assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636075.1_38670_C01	LR134222	Escherichia coli strain NCTC11129 genome assembly, chromosome: 1	1	615819-615936	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|180aa|up_9|LR134222.1_602745_603285_-,NA|55aa|down_0|LR134222.1_616009_616174_-	NA|180aa|up_9|LR134222.1_602745_603285_-	NA	NA|313aa|up_8|LR134222.1_604073_605012_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|LR134222.1_605110_606100_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|LR134222.1_606121_607453_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|LR134222.1_607478_608687_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|LR134222.1_608720_611015_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|LR134222.1_611028_611418_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|LR134222.1_611489_612854_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|LR134222.1_613128_614460_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|LR134222.1_614487_615798_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|LR134222.1_616009_616174_-	NA	NA|234aa|down_1|LR134222.1_616196_616898_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|LR134222.1_617002_617899_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|LR134222.1_617949_618306_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|LR134222.1_618547_618913_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|LR134222.1_619205_620192_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|LR134222.1_620261_620744_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|LR134222.1_620839_621139_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|LR134222.1_621128_621533_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|LR134222.1_621535_621841_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_900636075.1_38670_C01	LR134222	Escherichia coli strain NCTC11129 genome assembly, chromosome: 1	2	1006019-1007509	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	24,24,24	24	TypeI-E	cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|121aa|up_3|LR134222.1_1002915_1003278_-,NA|60aa|down_5|LR134222.1_1013006_1013186_+	NA|745aa|up_9|LR134222.1_995851_998086_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|LR134222.1_998163_998412_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|LR134222.1_998411_998747_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|LR134222.1_998817_999609_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|LR134222.1_999836_1001474_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|LR134222.1_1001561_1002860_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|LR134222.1_1002915_1003278_-	NA	NA|302aa|up_2|LR134222.1_1003313_1004219_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|LR134222.1_1004232_1004835_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|LR134222.1_1005007_1005679_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|174aa|down_0|LR134222.1_1008147_1008669_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|down_1|LR134222.1_1008741_1009107_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134222.1_1009422_1011222_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|151aa|down_3|LR134222.1_1011221_1011674_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|436aa|down_4|LR134222.1_1011625_1012933_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|60aa|down_5|LR134222.1_1013006_1013186_+	NA	NA|186aa|down_6|LR134222.1_1013182_1013740_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3HD|131aa|down_7|LR134222.1_1014350_1014743_+	pfam18019, HD_6, HD domain	cas3|747aa|down_8|LR134222.1_1014808_1017049_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_9|LR134222.1_1017146_1018709_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_900636075.1_38670_C01	LR134222	Escherichia coli strain NCTC11129 genome assembly, chromosome: 1	3	1023007-1023707	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,10	11	TypeI-E	cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|186aa|up_9|LR134222.1_1013182_1013740_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3HD|131aa|up_8|LR134222.1_1014350_1014743_+	pfam18019, HD_6, HD domain	cas3|747aa|up_7|LR134222.1_1014808_1017049_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|LR134222.1_1017146_1018709_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|LR134222.1_1018705_1019242_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LR134222.1_1019256_1020312_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134222.1_1020322_1021069_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|169aa|up_2|LR134222.1_1021050_1021557_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134222.1_1021696_1022620_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134222.1_1022616_1022910_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134222.1_1023789_1024827_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134222.1_1025078_1025987_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134222.1_1025988_1027416_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134222.1_1027415_1028021_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134222.1_1028070_1028394_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134222.1_1028587_1028899_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134222.1_1028917_1029628_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134222.1_1029627_1030107_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134222.1_1030103_1031153_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134222.1_1031133_1031895_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636075.1_38670_C01	LR134222	Escherichia coli strain NCTC11129 genome assembly, chromosome: 1	4	2176720-2176843	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|79aa|up_9|LR134222.1_2165626_2165863_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134222.1_2166173_2167586_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134222.1_2168142_2168352_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134222.1_2168807_2169434_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134222.1_2169454_2171557_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134222.1_2171569_2172208_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134222.1_2172271_2172940_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134222.1_2172936_2173722_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134222.1_2173773_2174538_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134222.1_2174549_2176154_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134222.1_2177157_2178414_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134222.1_2178454_2179828_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134222.1_2180042_2180684_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134222.1_2180723_2181872_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134222.1_2182162_2183374_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134222.1_2183486_2184419_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134222.1_2184415_2185441_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134222.1_2185994_2187164_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134222.1_2187309_2187891_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134222.1_2188018_2188834_-	pfam00877, NLPC_P60, NlpC/P60 family
