repressor protein	NA	A0A0N7C2U7	Escherichia_phage	100.0	2.2e-35
VED08853.1|3000679_3001333_+	Repressor protein CI from phage origin	NA	A0A0N7BTS4	Escherichia_phage	100.0	6.2e-126
VED08855.1|3001372_3001930_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED08857.1|3001929_3002679_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
VED08859.1|3003115_3003388_+	putative transcription antitermination protein N of prophage	NA	A0A0N7C217	Escherichia_phage	98.9	2.8e-40
VED08861.1|3003404_3003986_-	putative superinfection exclusion protein B of prophage	NA	K7P6T7	Enterobacteria_phage	92.2	5.2e-92
VED08863.1|3004199_3004400_+	restriction alleviation protein	NA	A0A0K2FJE6	Enterobacteria_phage	98.5	7.1e-33
VED08865.1|3004582_3004951_+	putative single-stranded DNA binding protein of prophage	NA	M1FPD2	Enterobacteria_phage	100.0	2.0e-65
VED08867.1|3005156_3005300_+	Kil protein of bacteriphage BP-933W	NA	A0A0N7C2U2	Escherichia_phage	97.9	2.7e-18
VED08869.1|3005375_3005672_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	98.0	1.1e-48
VED08871.1|3005677_3006463_+	bacteriophage recombination protein	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
VED08873.1|3006459_3007140_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	99.1	5.1e-131
VED08875.1|3007136_3007319_+	phage protein	NA	A0A1U8QQC1	Enterobacteria_phage	96.7	6.9e-27
VED08877.1|3007291_3007483_+	phage protein	NA	A0A0P0ZC67	Stx2-converting_phage	98.4	2.1e-26
VED08879.1|3007493_3007775_+	ybl17	NA	A0A0P0ZE02	Stx2-converting_phage	98.9	5.5e-47
VED08881.1|3007873_3008095_+	putative C4-type zinc finger protein	NA	A0A1I9LJM6	Stx_converting_phage	97.3	8.4e-35
VED08883.1|3008091_3008856_+	putative EA22-like protein	NA	K7PKG8	Enterobacteria_phage	94.8	3.6e-56
VED08885.1|3008857_3009112_+	phage protein	NA	A5LH60	Enterobacteria_phage	91.1	1.7e-34
VED08887.1|3009129_3009663_+	Eaa protein	NA	Q1MVF7	Enterobacteria_phage	82.1	2.5e-64
VED08889.1|3009622_3009874_+	prophage protein	NA	Q9XJH3	Enterobacteria_phage	87.5	2.4e-33
VED08891.1|3009870_3010611_+	Eaa prophage protein	NA	K7PGV7	Enterobacterial_phage	67.1	6.5e-47
VED08893.1|3010603_3010888_+	phage related protein	NA	A0A2D1GLL3	Escherichia_phage	89.4	4.0e-45
VED08895.1|3010913_3011153_+	bacteriophage protein	NA	M1FPC8	Enterobacteria_phage	93.7	8.8e-38
VED08897.1|3011292_3011529_+	excisionase	NA	NA	NA	NA	NA
VED08899.1|3011518_3012661_+|integrase	prophage lambda integrase	integrase	Q77Z02	Phage_21	99.7	1.1e-205
VED08901.1|3012774_3014025_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
VED08903.1|3014196_3014850_+	ribosomal large subunit pseudouridine synthase E (rRNA pseudouridylate synthase E)	NA	NA	NA	NA	NA
VED08905.1|3014859_3015321_+	putative NUDIX-family hydrolase	NA	NA	NA	NA	NA
VED08907.1|3015374_3016481_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
3023832:3023847	attR	CTGTTTTCCAAAGCTA	NA	NA	NA	NA
>prophage 11
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	3130465	3172848	5167677	transposase	Stx2-converting_phage(25.0%)	44	NA	NA
VED09130.1|3130465_3130648_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	69.0	4.8e-20
VED09132.1|3130754_3132017_-	cobalamin synthesis protein	NA	NA	NA	NA	NA
VED09134.1|3132217_3133009_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA	NA
VED09136.1|3133027_3134998_-	putative outer membrane heme/hemoglobin receptor	NA	NA	NA	NA	NA
VED09138.1|3135343_3136237_+	Transposase for transposon Tn5	NA	NA	NA	NA	NA
VED09140.1|3136362_3136707_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VED09142.1|3136694_3136811_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED09144.1|3137269_3137704_-	putative inner membrane protein	NA	NA	NA	NA	NA
VED09146.1|3138623_3138941_+|transposase	transposase insG	transposase	NA	NA	NA	NA
VED09148.1|3139068_3139527_-|transposase	transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	5.5e-12
VED09150.1|3140541_3141657_+	IroB	NA	NA	NA	NA	NA
VED09152.1|3141796_3145456_+	IroC	NA	W8CYL7	Bacillus_phage	29.8	3.6e-45
VED09154.1|3145559_3146789_+	esterase	NA	NA	NA	NA	NA
VED09156.1|3146873_3147830_+	IroE protein	NA	NA	NA	NA	NA
VED09158.1|3147874_3150052_-	outer membrane receptor FepA	NA	NA	NA	NA	NA
VED09160.1|3150293_3151319_+|transposase	transposase	transposase	NA	NA	NA	NA
VED09162.1|3151644_3152145_-	PapX protein	NA	NA	NA	NA	NA
VED09164.1|3152342_3153083_-	putative EAL domain-containing protein	NA	NA	NA	NA	NA
VED09166.1|3153386_3154397_-	F1C fimbrial adhesin	NA	NA	NA	NA	NA
VED09168.1|3154347_3154851_-	S-fimbrial adhesin protein SfaS precursor	NA	NA	NA	NA	NA
VED09170.1|3154872_3155400_-	S-fimbrial adhesin protein SfaG	NA	NA	NA	NA	NA
VED09172.1|3155412_3158043_-	F1C fimbrial usher	NA	NA	NA	NA	NA
VED09174.1|3158112_3158808_-	F1C periplasmic chaperone	NA	NA	NA	NA	NA
VED09176.1|3158848_3159295_-	S fimbriae minor subunit SfaD	NA	NA	NA	NA	NA
VED09178.1|3159458_3160001_-	S fimbrial adhesin major subunit SfaA	NA	NA	NA	NA	NA
VED09180.1|3160107_3160200_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED09182.1|3160372_3160702_-	major pilu subunit operon regulatory protein PapB	NA	NA	NA	NA	NA
VED09184.1|3161120_3161342_+	F1C and S fimbrial switch regulatory protein	NA	NA	NA	NA	NA
VED09186.1|3161616_3162186_-	putative DNA-binding protein	NA	NA	NA	NA	NA
VED09188.1|3162427_3162940_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED09190.1|3163141_3163333_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED09192.1|3163397_3163856_+	membraneprotein	NA	NA	NA	NA	NA
VED09194.1|3164227_3164641_+	microcin M activity protein McmM	NA	NA	NA	NA	NA
VED09196.1|3165090_3165312_-	microcin M imunity protein McmI	NA	NA	NA	NA	NA
VED09198.1|3165347_3167444_-	microcin H47 secretion ATP-binding protein	NA	F2Y165	Organic_Lake_phycodnavirus	24.4	4.2e-14
VED09200.1|3167436_3168210_-	microcin H47 secretion protein	NA	NA	NA	NA	NA
VED09202.1|3168305_3168710_-	microcin H47 secretion protein	NA	NA	NA	NA	NA
VED09204.1|3168862_3169315_-	putative microcin H47 activating protein	NA	NA	NA	NA	NA
VED09206.1|3169340_3170891_-	putative microcin H47 biosynthesis protein	NA	NA	NA	NA	NA
VED09208.1|3171162_3171456_-	MchB protein	NA	NA	NA	NA	NA
VED09210.1|3171406_3171616_-	microcin H47 immunity protein	NA	NA	NA	NA	NA
VED09212.1|3171724_3171886_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED09214.1|3172027_3172273_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED09216.1|3172623_3172848_+|transposase	putative transposase	transposase	NA	NA	NA	NA
>prophage 12
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	3942460	4005469	5167677	integrase,protease,transposase	Enterobacteria_phage(20.0%)	57	3954227:3954243	3973536:3973552
VED10547.1|3942460_3942799_-|integrase	CP4-like integrase	integrase	E5AGD0	Erwinia_phage	48.6	5.6e-22
VED10549.1|3943170_3943530_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED10551.1|3943522_3944065_-	prophage protein	NA	NA	NA	NA	NA
VED10553.1|3944108_3944543_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED10555.1|3944545_3945001_-	phage protein	NA	A0A0N9SGM1	Paenibacillus_phage	34.2	1.9e-17
VED10557.1|3945322_3945508_-	putative prophage protein	NA	NA	NA	NA	NA
VED10558.1|3945805_3946087_-	Protein perC (Protein bfpW)	NA	NA	NA	NA	NA
VED10560.1|3946346_3946802_+	prophage protein	NA	A0A1W6JPI4	Morganella_phage	67.2	2.9e-45
VED10562.1|3946881_3947103_+	prophage protein	NA	H6WRV2	Salmonella_phage	41.5	1.4e-05
VED10564.1|3947709_3949815_-	putative prophage DNA transfer protein	NA	A0A2I7QQN9	Vibrio_phage	36.7	1.2e-90
VED10566.1|3949814_3951251_-	phage injection protein	NA	Q76H14	Enterobacteria_phage	64.0	2.6e-153
VED10568.1|3951255_3951429_-	prophage protein	NA	NA	NA	NA	NA
VED10570.1|3952012_3954769_-	putative prophage DNA primase	NA	A0A1W6JPG0	Morganella_phage	57.3	1.8e-299
3954227:3954243	attL	TTTATCCACCAGCGCCA	NA	NA	NA	NA
VED10571.1|3954781_3955384_-	putative prophage protein	NA	NA	NA	NA	NA
VED10573.1|3955376_3955598_-	putative prophage protein	NA	NA	NA	NA	NA
VED10575.1|3955594_3955858_-	putative prophage protein	NA	NA	NA	NA	NA
VED10577.1|3955854_3956049_-	putative prophage protein	NA	NA	NA	NA	NA
VED10579.1|3956041_3956260_-	putative prophage protein	NA	NA	NA	NA	NA
VED10581.1|3956252_3956447_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED10583.1|3957102_3957285_-	putative prophage protein	NA	NA	NA	NA	NA
VED10585.1|3957277_3958111_-	putative prophage protein	NA	G9L6G1	Escherichia_phage	47.5	5.3e-21
VED10587.1|3958123_3958555_-	putative prophage protein	NA	A0A1W6JPH9	Morganella_phage	49.0	3.9e-28
VED10589.1|3958554_3958758_-	putative phage transcriptional AlpA-like regulator	NA	A0A1V0E8E5	Vibrio_phage	50.9	4.7e-08
VED10591.1|3959185_3960400_-|integrase	prophage CPS-53 integrase	integrase	Q7M297	Enterobacteria_phage	56.2	1.3e-132
VED10593.1|3960755_3962009_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.0	1.7e-95
VED10595.1|3962020_3963124_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
VED10597.1|3963412_3964468_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	60.6	3.5e-118
VED10599.1|3964506_3964908_-	sigma factor-binding protein crl (curlin genes transcriptional activator)	NA	NA	NA	NA	NA
VED10601.1|3964965_3966210_-	esterase	NA	NA	NA	NA	NA
VED10603.1|3966301_3966760_-	xanthine-guanine phosphoribosyltransferase	NA	NA	NA	NA	NA
VED10605.1|3967020_3968478_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
VED10607.1|3968534_3969149_-	peptide chain release factor-like protein	NA	NA	NA	NA	NA
VED10609.1|3969145_3969616_-	RtcB protein	NA	NA	NA	NA	NA
VED10611.1|3969630_3970284_-	RtcB protein	NA	A0A222ZMP7	Mycobacterium_phage	33.8	1.2e-12
VED10613.1|3970473_3970848_-	putative acetyltransferase	NA	NA	NA	NA	NA
VED10615.1|3970922_3971978_-	DNA polymerase IV	NA	NA	NA	NA	NA
VED10617.1|3972048_3972684_-	Chemotaxis protein MotB	NA	NA	NA	NA	NA
VED10619.1|3972778_3974518_+	flagellar system protein	NA	NA	NA	NA	NA
3973536:3973552	attR	TGGCGCTGGTGGATAAA	NA	NA	NA	NA
VED10621.1|3974792_3975542_-	lipoprotein	NA	A0A1V0DZX6	Clostridioides_phage	37.7	1.5e-19
VED10623.1|3975853_3976594_+	membrane protein	NA	NA	NA	NA	NA
VED10625.1|3976564_3977332_-	amidotransferase	NA	NA	NA	NA	NA
VED10627.1|3977536_3978115_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
VED10629.1|3978354_3980799_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
VED10631.1|3980841_3981315_-	inhibitor of vertebrate lysozyme precursor	NA	NA	NA	NA	NA
VED10633.1|3981468_3982239_+	putative carbon-nitrogen hydrolase	NA	NA	NA	NA	NA
VED10635.1|3983100_3983565_+|transposase	transposase	transposase	NA	NA	NA	NA
VED10637.1|3983925_3984435_-	transcriptional regulator RcsB	NA	NA	NA	NA	NA
VED10639.1|3984456_3984939_-	Sigma-70, region 4	NA	NA	NA	NA	NA
VED10641.1|3985059_3989892_-	RTX family exoprotein A gene	NA	NA	NA	NA	NA
VED10643.1|3990090_3991338_-	membrane spanning export protein	NA	NA	NA	NA	NA
VED10645.1|3991398_3993546_-	putative ABC transporter	NA	F2Y2R6	Organic_Lake_phycodnavirus	26.9	4.2e-22
VED10647.1|3993570_3994731_-	outer membrane efflux protein	NA	NA	NA	NA	NA
VED10649.1|3995512_3995992_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED10651.1|3995988_3996303_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VED10653.1|3999226_4003342_+|protease	serine protease (autotransporter)	protease	Q9LA54	Enterobacteria_phage	45.7	0.0e+00
VED10655.1|4003588_4003861_+	adhesin biosynthesis transcription regulatory PapB family protein	NA	NA	NA	NA	NA
VED10657.1|4004344_4005469_-|transposase	transposase	transposase	A0A218MNI5	uncultured_virus	49.7	5.1e-51
>prophage 13
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	5167677	4023852	4074979	5167677	transposase	Stx2-converting_phage(30.77%)	56	NA	NA
VED10685.1|4023852_4024107_-|transposase	putative transposase (partial)	transposase	Q6H9S5	Enterobacteria_phage	62.2	8.0e-21
VED10687.1|4024528_4025542_-	Deoxyribose specific mutarotase	NA	NA	NA	NA	NA
VED10689.1|4025553_4026870_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VED10691.1|4026897_4027818_-	Deoxyribokinase	NA	NA	NA	NA	NA
VED10693.1|4028123_4028906_+	transcriptional regulator	NA	NA	NA	NA	NA
VED10695.1|4030444_4030903_+	membraneprotein	NA	NA	NA	NA	NA
VED10697.1|4031993_4032956_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED10699.1|4033066_4035301_-	exopolygalacturonate lyase	NA	NA	NA	NA	NA
VED10701.1|4035302_4036817_-	putative oligogalacturonide transporter	NA	NA	NA	NA	NA
VED10703.1|4037182_4037506_-	barrel cupin 2 domain-containing protein	NA	NA	NA	NA	NA
VED10705.1|4037560_4038361_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VED10707.1|4038390_4039371_-	putative oligogalacturonide lyase	NA	NA	NA	NA	NA
VED10709.1|4039821_4040460_+	ribose/galactose isomerase	NA	NA	NA	NA	NA
VED10711.1|4040779_4040977_-	transcriptional regulator	NA	NA	NA	NA	NA
VED10713.1|4041364_4041931_-	malate transporter	NA	NA	NA	NA	NA
VED10715.1|4042402_4042828_-	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VED10717.1|4042824_4043208_-	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VED10719.1|4043579_4044179_-	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA	NA
VED10721.1|4045625_4046417_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED10723.1|4046800_4047007_+	putative phage-related regulatory protein	NA	NA	NA	NA	NA
VED10725.1|4047100_4047703_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED10727.1|4049849_4049975_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED10729.1|4051200_4051938_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED10731.1|4052302_4052737_+	putative GTPase	NA	NA	NA	NA	NA
VED10733.1|4052954_4055351_+	putative vimentin	NA	NA	NA	NA	NA
VED10735.1|4055347_4056253_+	Methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
VED10737.1|4056249_4057320_+	patatin-like phospholipase family	NA	NA	NA	NA	NA
VED10739.1|4057448_4057916_+	CP4-57 prophage protein	NA	NA	NA	NA	NA
VED10741.1|4057971_4058601_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED10743.1|4058631_4058880_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED10745.1|4058879_4058999_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED10747.1|4059035_4059488_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED10749.1|4059605_4059839_+	putative plasmid-like protein	NA	NA	NA	NA	NA
VED10751.1|4059938_4060760_+	CP4-57 prophage protein	NA	A0A2C9CX26	Yersinia_phage	38.5	6.1e-46
VED10753.1|4060759_4061005_+	antirestriction protein	NA	NA	NA	NA	NA
VED10755.1|4061099_4061573_+	antirestriction protein	NA	A9J566	Pseudomonas_phage	31.2	4.3e-12
VED10757.1|4061588_4062065_+	putative DNA repair protein	NA	NA	NA	NA	NA
VED10759.1|4062127_4062349_+	CP4-44 prophage	NA	A0A142F0X9	Klebsiella_phage	45.8	8.5e-11
VED10761.1|4062367_4063012_+	antitoxin of the YeeV-YeeU toxin-antitoxin system	NA	A0A2I6PI07	Pseudomonas_phage	32.7	2.7e-25
VED10762.1|4062971_4063436_+	intergenic-region protein	NA	NA	NA	NA	NA
VED10764.1|4063482_4063860_+	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA	NA
VED10767.1|4063856_4064135_+	aec77	NA	NA	NA	NA	NA
VED10769.1|4064729_4065416_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VED10771.1|4065563_4065749_-|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	72.4	2.6e-21
VED10773.1|4065812_4066946_+|transposase	transposase, IS110 family protein	transposase	NA	NA	NA	NA
VED10775.1|4067055_4068006_-|transposase	putative transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	62.5	8.2e-95
VED10777.1|4067956_4068631_-|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.6	1.6e-39
VED10779.1|4068634_4068985_-|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	66.4	2.8e-40
VED10781.1|4069054_4069273_-|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	69.8	1.3e-19
VED10783.1|4069590_4070037_+	aec79	NA	NA	NA	NA	NA
VED10785.1|4070208_4070448_+	ybl125	NA	NA	NA	NA	NA
VED10787.1|4070777_4071518_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	38.6	7.7e-40
VED10789.1|4071573_4072041_+	ribonuclease H	NA	J9Q745	Salmonella_phage	58.7	1.4e-50
VED10791.1|4072037_4072760_-	S-adenosyl-L-methionine-dependent methyltransferase	NA	NA	NA	NA	NA
VED10793.1|4072793_4073549_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
VED10795.1|4073758_4074979_+	membrane-bound lytic murein transglycosylase D	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.0	5.2e-09
