The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134229	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 1	205045	24256	54255	205045	transposase,integrase	uncultured_Caudovirales_phage(23.81%)	35	30805:30818	50018:50031
VEC75387.1|24256_24793_+|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	89.9	1.9e-56
VEC75388.1|24858_24999_+|transposase	putative transposase	transposase	Q9MCT5	Escherichia_phage	89.1	8.0e-15
VEC75389.1|25043_25316_-	glutathione S-transferase	NA	NA	NA	NA	NA
VEC75390.1|25496_26894_-	dihydrolipoamide dehydrogenase	NA	NA	NA	NA	NA
VEC75391.1|26883_28419_-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form	NA	NA	NA	NA	NA
VEC75392.1|28422_29442_-	transketolase	NA	NA	NA	NA	NA
VEC75393.1|29453_30413_-	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA	NA
VEC75394.1|30666_32787_+	Transcriptional activator of maltose regulon, MalT	NA	NA	NA	NA	NA
30805:30818	attL	CTTCTTCAGCTTCT	NA	NA	NA	NA
VEC75395.1|32731_33433_+	two component LuxR family transcriptional regulator	NA	NA	NA	NA	NA
VEC75396.1|33581_33857_+|transposase	IS1 transposase orfA	transposase	Q71TE9	Escherichia_phage	96.7	1.7e-45
VEC75397.1|33901_34279_+|transposase	IS1 transposase orfB	transposase	Q71TF0	Escherichia_phage	99.2	1.9e-66
VEC75398.1|34437_35400_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	30.5	8.8e-12
VEC75399.1|36542_36884_+|integrase	integrase family protein	integrase	NA	NA	NA	NA
VEC75400.1|36849_37284_+|integrase	integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	58.6	3.1e-25
VEC75401.1|37981_38992_-	initiator RepB protein	NA	J9Q7H0	Salmonella_phage	54.3	3.0e-87
VEC75402.1|39742_40909_+	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.7	3.0e-224
VEC75403.1|40908_41880_+	plasmid-partitioning protein SopB	NA	I3WF22	Macacine_betaherpesvirus	86.3	1.0e-148
VEC75404.1|42833_43043_-|transposase	IS1 transposase orfB	transposase	U5P0U6	Shigella_phage	100.0	4.4e-33
VEC75405.1|43064_43337_-|transposase	putative transposase	transposase	U5P0U6	Shigella_phage	91.7	1.4e-39
VEC75406.1|43665_44091_-	Arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	2.8e-50
VEC75407.1|44103_45021_-	Arsenical pump membrane protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	71.0	2.2e-116
VEC75408.1|45058_45394_-	Arsenical pump membrane protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	77.5	8.6e-31
VEC75409.1|45440_46292_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VEC75410.1|46233_47076_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VEC75411.1|47440_47575_-	arsenical resistance operon trans-acting repressor ArsD	NA	NA	NA	NA	NA
VEC75412.1|47619_47973_-	ArsR family transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	48.7	1.1e-23
VEC75413.1|48377_48680_+|transposase	transposase IS3/IS911 family protein	transposase	Q716C1	Shigella_phage	93.0	5.7e-42
VEC75414.1|48706_49546_+|integrase	integrase catalytic subunit	integrase	Q716C2	Shigella_phage	89.6	4.1e-154
VEC75415.1|49556_49655_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75416.1|49825_50113_-	addiction module antitoxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	47.4	1.3e-19
50018:50031	attR	CTTCTTCAGCTTCT	NA	NA	NA	NA
VEC75417.1|50109_50301_-	putative antitoxin of the YafO-YafN toxin-antitoxin system	NA	NA	NA	NA	NA
VEC75418.1|50526_51801_-	SOS mutagenesis and repair protein UmuC	NA	F1C5A5	Cronobacter_phage	62.4	2.3e-153
VEC75419.1|51800_52226_-	umuDC operon protein-like protein	NA	A0A1W6JNS2	Morganella_phage	54.3	6.4e-31
VEC75420.1|52435_52666_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75421.1|53553_54255_+	DNA methylase family protein	NA	A0A2I7RE86	Vibrio_phage	34.4	1.6e-23
>prophage 2
LR134229	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 1	205045	106593	181496	205045	transposase,protease,integrase	Shigella_phage(21.88%)	81	123762:123779	162056:162073
VEC75501.1|106593_107517_-|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	92.2	4.3e-165
VEC75502.1|107692_108148_-	peptidase M24	NA	NA	NA	NA	NA
VEC75503.1|108159_108696_-	Creatinase	NA	NA	NA	NA	NA
VEC75504.1|108692_108902_-	Creatinase	NA	NA	NA	NA	NA
VEC75505.1|108988_109942_-	Glycine cleavage system transcriptional activator GcvA	NA	Q6JIH3	Burkholderia_virus	24.3	1.3e-10
VEC75506.1|110098_110947_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEC75507.1|110970_111642_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA	NA
VEC75508.1|111638_112301_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA	NA
VEC75509.1|112305_113124_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	38.3	1.5e-28
VEC75510.1|113120_114086_+	membrane protein	NA	NA	NA	NA	NA
VEC75511.1|114228_114933_+|transposase	transposase	transposase	A0A077SL39	Escherichia_phage	99.6	9.0e-139
VEC75512.1|114966_115389_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75513.1|115951_117472_+	catalase	NA	A0A2K9L0T1	Tupanvirus	44.7	8.6e-94
VEC75514.1|117619_118543_+|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	96.1	5.2e-171
VEC75515.1|119162_121385_-	family 2 glycosyl transferase	NA	NA	NA	NA	NA
VEC75516.1|121483_121771_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75517.1|121776_122292_+	Exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
VEC75518.1|122613_123129_+|transposase	putative transposase	transposase	U5P0U6	Shigella_phage	98.8	5.1e-91
VEC75519.1|123063_123720_-	Putative papain-like cysteine peptidase (DUF1796)	NA	E5AGC9	Erwinia_phage	39.6	8.9e-32
123762:123779	attL	AATTATCCTACGCTAAGC	NA	NA	NA	NA
VEC75520.1|124480_125086_-	resolvase domain-containing protein	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
VEC75521.1|125128_125890_+|transposase	TnpA transposase	transposase	NA	NA	NA	NA
VEC75522.1|125856_126312_+|transposase	Tn3-family transposase	transposase	NA	NA	NA	NA
VEC75523.1|126366_128079_+|transposase	TnpA transposase	transposase	A0A1B0V7H9	Salmonella_phage	42.1	1.2e-123
VEC75524.1|128111_128657_-|integrase	integrase	integrase	U5P429	Shigella_phage	54.5	3.5e-50
VEC75525.1|128698_128983_-|transposase	transposase	transposase	U5P4I9	Shigella_phage	44.8	8.9e-13
VEC75526.1|129171_130140_+	Transposase	NA	A0A1S7J231	Thermus_phage	28.4	6.0e-16
VEC75527.1|130981_132142_-|integrase	integrase catalytic subunit	integrase	W5R8L2	Staphylococcus_phage	38.9	4.9e-41
VEC75528.1|132386_133310_-|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	96.1	9.0e-171
VEC75529.1|133356_133872_-	Transposase	NA	NA	NA	NA	NA
VEC75530.1|133971_134253_+	DNA binding domain, excisionase family	NA	NA	NA	NA	NA
VEC75531.1|134287_134857_+	heat shock protein Hsp20	NA	NA	NA	NA	NA
VEC75532.1|134962_135529_+	ATPase	NA	NA	NA	NA	NA
VEC75533.1|136048_137296_+	ATPase	NA	K4FB40	Cronobacter_phage	40.9	2.1e-69
VEC75534.1|137556_138009_+	ATPase	NA	NA	NA	NA	NA
VEC75535.1|138044_138848_+|protease	ATP-dependent metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	33.9	1.2e-14
VEC75536.1|138958_139306_+	heat shock protein Hsp20	NA	NA	NA	NA	NA
VEC75537.1|139271_139418_+	Hsp20/alpha crystallin family	NA	NA	NA	NA	NA
VEC75538.1|139440_140355_+	YfdX protein	NA	NA	NA	NA	NA
VEC75539.1|140457_141345_+	YfdX protein	NA	NA	NA	NA	NA
VEC75540.1|141434_142076_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEC75541.1|142124_143270_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75542.1|143259_143700_+	thioredoxin 2	NA	A0A023NHA9	Dinoroseobacter_phage	34.7	5.8e-11
VEC75543.1|143703_145413_+	glutathione-regulated potassium-efflux system protein kefC	NA	NA	NA	NA	NA
VEC75544.1|145415_145913_+	Predicted membrane protein	NA	NA	NA	NA	NA
VEC75545.1|145909_146356_+|protease	Zn-dependent protease with chaperone function	protease	NA	NA	NA	NA
VEC75546.1|146372_147044_+|protease	Zn-dependent protease with chaperone function	protease	NA	NA	NA	NA
VEC75547.1|147146_147749_+|protease	serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	37.5	1.0e-21
VEC75548.1|147687_148038_+|protease	Putative serine protease HhoB precursor	protease	NA	NA	NA	NA
VEC75549.1|148175_151181_-|transposase	transposon Tn3 transposase	transposase	Q1MVP5	Enterobacteria_phage	64.1	0.0e+00
VEC75550.1|151344_151914_+|integrase	Resolvase/integrase Bin	integrase	Q1MVP4	Enterobacteria_phage	47.8	2.0e-40
VEC75551.1|151921_152398_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75552.1|152476_152950_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75553.1|153405_154632_+	Predicted ATPase	NA	NA	NA	NA	NA
VEC75554.1|154668_155382_+	Predicted ATPase	NA	NA	NA	NA	NA
VEC75555.1|155705_156095_-|transposase	putative transposase	transposase	A0A077K814	Ralstonia_phage	54.9	4.3e-26
VEC75556.1|156325_157321_+	Transposase	NA	A0A1S7J231	Thermus_phage	28.3	7.0e-20
VEC75557.1|157573_158479_-|transposase	putative transposase	transposase	Q9ZXG3	Shigella_phage	95.3	2.2e-169
VEC75558.1|158436_158802_-|transposase	IS2 transposase orfA	transposase	Q76S41	Shigella_phage	100.0	9.6e-60
VEC75559.1|159428_159656_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75560.1|159729_159987_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75561.1|160786_161989_-|transposase	transposase	transposase	NA	NA	NA	NA
VEC75562.1|162165_162372_-|transposase	transposase Tn3 family protein	transposase	A0A1B0V7H9	Salmonella_phage	61.8	1.6e-11
162056:162073	attR	AATTATCCTACGCTAAGC	NA	NA	NA	NA
VEC75563.1|162718_163243_+|transposase	putative transposase	transposase	U5P0U6	Shigella_phage	98.2	6.8e-91
VEC75564.1|163244_163607_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75565.1|164328_165081_+	Transposase and inactivated derivatives	NA	NA	NA	NA	NA
VEC75566.1|165514_166360_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEC75567.1|166370_167030_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA	NA
VEC75568.1|167026_167668_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA	NA
VEC75569.1|167669_168485_+	glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.8	8.0e-30
VEC75570.1|169049_169736_+	hydantoinase/carbamoylase family amidase	NA	NA	NA	NA	NA
VEC75571.1|169732_170434_+	urea carboxylase-associated protein 1	NA	NA	NA	NA	NA
VEC75572.1|170479_171079_+	Putrescine utilization regulator	NA	NA	NA	NA	NA
VEC75573.1|171412_171538_+|transposase	IS3 family transposase orfA	transposase	NA	NA	NA	NA
VEC75574.1|171633_172296_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75575.1|172298_172877_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75576.1|173405_173681_+|transposase	IS1 transposase orfA	transposase	Q71TE9	Escherichia_phage	94.5	5.0e-45
VEC75577.1|173834_174101_+|transposase	IS1 transposase orfB	transposase	U5P0U6	Shigella_phage	97.7	5.9e-43
VEC75578.1|174321_175575_-	galactoside permease	NA	NA	NA	NA	NA
VEC75579.1|175626_178701_-	beta-D-galactosidase	NA	L0N6M2	Herpes_simplex_virus	95.9	0.0e+00
VEC75580.1|178822_179971_-	lac repressor	NA	C6ZCU4	Enterobacteria_phage	96.1	2.7e-185
VEC75581.1|180491_181496_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	5409203	21424	69659	5409203	protease,tRNA	uncultured_Mediterranean_phage(23.08%)	63	NA	NA
VEC75643.1|21424_21637_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	NA	NA	NA	NA
VEC75644.1|21600_22344_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.4	1.2e-51
VEC75645.1|22369_22702_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	2.8e-10
VEC75646.1|22761_22878_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75647.1|23404_24232_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
VEC75648.1|24204_24573_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
VEC75649.1|24583_25555_+	protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	38.1	1.2e-45
VEC75650.1|25668_27060_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
VEC75651.1|27190_27526_+	Glyoxalase family protein	NA	NA	NA	NA	NA
VEC75652.1|27573_27978_+	Transcriptional regulator, DeoR family	NA	NA	NA	NA	NA
VEC75653.1|27943_28270_+	Transcriptional regulator, DeoR family	NA	NA	NA	NA	NA
VEC75654.1|28321_29017_-	Nucleoside-specific channel-forming protein Tsx precursor	NA	NA	NA	NA	NA
VEC75655.1|28994_29207_-	Nucleoside-specific channel-forming protein, Tsx-like protein	NA	NA	NA	NA	NA
VEC75656.1|29500_30043_-	Hypothetical lipoprotein yajI	NA	NA	NA	NA	NA
VEC75657.1|30191_30641_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
VEC75658.1|30644_31748_+	Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1V0SE20	Indivirus	34.6	2.9e-51
VEC75659.1|31960_32431_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	47.4	1.7e-29
VEC75660.1|32453_32873_+	transcription antitermination protein NusB	NA	NA	NA	NA	NA
VEC75661.1|32949_33123_+	Thiamine-monophosphate kinase	NA	NA	NA	NA	NA
VEC75662.1|33097_33925_+	Thiamine-monophosphate kinase	NA	NA	NA	NA	NA
VEC75663.1|33953_34421_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
VEC75664.1|34470_35094_-	Putative oxidoreductase	NA	NA	NA	NA	NA
VEC75665.1|35096_35444_-	Putative oxidoreductase	NA	NA	NA	NA	NA
VEC75666.1|35511_37308_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
VEC75667.1|37389_37716_-	Dimethylallyltransferase @ (2E, 6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
VEC75668.1|37693_38290_-	Dimethylallyltransferase @ (2E, 6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
VEC75669.1|38290_38596_-	Exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
VEC75670.1|38834_39320_+|tRNA	tRNA s(4)U8 sulfurtransferase	tRNA	NA	NA	NA	NA
VEC75671.1|39369_40281_+|tRNA	tRNA s(4)U8 sulfurtransferase	tRNA	NA	NA	NA	NA
VEC75672.1|40347_40941_-	DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31	NA	NA	NA	NA	NA
VEC75673.1|40903_41815_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VEC75674.1|42013_42505_+	protein YajQ	NA	NA	NA	NA	NA
VEC75675.1|42574_43939_-	Putative transport protein	NA	NA	NA	NA	NA
VEC75676.1|44095_45274_-	oxidoreductase	NA	NA	NA	NA	NA
VEC75677.1|45719_46748_-	protein YjhC	NA	NA	NA	NA	NA
VEC75678.1|46744_48016_-	4-hydroxybenzoate transporter	NA	NA	NA	NA	NA
VEC75679.1|48118_48937_-	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
VEC75680.1|49003_49240_-	3-oxosteroid 1-dehydrogenase	NA	NA	NA	NA	NA
VEC75681.1|49197_50706_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	26.0	3.3e-13
VEC75682.1|50716_51037_-	NIPSNAP	NA	NA	NA	NA	NA
VEC75683.1|51033_52728_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
VEC75684.1|52724_53546_-	Shikimate 5-dehydrogenase I alpha	NA	NA	NA	NA	NA
VEC75685.1|53698_54457_+	Pca regulon regulatory protein PcaR	NA	NA	NA	NA	NA
VEC75686.1|54508_55396_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
VEC75687.1|55407_55737_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
VEC75688.1|55736_56348_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
VEC75689.1|56337_57105_-	cytochrome-c oxidase	NA	NA	NA	NA	NA
VEC75690.1|57064_58330_-	cytochrome-c oxidase	NA	NA	NA	NA	NA
VEC75691.1|58349_59297_-	cytochrome o ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
VEC75692.1|59777_61253_-	AmpG permease	NA	NA	NA	NA	NA
VEC75693.1|61296_61875_-	Hypothetical lipoprotein YajG precursor	NA	NA	NA	NA	NA
VEC75694.1|62015_62108_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC75695.1|62305_62620_+	BolA	NA	NA	NA	NA	NA
VEC75696.1|62962_64261_+	trigger factor	NA	NA	NA	NA	NA
VEC75697.1|64619_65243_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.4	1.1e-63
VEC75698.1|65375_66011_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.7	4.1e-58
VEC75699.1|65992_66502_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.1	3.5e-44
VEC75700.1|66828_67260_+|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	34.3	5.7e-11
VEC75701.1|67280_67517_+|protease	DNA-binding ATP-dependent protease La	protease	NA	NA	NA	NA
VEC75702.1|67525_67660_+|protease	DNA-binding ATP-dependent protease La	protease	NA	NA	NA	NA
VEC75703.1|67730_68687_+|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	66.9	4.2e-107
VEC75704.1|68640_69180_+|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	61.3	1.1e-54
VEC75705.1|69386_69659_+	transcriptional regulator HU subunit beta	NA	A3E2K9	Sodalis_phage	61.8	8.5e-21
>prophage 2
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	5409203	661678	672360	5409203	tRNA	Escherichia_phage(50.0%)	7	NA	NA
VEC76493.1|661678_665758_+	cell division protein	NA	S5VNE3	Mycobacterium_phage	49.2	8.5e-88
VEC76495.1|665881_666493_+	Outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
VEC76497.1|666501_667845_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	41.5	1.7e-82
VEC76499.1|667936_669229_+|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.2	6.2e-93
VEC76501.1|669430_671098_+	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	52.2	7.8e-141
VEC76503.1|671063_671870_+	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	44.9	9.2e-63
VEC76505.1|671880_672360_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.0	1.0e-53
>prophage 3
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	5409203	711950	721440	5409203	tRNA	Enterobacteria_phage(28.57%)	10	NA	NA
VEC76592.1|711950_712598_+	Hypothetical metal-binding enzyme, YcbL homolog	NA	A0A1X9I5D3	Streptococcus_phage	29.1	9.1e-21
VEC76594.1|712663_713356_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
VEC76596.1|713352_713856_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
VEC76598.1|714039_714876_-	Outer membrane protein F precursor	NA	Q1MVN1	Enterobacteria_phage	52.8	1.1e-74
VEC76600.1|714901_715120_-	Outer membrane protein F precursor	NA	Q1MVN1	Enterobacteria_phage	51.7	1.3e-08
VEC76602.1|715711_716200_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9KZD3	Tupanvirus	49.0	1.3e-30
VEC76604.1|716138_717113_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9V902	Bandra_megavirus	32.1	1.5e-43
VEC76606.1|717290_718493_-	Nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	30.6	1.2e-42
VEC76608.1|718823_719474_+	Membrane alanine aminopeptidase N	NA	NA	NA	NA	NA
VEC76610.1|719505_721440_+	Membrane alanine aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	26.1	6.1e-12
>prophage 4
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	5409203	1621900	1635110	5409203		Escherichia_phage(50.0%)	16	NA	NA
VEC78812.1|1621900_1622233_-	Ferric siderophore transport system, periplasmic binding protein TonB	NA	H6WZK5	Escherichia_phage	46.2	2.3e-20
VEC78814.1|1622383_1622812_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
VEC78816.1|1622890_1623301_-	Probable secreted protein	NA	NA	NA	NA	NA
VEC78818.1|1623759_1624824_-	Transcriptional repressor of the lac operon	NA	C6ZCU4	Enterobacteria_phage	45.4	1.3e-67
VEC78820.1|1625044_1628152_+	Beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
VEC78822.1|1628338_1629328_+	Lactose permease	NA	NA	NA	NA	NA
VEC78824.1|1629311_1629605_+	Lactose permease	NA	NA	NA	NA	NA
VEC78826.1|1629624_1629972_-	putative RecF protein	NA	A0A077SLJ9	Escherichia_phage	82.1	2.7e-35
VEC78828.1|1629973_1630750_-	putative RecF protein	NA	A0A077SLJ9	Escherichia_phage	82.4	3.7e-117
VEC78830.1|1630851_1631169_-	Uncharacterised protein	NA	A0A077SK33	Escherichia_phage	84.0	2.0e-29
VEC78832.1|1631407_1631812_+	Beta-lactamase	NA	Q38212	Enterobacteria_phage	70.1	8.7e-46
VEC78834.1|1631808_1632282_+	Beta-lactamase	NA	A0A077SL40	Escherichia_phage	69.1	2.1e-54
VEC78836.1|1632391_1632622_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78837.1|1633007_1633250_+	DinI family protein	NA	Q6UAW0	Klebsiella_phage	79.7	8.1e-31
VEC78839.1|1633489_1634017_-	Dipeptidyl carboxypeptidase Dcp	NA	NA	NA	NA	NA
VEC78841.1|1633958_1635110_-	dipeptidyl carboxypeptidase II	NA	A0A1V0SIU1	Klosneuvirus	23.5	3.5e-07
>prophage 5
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	5409203	1646021	1694566	5409203	terminase,tail,lysis,coat,integrase	Enterobacteria_phage(27.66%)	66	1640103:1640117	1694183:1694197
1640103:1640117	attL	ACTACCATACAAGAA	NA	NA	NA	NA
VEC78877.1|1646021_1647554_-|tail	T7 tail fiber protein	tail	A0A127KNR5	Pseudomonas_phage	39.3	6.3e-12
VEC78879.1|1647610_1650670_-	Uncharacterised protein	NA	A0A286S259	Klebsiella_phage	77.6	0.0e+00
VEC78881.1|1650666_1651047_-	COG2116: Formate/nitrite family of transporters	NA	A0A286S2A6	Klebsiella_phage	88.9	1.3e-64
VEC78883.1|1651056_1651539_-	Domain of uncharacterised function (DUF1833)	NA	A0A286S2B1	Klebsiella_phage	80.4	3.7e-67
VEC78885.1|1651535_1651757_-	alkanesulfonate ABC transporter permease	NA	A0A286S298	Klebsiella_phage	52.9	1.0e-19
VEC78887.1|1651767_1652001_-	alkanesulfonate ABC transporter permease	NA	A0A286S298	Klebsiella_phage	63.8	5.2e-19
VEC78889.1|1652135_1653521_-|tail	prothage tail length tape measure	tail	A0A220VZA0	Acinetobacter_phage	28.6	9.7e-20
VEC78891.1|1653576_1654818_-|tail	prothage tail length tape measure	tail	A0A192Y7S1	Enterobacteria_phage	37.5	4.7e-58
VEC78893.1|1655672_1656356_-	Uncharacterised protein	NA	A0A0R6PJY5	Moraxella_phage	42.8	1.3e-41
VEC78895.1|1656739_1657240_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78897.1|1657294_1657867_-	Bacterial Ig-like domain (group 2)	NA	NA	NA	NA	NA
VEC78899.1|1657944_1658466_-	Uncharacterised protein	NA	A0A059VG08	Pseudomonas_phage	43.5	6.2e-28
VEC78901.1|1658488_1658881_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78903.1|1658877_1659429_-	Uncharacterised protein	NA	G8C7Q1	Escherichia_phage	39.9	3.5e-29
VEC78905.1|1659461_1659629_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78907.1|1659628_1660012_-	Uncharacterised protein	NA	A0A0S2SYG4	Pseudomonas_phage	44.4	1.6e-20
VEC78909.1|1660013_1660424_-	Uncharacterised protein	NA	A0A0H5AUF0	Pseudomonas_phage	41.2	1.2e-10
VEC78911.1|1660427_1660712_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78913.1|1660758_1661895_-|coat	P22 coat protein - gene protein 5	coat	G8C7P7	Escherichia_phage	73.5	1.4e-152
VEC78915.1|1661980_1662745_-	Uncharacterised protein	NA	G8C7P6	Escherichia_phage	68.5	6.4e-90
VEC78917.1|1662847_1663216_-	Phage Mu protein F like protein.	NA	G8C7P5	Escherichia_phage	56.4	2.8e-35
VEC78919.1|1663292_1663871_-	Phage Mu protein F like protein.	NA	I6PD76	Cronobacter_phage	50.0	2.1e-40
VEC78921.1|1664037_1664646_-	Uncharacterised protein	NA	G8C7P4	Escherichia_phage	81.0	1.1e-65
VEC78923.1|1664642_1664894_-	Uncharacterised protein	NA	G8C7P4	Escherichia_phage	67.6	2.2e-23
VEC78925.1|1664982_1665396_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78927.1|1665517_1666453_-	Uncharacterised protein	NA	G8C7P3	Escherichia_phage	90.7	1.4e-166
VEC78929.1|1666430_1666697_-	Uncharacterised protein	NA	G8C7P3	Escherichia_phage	91.8	3.8e-42
VEC78931.1|1666923_1667373_-|terminase	Phage terminase small subunit	terminase	I6PDJ6	Cronobacter_phage	75.4	1.4e-44
VEC78933.1|1669038_1669407_-	lysozyme from lambdoid prophage DLP12	NA	M9P0E5	Enterobacteria_phage	86.7	3.3e-44
VEC78935.1|1669520_1669745_-|lysis	lysis S family protein	lysis	M9NZI9	Enterobacteria_phage	87.8	6.3e-30
VEC78937.1|1670294_1670501_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78939.1|1670542_1671295_-	putative late gene regulator	NA	M9NZB0	Enterobacteria_phage	70.4	2.2e-90
VEC78941.1|1671291_1671435_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78943.1|1671448_1671793_-	endodeoxyribonuclease RusA	NA	K7P6W0	Enterobacteria_phage	60.9	8.2e-37
VEC78945.1|1671789_1672086_-	protein YbcO	NA	A0A0U2KD41	Escherichia_phage	77.7	3.2e-37
VEC78947.1|1672293_1672893_-	Protein of uncharacterised function (DUF1367)	NA	K7PKS6	Enterobacteria_phage	81.4	9.2e-92
VEC78949.1|1673285_1673519_-	DNA-damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	76.6	1.8e-27
VEC78951.1|1673598_1673916_-	DNA polymerase III subunit theta	NA	G8C7V1	Escherichia_phage	75.4	3.7e-23
VEC78953.1|1673955_1674153_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78955.1|1674846_1675632_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78957.1|1675721_1676192_-	Uncharacterised protein	NA	Q716F4	Shigella_phage	46.4	2.4e-10
VEC78959.1|1676202_1676955_-	Uncharacterised protein	NA	M1FN76	Enterobacteria_phage	84.4	2.5e-126
VEC78961.1|1677065_1677356_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78963.1|1677339_1677684_-	Bacterial protein of uncharacterised function (DUF977)	NA	H6WRX9	Salmonella_phage	42.0	4.4e-14
VEC78965.1|1677691_1678411_-	DNA replication protein DnaC	NA	H6WRX8	Salmonella_phage	84.0	4.2e-115
VEC78967.1|1678439_1679369_-	Uncharacterised protein	NA	Q8HA96	Salmonella_phage	46.7	2.0e-24
VEC78969.1|1679391_1679706_-	HNH endonuclease	NA	NA	NA	NA	NA
VEC78971.1|1679997_1680534_-	regulatory protein CII from bacteriophage origin	NA	K7PJT7	Enterobacteria_phage	72.1	1.5e-64
VEC78973.1|1680536_1680770_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	A0A0M4QX15	Salmonella_phage	61.6	6.2e-20
VEC78975.1|1680979_1681270_+	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	69.8	1.7e-30
VEC78977.1|1681462_1683070_+	Uncharacterised protein	NA	A0A1S5SA14	Streptococcus_phage	47.0	9.0e-94
VEC78979.1|1683776_1683878_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78981.1|1683870_1683984_+	Gifsy-1 prophage protein	NA	NA	NA	NA	NA
VEC78983.1|1683980_1684172_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA	NA
VEC78985.1|1684180_1684339_+	Uncharacterised protein	NA	K7P7H7	Enterobacteria_phage	59.6	2.2e-13
VEC78987.1|1684476_1687413_+	putative exodeoxyribonuclease VIII	NA	H6WRX1	Salmonella_phage	59.5	2.5e-299
VEC78989.1|1687424_1688534_+	recombinase, RecT family protein	NA	H6WRX0	Salmonella_phage	86.4	2.9e-184
VEC78991.1|1688568_1689051_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC78993.1|1689157_1689358_+	Uncharacterised protein	NA	I6PD68	Cronobacter_phage	57.6	5.3e-12
VEC78995.1|1689365_1689608_+	bacteriophage protein	NA	M9P0E0	Enterobacteria_phage	71.4	3.6e-23
VEC78997.1|1689660_1689942_+	putative phage excisionase	NA	A0A286S2A4	Klebsiella_phage	54.9	1.0e-16
VEC78999.1|1689978_1691259_+|integrase	integrase family protein	integrase	Q8W658	Enterobacteria_phage	61.2	1.2e-154
VEC79001.1|1691439_1692453_-	alcohol dehydrogenase GroES domain-containing protein	NA	NA	NA	NA	NA
VEC79002.1|1692463_1692718_-	starvation-sensing protein rspA	NA	NA	NA	NA	NA
VEC79004.1|1692844_1694128_-	major facilitator family transporter	NA	NA	NA	NA	NA
VEC79006.1|1694239_1694566_-	Protein of uncharacterised function UPF0060	NA	A0A218MNG8	uncultured_virus	53.5	6.0e-21
1694183:1694197	attR	ACTACCATACAAGAA	NA	NA	NA	NA
>prophage 6
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	5409203	2448737	2456581	5409203		Enterobacteria_phage(42.86%)	7	NA	NA
VEC80602.1|2448737_2449742_+	uridine diphosphate galacturonate 4-epimerase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	29.1	3.4e-30
VEC80604.1|2450127_2451294_-	UDP-glucose 6-dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	54.7	8.2e-113
VEC80606.1|2451469_2452024_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	56.4	2.1e-50
VEC80608.1|2452035_2452926_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	34.6	2.5e-29
VEC80610.1|2452958_2453828_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	67.7	1.5e-111
VEC80612.1|2453866_2454931_-	dTDP-D-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.1	2.4e-103
VEC80614.1|2455174_2456581_-	6-phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.4	1.1e-39
>prophage 7
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	5409203	2645128	2654004	5409203		Pseudomonas_phage(33.33%)	8	NA	NA
VEC80995.1|2645128_2647768_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	30.7	4.3e-93
VEC80997.1|2648003_2648234_+	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA	NA
VEC80999.1|2648187_2648691_+	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA	NA
VEC81001.1|2649087_2651229_+	ribonucleoside-diphosphate reductase 1 subunit alpha	NA	I3UMG3	Colwellia_phage	63.4	1.0e-233
VEC81003.1|2651472_2652363_+	ribonucleoside-diphosphate reductase class Ia beta subunit	NA	A9Q1X8	Enterobacteria_phage	80.4	2.4e-128
VEC81005.1|2652359_2652602_+	ribonucleoside-diphosphate reductase class Ia beta subunit	NA	G9IAA3	Pseudomonas_phage	83.8	3.9e-33
VEC81007.1|2652601_2652856_+	Ferredoxin	NA	G9IAA2	Pseudomonas_phage	64.0	4.1e-25
VEC81008.1|2652933_2654004_-	Glycerophosphoryl diester phosphodiesterase, periplasmic	NA	A0A220BYK6	Staphylococcus_phage	50.9	6.0e-09
