assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636165.1_39130_C01	LR134233	Salmonella enterica subsp. enterica strain NCTC9684 genome assembly, chromosome: 1	1	935872-936388	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,8,8	8	TypeI-E	RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	NA|49aa|up_0|LR134233.1_935605_935752_+,NA	NA|162aa|up_9|LR134233.1_924953_925439_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|122aa|up_8|LR134233.1_925572_925938_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_7|LR134233.1_925963_926737_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|882aa|up_6|LR134233.1_926749_929395_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_5|LR134233.1_929528_930116_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_4|LR134233.1_930721_931522_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LR134233.1_931749_933387_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LR134233.1_933469_934768_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_1|LR134233.1_934903_935575_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|49aa|up_0|LR134233.1_935605_935752_+	NA	NA|266aa|down_0|LR134233.1_936485_937283_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LR134233.1_937372_937735_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|523aa|down_2|LR134233.1_938399_939968_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134233.1_939967_941680_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134233.1_941755_942490_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|290aa|down_5|LR134233.1_942785_943655_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|LR134233.1_944098_946762_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|518aa|down_7|LR134233.1_946773_948327_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|125aa|down_8|LR134233.1_948327_948702_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|63aa|down_9|LR134233.1_948698_948887_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCA_900636165.1_39130_C01	LR134233	Salmonella enterica subsp. enterica strain NCTC9684 genome assembly, chromosome: 1	2	952654-953231	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	NA,NA	cas3|888aa|up_9|LR134233.1_944098_946762_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|518aa|up_8|LR134233.1_946773_948327_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|125aa|up_7|LR134233.1_948327_948702_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|63aa|up_6|LR134233.1_948698_948887_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_5|LR134233.1_948900_949959_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_4|LR134233.1_949969_950716_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|83aa|up_3|LR134233.1_950697_950946_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas6e|144aa|up_2|LR134233.1_950915_951347_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|307aa|up_1|LR134233.1_951343_952264_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134233.1_952263_952557_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LR134233.1_953469_954516_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134233.1_954766_955675_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LR134233.1_955684_957124_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134233.1_957110_957716_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134233.1_957766_958090_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134233.1_958280_958592_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134233.1_958610_959321_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134233.1_959320_959800_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134233.1_959796_960846_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134233.1_960826_961588_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636165.1_39130_C01	LR134233	Salmonella enterica subsp. enterica strain NCTC9684 genome assembly, chromosome: 1	3	953305-953455	3	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	2	2	TypeI-E	RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	NA,NA	cas3|888aa|up_9|LR134233.1_944098_946762_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|518aa|up_8|LR134233.1_946773_948327_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|125aa|up_7|LR134233.1_948327_948702_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|63aa|up_6|LR134233.1_948698_948887_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_5|LR134233.1_948900_949959_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_4|LR134233.1_949969_950716_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|83aa|up_3|LR134233.1_950697_950946_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas6e|144aa|up_2|LR134233.1_950915_951347_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|307aa|up_1|LR134233.1_951343_952264_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134233.1_952263_952557_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LR134233.1_953469_954516_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134233.1_954766_955675_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LR134233.1_955684_957124_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134233.1_957110_957716_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134233.1_957766_958090_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134233.1_958280_958592_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134233.1_958610_959321_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134233.1_959320_959800_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134233.1_959796_960846_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134233.1_960826_961588_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636165.1_39130_C01	LR134233	Salmonella enterica subsp. enterica strain NCTC9684 genome assembly, chromosome: 1	5	3029672-3029779	4	CRISPRCasFinder	no		RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	Orphan	CAATAAATATCCTCCGGCATAGCC	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	NA,NA	NA|263aa|up_9|LR134233.1_3018752_3019541_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|492aa|up_8|LR134233.1_3019608_3021084_+	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional	NA|303aa|up_7|LR134233.1_3021254_3022163_+	COG4714, COG4714, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|339aa|up_6|LR134233.1_3022385_3023402_+	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional	NA|349aa|up_5|LR134233.1_3023412_3024459_+	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|383aa|up_4|LR134233.1_3024461_3025610_+	PRK05101, PRK05101, galactokinase; Provisional	NA|295aa|up_3|LR134233.1_3025757_3026642_+	PRK11055, galM, galactose-1-epimerase; Provisional	NA|251aa|up_2|LR134233.1_3026865_3027618_+	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|259aa|up_1|LR134233.1_3027708_3028485_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|360aa|up_0|LR134233.1_3028484_3029564_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|153aa|down_0|LR134233.1_3029865_3030324_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|233aa|down_1|LR134233.1_3030654_3031353_-	COG1767, CitG, Triphosphoribosyl-dephospho-CoA synthetase [Coenzyme metabolism]	NA|205aa|down_2|LR134233.1_3031471_3032086_-	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|178aa|down_3|LR134233.1_3032238_3032772_-	PRK15476, PRK15476, oxaloacetate decarboxylase subunit beta; Provisional	NA|379aa|down_4|LR134233.1_3032787_3033924_-	PRK14040, PRK14040, oxaloacetate decarboxylase subunit alpha	NA|196aa|down_5|LR134233.1_3033970_3034558_-	PRK14040, PRK14040, oxaloacetate decarboxylase subunit alpha	NA|82aa|down_6|LR134233.1_3034573_3034819_-	PRK02919, PRK02919, oxaloacetate decarboxylase subunit gamma; Provisional	NA|423aa|down_7|LR134233.1_3034868_3036137_-	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|309aa|down_8|LR134233.1_3036416_3037343_+	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT	NA|297aa|down_9|LR134233.1_3037343_3038234_-	COG0583, LysR, Transcriptional regulator [Transcription]
