assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636105.1_38936_F01	LR134226	Escherichia coli strain NCTC9088 genome assembly, chromosome: 1	1	1003125-1004007	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,TCCCCGCGCCAGCGGGGATAAACC	29,29,24	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|LR134226.1_1001834_1001975_-,NA	NA|434aa|up_9|LR134226.1_992531_993833_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|LR134226.1_993880_996115_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|LR134226.1_996192_996441_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|LR134226.1_996440_996776_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|LR134226.1_996846_997638_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|LR134226.1_997865_999503_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|LR134226.1_999590_1000889_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|LR134226.1_1000948_1001821_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|LR134226.1_1001834_1001975_-	NA	NA|224aa|up_0|LR134226.1_1002113_1002785_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134226.1_1004645_1006124_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134226.1_1006150_1007428_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134226.1_1007746_1008532_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134226.1_1008601_1010056_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134226.1_1010077_1011487_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134226.1_1011464_1012244_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134226.1_1012240_1013101_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|LR134226.1_1013248_1013824_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|LR134226.1_1013840_1014101_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|LR134226.1_1014091_1015363_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_900636105.1_38936_F01	LR134226	Escherichia coli strain NCTC9088 genome assembly, chromosome: 1	2	1029708-1030346	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|LR134226.1_1017920_1019633_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134226.1_1019706_1020441_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|up_7|LR134226.1_1021052_1023752_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|LR134226.1_1023849_1025412_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|LR134226.1_1025408_1025945_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|LR134226.1_1025956_1027012_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134226.1_1027022_1027769_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134226.1_1027750_1028401_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|LR134226.1_1028397_1029318_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134226.1_1029317_1029611_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134226.1_1030427_1031465_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134226.1_1031716_1032625_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134226.1_1032626_1034054_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134226.1_1034053_1034659_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134226.1_1034708_1035032_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134226.1_1035225_1035537_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134226.1_1035555_1036266_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134226.1_1036265_1036745_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134226.1_1036741_1037791_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134226.1_1037771_1038533_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636105.1_38936_F01	LR134226	Escherichia coli strain NCTC9088 genome assembly, chromosome: 1	3	2126951-2127074	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|471aa|up_9|LR134226.1_2116403_2117816_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|LR134226.1_2118372_2118582_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|LR134226.1_2119037_2119664_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|LR134226.1_2119684_2121787_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|LR134226.1_2121799_2122438_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|LR134226.1_2122501_2123170_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|LR134226.1_2123166_2123952_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|85aa|up_2|LR134226.1_2124003_2124258_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|107aa|up_1|LR134226.1_2124448_2124769_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134226.1_2124780_2126385_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134226.1_2127388_2128645_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134226.1_2128685_2130059_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134226.1_2130273_2130915_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134226.1_2130954_2132103_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134226.1_2132393_2133605_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134226.1_2133717_2134650_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134226.1_2134646_2135672_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134226.1_2136225_2137395_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134226.1_2137540_2138122_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134226.1_2138249_2139065_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636105.1_38936_F01	LR134226	Escherichia coli strain NCTC9088 genome assembly, chromosome: 1	5	3105535-3105674	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGCCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|171aa|up_9|LR134226.1_3092899_3093412_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|303aa|up_8|LR134226.1_3094819_3095728_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|LR134226.1_3095919_3097941_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|LR134226.1_3098519_3099197_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|LR134226.1_3099189_3099945_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|LR134226.1_3099931_3101086_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|LR134226.1_3101082_3102123_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|LR134226.1_3102209_3103499_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|LR134226.1_3103557_3104034_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|LR134226.1_3104185_3105469_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|147aa|down_0|LR134226.1_3105702_3106143_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|605aa|down_1|LR134226.1_3106148_3107963_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_2|LR134226.1_3108145_3109579_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_3|LR134226.1_3109654_3110707_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_4|LR134226.1_3110890_3111844_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_5|LR134226.1_3111884_3112880_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_6|LR134226.1_3113034_3113853_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_7|LR134226.1_3113853_3114912_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_8|LR134226.1_3114914_3115604_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_9|LR134226.1_3115603_3116377_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCA_900636105.1_38936_F01	LR134226	Escherichia coli strain NCTC9088 genome assembly, chromosome: 1	6	3394191-3394287	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|LR134226.1_3385976_3386669_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134226.1_3386888_3387431_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|LR134226.1_3387911_3388778_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134226.1_3388779_3388992_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134226.1_3389099_3389621_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134226.1_3389656_3391042_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134226.1_3391215_3391710_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134226.1_3391712_3392435_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134226.1_3392552_3393062_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134226.1_3393058_3394126_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134226.1_3394320_3395214_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134226.1_3395210_3396026_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134226.1_3396036_3397296_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134226.1_3397305_3398973_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134226.1_3399289_3400339_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134226.1_3400360_3401596_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134226.1_3401606_3402392_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|LR134226.1_3402520_3403666_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134226.1_3403687_3404989_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134226.1_3405045_3406407_-	PRK08044, PRK08044, allantoinase AllB
GCA_900636105.1_38936_F01	LR134226	Escherichia coli strain NCTC9088 genome assembly, chromosome: 1	7	3933624-3933756	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|73aa|down_7|LR134226.1_3941672_3941891_+	NA|126aa|up_9|LR134226.1_3924328_3924706_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|LR134226.1_3924712_3925555_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|197aa|up_7|LR134226.1_3925632_3926223_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|LR134226.1_3926303_3928166_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|LR134226.1_3928158_3928689_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|LR134226.1_3928796_3930128_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|LR134226.1_3930185_3930473_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|LR134226.1_3930469_3931756_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|LR134226.1_3931806_3932748_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|LR134226.1_3932762_3933533_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|LR134226.1_3934006_3935521_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|LR134226.1_3935551_3936694_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|LR134226.1_3936822_3938040_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|LR134226.1_3938113_3939667_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|LR134226.1_3939775_3940561_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|LR134226.1_3940566_3941157_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|LR134226.1_3941242_3941638_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|LR134226.1_3941672_3941891_+	NA	NA|1074aa|down_8|LR134226.1_3941898_3945120_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|LR134226.1_3945137_3946286_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
