assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636155.1_39111_D01	LR134232	Salmonella enterica subsp. enterica strain NCTC5741 genome assembly, chromosome: 1	1	1664358-1664486	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CTTGAATATGGCGGTGAGGGAGGGATTGACTCGCT	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|153aa|up_0|LR134232.1_1663865_1664324_+,NA	NA|551aa|up_9|LR134232.1_1651648_1653301_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|LR134232.1_1653444_1654344_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|553aa|up_7|LR134232.1_1654545_1656204_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|317aa|up_6|LR134232.1_1656200_1657151_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|373aa|up_5|LR134232.1_1657296_1658415_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_4|LR134232.1_1658411_1660358_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|74aa|up_3|LR134232.1_1660487_1660709_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|107aa|up_2|LR134232.1_1661032_1661353_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_1|LR134232.1_1661383_1663660_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|153aa|up_0|LR134232.1_1663865_1664324_+	NA	NA|226aa|down_0|LR134232.1_1665213_1665891_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|287aa|down_1|LR134232.1_1665910_1666771_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|304aa|down_2|LR134232.1_1666879_1667791_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|73aa|down_3|LR134232.1_1667881_1668100_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_4|LR134232.1_1668411_1669116_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_5|LR134232.1_1669160_1670882_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_6|LR134232.1_1670882_1672649_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|323aa|down_7|LR134232.1_1672762_1673731_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_8|LR134232.1_1674277_1674772_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1321aa|down_9|LR134232.1_1674906_1678869_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional
GCA_900636155.1_39111_D01	LR134232	Salmonella enterica subsp. enterica strain NCTC5741 genome assembly, chromosome: 1	2	3557692-3559370	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	27,27,26	27	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|LR134232.1_3549558_3550320_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|LR134232.1_3550300_3551350_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|LR134232.1_3551346_3551826_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|LR134232.1_3551825_3552536_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|LR134232.1_3552554_3552866_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|LR134232.1_3553056_3553380_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|LR134232.1_3553430_3554036_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|LR134232.1_3554022_3555462_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|LR134232.1_3555471_3556380_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|LR134232.1_3556630_3557677_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|LR134232.1_3559466_3559760_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|LR134232.1_3559759_3560680_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|LR134232.1_3560676_3561327_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|LR134232.1_3561308_3562055_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|LR134232.1_3562065_3563124_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|LR134232.1_3563137_3563698_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|LR134232.1_3563694_3565251_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|LR134232.1_3565262_3567926_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|LR134232.1_3568370_3569324_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|LR134232.1_3569411_3570146_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_900636155.1_39111_D01	LR134232	Salmonella enterica subsp. enterica strain NCTC5741 genome assembly, chromosome: 1	3	3575540-3576727	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CCGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,30,29	0	0	NA	NA	I-E:I-E:I-E:I-E	19,19,16,16	19	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	cse2gr11|187aa|up_9|LR134232.1_3563137_3563698_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_8|LR134232.1_3563694_3565251_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_7|LR134232.1_3565262_3567926_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_6|LR134232.1_3568370_3569324_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_5|LR134232.1_3569411_3570146_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_4|LR134232.1_3570247_3571960_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_3|LR134232.1_3571959_3573759_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_2|LR134232.1_3574193_3574556_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|143aa|up_1|LR134232.1_3574643_3575072_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|116aa|up_0|LR134232.1_3575094_3575442_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|LR134232.1_3577023_3577695_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|LR134232.1_3577830_3579129_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|LR134232.1_3579211_3580849_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|LR134232.1_3581076_3581877_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|LR134232.1_3582482_3583070_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|882aa|down_5|LR134232.1_3583203_3585849_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|LR134232.1_3585861_3586635_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|167aa|down_7|LR134232.1_3586660_3587161_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|162aa|down_8|LR134232.1_3587160_3587646_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|164aa|down_9|LR134232.1_3587687_3588179_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
