assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636115.1_39038_A01	LR134227	Escherichia coli strain NCTC9102 genome assembly, chromosome: 1	1	979720-980114	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|LR134227.1_978429_978570_-,NA	NA|919aa|up_9|LR134227.1_966313_969070_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|LR134227.1_969126_970428_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|LR134227.1_970475_972710_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|LR134227.1_972787_973036_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|LR134227.1_973035_973371_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|LR134227.1_973441_974233_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LR134227.1_974460_976098_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LR134227.1_976185_977484_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|LR134227.1_978429_978570_-	NA	NA|224aa|up_0|LR134227.1_978708_979380_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134227.1_980752_982231_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134227.1_982257_983535_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134227.1_983853_984639_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134227.1_984708_986163_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134227.1_986184_987594_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134227.1_987571_988351_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134227.1_988347_989208_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|LR134227.1_989355_989931_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|LR134227.1_989947_990208_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|LR134227.1_990198_991470_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_900636115.1_39038_A01	LR134227	Escherichia coli strain NCTC9102 genome assembly, chromosome: 1	2	1008003-1008397	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,6,4	6	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	cse2gr11|179aa|up_9|LR134227.1_1002865_1003402_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|118aa|up_8|LR134227.1_1003413_1003767_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas7|221aa|up_7|LR134227.1_1003806_1004469_+	cd09646, Cas7_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|104aa|up_6|LR134227.1_1004479_1004791_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|122aa|up_5|LR134227.1_1004860_1005226_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_4|LR134227.1_1005207_1005858_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_3|LR134227.1_1005854_1006778_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_2|LR134227.1_1006774_1007068_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|92aa|up_1|LR134227.1_1007271_1007547_+	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|126aa|up_0|LR134227.1_1007591_1007969_+	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|346aa|down_0|LR134227.1_1008417_1009455_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134227.1_1009706_1010615_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134227.1_1010616_1012044_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134227.1_1012043_1012649_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134227.1_1012698_1013022_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134227.1_1013215_1013527_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134227.1_1013545_1014256_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134227.1_1014255_1014735_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134227.1_1014731_1015781_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134227.1_1015761_1016523_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636115.1_39038_A01	LR134227	Escherichia coli strain NCTC9102 genome assembly, chromosome: 1	3	1504472-1504589	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|300aa|up_9|LR134227.1_1493955_1494855_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134227.1_1495047_1496238_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134227.1_1496234_1497494_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|LR134227.1_1497483_1499112_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134227.1_1499384_1500743_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134227.1_1500747_1501824_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134227.1_1501865_1502072_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134227.1_1502286_1502937_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134227.1_1502990_1503245_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134227.1_1503244_1504375_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134227.1_1504608_1506894_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1114aa|down_1|LR134227.1_1507637_1510979_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|119aa|down_2|LR134227.1_1510985_1511342_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_3|LR134227.1_1511469_1512192_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_4|LR134227.1_1512338_1514966_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_5|LR134227.1_1515114_1516803_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_6|LR134227.1_1516799_1517423_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_7|LR134227.1_1517566_1521961_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_8|LR134227.1_1521961_1523611_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|249aa|down_9|LR134227.1_1523644_1524391_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_900636115.1_39038_A01	LR134227	Escherichia coli strain NCTC9102 genome assembly, chromosome: 1	4	2131346-2131469	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|79aa|up_9|LR134227.1_2120252_2120489_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134227.1_2120800_2122213_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134227.1_2122769_2122979_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134227.1_2123433_2124060_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134227.1_2124080_2126183_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134227.1_2126195_2126834_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134227.1_2126897_2127566_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134227.1_2127562_2128348_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134227.1_2128399_2129164_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134227.1_2129175_2130780_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134227.1_2131783_2133040_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134227.1_2133080_2134454_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134227.1_2134668_2135310_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134227.1_2135349_2136498_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134227.1_2136788_2138000_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134227.1_2138112_2139045_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134227.1_2139041_2140067_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134227.1_2140620_2141790_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134227.1_2142024_2142606_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134227.1_2142733_2143549_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636115.1_39038_A01	LR134227	Escherichia coli strain NCTC9102 genome assembly, chromosome: 1	6	3057500-3057644	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|72aa|up_3|LR134227.1_3053806_3054022_+,NA	NA|69aa|up_9|LR134227.1_3051340_3051547_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|up_8|LR134227.1_3051622_3051919_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|up_7|LR134227.1_3051924_3052710_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|up_6|LR134227.1_3052706_3053387_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_5|LR134227.1_3053383_3053566_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_4|LR134227.1_3053538_3053730_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|72aa|up_3|LR134227.1_3053806_3054022_+	NA	NA|93aa|up_2|LR134227.1_3054385_3054664_+	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|357aa|up_1|LR134227.1_3054945_3056016_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|LR134227.1_3056150_3057434_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134227.1_3057667_3059929_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134227.1_3060111_3061545_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134227.1_3061620_3062673_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134227.1_3062856_3063810_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134227.1_3063850_3064846_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134227.1_3065000_3065819_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134227.1_3065819_3066878_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134227.1_3066880_3067570_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134227.1_3067569_3068343_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134227.1_3068509_3068659_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900636115.1_39038_A01	LR134227	Escherichia coli strain NCTC9102 genome assembly, chromosome: 1	7	3286841-3286937	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|181aa|up_9|LR134227.1_3279549_3280092_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_8|LR134227.1_3280562_3281429_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_7|LR134227.1_3281430_3281643_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_6|LR134227.1_3281750_3282272_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|204aa|up_5|LR134227.1_3282307_3282919_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|260aa|up_4|LR134227.1_3282912_3283692_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134227.1_3283865_3284360_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134227.1_3284362_3285085_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134227.1_3285202_3285712_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134227.1_3285708_3286776_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134227.1_3286970_3287864_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134227.1_3287860_3288676_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134227.1_3288686_3289946_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134227.1_3289955_3291623_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134227.1_3291939_3292989_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|66aa|down_5|LR134227.1_3293010_3293208_+	TIGR03176, AllC, allantoate amidohydrolase	NA|366aa|down_6|LR134227.1_3293147_3294245_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_7|LR134227.1_3294255_3295041_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_8|LR134227.1_3295268_3296414_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_9|LR134227.1_3296435_3297737_-	PRK11412, PRK11412, uracil/xanthine transporter
