assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636085.1_38891_D02	LR134225	Escherichia coli strain NCTC9054 genome assembly, chromosome: 1	1	627193-627310	1	CRISPRCasFinder	no		cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	NA,NA|55aa|down_0|LR134225.1_627383_627548_-	NA|293aa|up_9|LR134225.1_615446_616325_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|49aa|up_8|LR134225.1_616482_616629_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|280aa|up_7|LR134225.1_616633_617473_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|450aa|up_6|LR134225.1_617494_618844_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|LR134225.1_618852_620061_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|LR134225.1_620094_622389_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|LR134225.1_622402_622792_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|LR134225.1_622863_624228_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|LR134225.1_624502_625834_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|LR134225.1_625861_627172_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|LR134225.1_627383_627548_-	NA	NA|234aa|down_1|LR134225.1_627570_628272_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|LR134225.1_628376_629273_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|LR134225.1_629323_629680_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|LR134225.1_629921_630287_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|LR134225.1_630579_631566_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|LR134225.1_631635_632118_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|LR134225.1_632213_632513_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|LR134225.1_632502_632907_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|LR134225.1_632909_633215_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_900636085.1_38891_D02	LR134225	Escherichia coli strain NCTC9054 genome assembly, chromosome: 1	2	1056628-1058059	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,23,23	23	TypeI-E	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	NA|121aa|up_3|LR134225.1_1053524_1053887_-,NA	NA|695aa|up_9|LR134225.1_1046609_1048694_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|LR134225.1_1048771_1049020_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|LR134225.1_1049019_1049355_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|LR134225.1_1049426_1050218_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|LR134225.1_1050445_1052083_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|LR134225.1_1052170_1053469_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|LR134225.1_1053524_1053887_-	NA	NA|302aa|up_2|LR134225.1_1053922_1054828_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|LR134225.1_1054841_1055444_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|LR134225.1_1055616_1056288_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|174aa|down_0|LR134225.1_1058697_1059219_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|down_1|LR134225.1_1059291_1059657_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134225.1_1059972_1061772_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134225.1_1061771_1063484_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134225.1_1063557_1064292_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|down_5|LR134225.1_1064902_1067602_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|538aa|down_6|LR134225.1_1067647_1069261_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|down_7|LR134225.1_1069257_1069797_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_8|LR134225.1_1069808_1070864_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|LR134225.1_1070874_1071621_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCA_900636085.1_38891_D02	LR134225	Escherichia coli strain NCTC9054 genome assembly, chromosome: 1	3	1073560-1074624	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	NA,NA	NA|571aa|up_9|LR134225.1_1061771_1063484_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134225.1_1063557_1064292_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|up_7|LR134225.1_1064902_1067602_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|538aa|up_6|LR134225.1_1067647_1069261_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|LR134225.1_1069257_1069797_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LR134225.1_1069808_1070864_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134225.1_1070874_1071621_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134225.1_1071602_1072253_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134225.1_1072249_1073173_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134225.1_1073169_1073463_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134225.1_1074705_1075743_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134225.1_1075994_1076903_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134225.1_1076904_1078332_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134225.1_1078331_1078937_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134225.1_1078986_1079310_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134225.1_1079503_1079815_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134225.1_1079833_1080544_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134225.1_1080543_1081023_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134225.1_1081019_1082069_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134225.1_1082049_1082811_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636085.1_38891_D02	LR134225	Escherichia coli strain NCTC9054 genome assembly, chromosome: 1	4	3283532-3283676	4	CRISPRCasFinder	no		cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	NA,NA	NA|222aa|up_9|LR134225.1_3271429_3272095_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|LR134225.1_3272816_3273725_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|LR134225.1_3273916_3275938_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|LR134225.1_3276516_3277194_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|LR134225.1_3277186_3277942_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|LR134225.1_3277928_3279083_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|LR134225.1_3279079_3280120_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|LR134225.1_3280206_3281496_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|LR134225.1_3281554_3282031_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|LR134225.1_3282182_3283466_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134225.1_3283699_3285961_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134225.1_3286143_3287577_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134225.1_3287652_3288705_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134225.1_3288888_3289842_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134225.1_3289882_3290878_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|305aa|down_5|LR134225.1_3290936_3291851_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134225.1_3291851_3292910_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|268aa|down_7|LR134225.1_3293167_3293971_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|39aa|down_8|LR134225.1_3294257_3294374_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134225.1_3294540_3294690_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900636085.1_38891_D02	LR134225	Escherichia coli strain NCTC9054 genome assembly, chromosome: 1	5	3568775-3568871	5	CRISPRCasFinder	no		cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	NA,NA	NA|231aa|up_9|LR134225.1_3560560_3561253_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134225.1_3561472_3562015_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|LR134225.1_3562495_3563362_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134225.1_3563363_3563576_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134225.1_3563683_3564205_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134225.1_3564240_3565626_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134225.1_3565799_3566294_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134225.1_3566296_3567019_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134225.1_3567136_3567646_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134225.1_3567642_3568710_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134225.1_3568904_3569798_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134225.1_3569794_3570610_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134225.1_3570620_3571880_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134225.1_3571889_3573557_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134225.1_3573873_3574923_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134225.1_3574944_3576180_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134225.1_3576190_3576976_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|232aa|down_7|LR134225.1_3577104_3577800_-	PRK09932, PRK09932, glycerate 3-kinase	NA|168aa|down_8|LR134225.1_3577745_3578249_-	PRK09932, PRK09932, glycerate 3-kinase	NA|184aa|down_9|LR134225.1_3578270_3578822_-	PRK11412, PRK11412, uracil/xanthine transporter
GCA_900636085.1_38891_D02	LR134225	Escherichia coli strain NCTC9054 genome assembly, chromosome: 1	6	4327850-4327999	6	CRISPRCasFinder	no	cas3	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT	NA|171aa|up_8|LR134225.1_4317979_4318492_-,NA|78aa|up_7|LR134225.1_4319034_4319268_-,NA|66aa|down_3|LR134225.1_4332907_4333105_+,NA|504aa|down_7|LR134225.1_4335225_4336737_-	NA|424aa|up_9|LR134225.1_4316655_4317927_-	COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]	NA|171aa|up_8|LR134225.1_4317979_4318492_-	NA	NA|78aa|up_7|LR134225.1_4319034_4319268_-	NA	NA|415aa|up_6|LR134225.1_4319369_4320614_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_5|LR134225.1_4321080_4322100_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|218aa|up_4|LR134225.1_4322395_4323049_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|216aa|up_3|LR134225.1_4323086_4323734_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|LR134225.1_4323852_4324935_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|360aa|up_1|LR134225.1_4324934_4326014_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|LR134225.1_4326301_4327813_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|LR134225.1_4328166_4328610_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|LR134225.1_4328609_4331465_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|LR134225.1_4331518_4332715_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|66aa|down_3|LR134225.1_4332907_4333105_+	NA	NA|109aa|down_4|LR134225.1_4333085_4333412_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_5|LR134225.1_4333457_4333874_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|338aa|down_6|LR134225.1_4334035_4335049_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|504aa|down_7|LR134225.1_4335225_4336737_-	NA	NA|151aa|down_8|LR134225.1_4336859_4337312_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_9|LR134225.1_4337456_4338050_-	COG1309, AcrR, Transcriptional regulator [Transcription]
