The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	92584	129152	4972355	protease,transposase	Enterobacteria_phage(60.0%)	30	NA	NA
VEC68283.1|92584_92956_+|transposase	transposase	transposase	Q6H9S5	Enterobacteria_phage	97.9	3.8e-48
VEC68285.1|94284_94659_+|transposase	ISSd1, transposase OrfB	transposase	A0A0P0I4A4	Acinetobacter_phage	50.0	1.1e-29
VEC68287.1|94925_95570_+	putative SpnT protein	NA	NA	NA	NA	NA
VEC68289.1|95635_95959_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC68291.1|95989_96187_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VEC68293.1|96579_96786_+	polyketide synthase pksM (fragment)	NA	NA	NA	NA	NA
VEC68295.1|97981_98290_-|transposase	transposase (fragment), IS630 family	transposase	NA	NA	NA	NA
VEC68297.1|98685_99162_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68300.1|99164_100643_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68302.1|100652_101159_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68304.1|101168_101591_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68306.1|101583_103386_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68308.1|103376_104309_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68310.1|104321_105626_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68312.1|105669_106305_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68314.1|106315_106783_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68316.1|107096_108173_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68318.1|108180_108732_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68320.1|108750_110163_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68322.1|110286_110505_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68324.1|110501_111092_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68326.1|111097_114502_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68328.1|114505_117055_+	putative type VI secretion protein	NA	A0A1C3S747	Escherichia_phage	33.9	2.7e-92
VEC68330.1|119019_119169_+	putative type VI secretion protein	NA	NA	NA	NA	NA
VEC68332.1|119152_119272_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC68334.1|119429_119639_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC68336.1|120225_120792_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC68338.1|120997_121165_+|transposase	transposase	transposase	Q6H9S4	Enterobacteria_phage	100.0	8.3e-11
VEC68340.1|121271_122426_+	ImpA-related N-terminal family protein	NA	NA	NA	NA	NA
VEC68342.1|125033_129152_+|protease	serine protease (autotransporter)	protease	Q9LA54	Enterobacteria_phage	45.8	0.0e+00
>prophage 2
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	1234900	1240196	4972355		Bacillus_virus(33.33%)	6	NA	NA
VEC71432.1|1234900_1235695_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	43.3	5.4e-15
VEC71434.1|1235663_1236104_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.0	8.1e-05
VEC71436.1|1236460_1237420_-	ribonucleoside-diphosphate reductase 2 beta chain	NA	R4TBI6	Mycobacterium_phage	71.5	1.3e-132
VEC71438.1|1237429_1239574_-	ribonucleoside-diphosphate reductase 2 alpha chain	NA	A8E2R1	Enterococcus_phage	48.5	2.9e-196
VEC71440.1|1239546_1239954_-	ribonucleotide reductase stimulatory protein	NA	A0A142F1R4	Bacillus_phage	44.7	2.7e-18
VEC71442.1|1239950_1240196_-	glutaredoxin-like protein	NA	Q5K5J3	Oenococcus_phage	35.3	2.4e-06
>prophage 3
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	1397955	1402907	4972355		Escherichia_phage(66.67%)	7	NA	NA
VEC71705.1|1397955_1398390_+	inosine 5'-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	42.3	3.4e-19
VEC71707.1|1398410_1399421_+	inosine 5'-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	37.8	4.3e-57
VEC71709.1|1399489_1401067_+	bifunctional GMP synthase/glutamine amidotransferase protein	NA	NA	NA	NA	NA
VEC71711.1|1401161_1401701_-	Uncharacterised protein	NA	G9L6F0	Escherichia_phage	96.1	1.9e-40
VEC71713.1|1401716_1402232_-	putative lipoprotein	NA	G9L6F1	Escherichia_phage	99.4	2.9e-62
VEC71715.1|1402545_1402719_-	protein	NA	G9L6F2	Escherichia_phage	100.0	6.8e-24
VEC71717.1|1402754_1402907_+	Uncharacterised protein	NA	G9L6F3	Escherichia_phage	96.0	1.7e-18
>prophage 4
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	1542279	1555201	4972355		Escherichia_phage(83.33%)	6	NA	NA
VEC71978.1|1542279_1542849_-	type 1 fimbriae regulatory protein	NA	A0A2L1IV36	Escherichia_phage	52.2	7.0e-49
VEC71980.1|1543597_1544227_+	type 1 fimbriae regulatory protein	NA	A0A2L1IV36	Escherichia_phage	99.0	4.1e-119
VEC71982.1|1544544_1545165_+	LuxR family transcriptional regulator	NA	A0A2L1IV08	Escherichia_phage	99.5	3.5e-118
VEC71984.1|1545189_1553103_+	outer membrane autotransporter domain protein	NA	A0A2L1IV38	Escherichia_phage	95.5	0.0e+00
VEC71986.1|1553162_1553681_+	putative outer membrane protein	NA	A0A2L1IV11	Escherichia_phage	96.5	1.1e-82
VEC71988.1|1554268_1555201_-	transporter protein	NA	E7DYY8	Enterobacteria_phage	99.7	2.7e-167
>prophage 5
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	1797590	1807032	4972355		Enterobacteria_phage(87.5%)	11	NA	NA
VEC72419.1|1797590_1798517_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	1.1e-22
VEC72421.1|1798521_1799253_+	ABC transporter permease	NA	NA	NA	NA	NA
VEC72423.1|1799233_1799341_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEC72424.1|1799400_1800132_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.0	2.8e-111
VEC72425.1|1800353_1802039_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.5	7.3e-304
VEC72426.1|1802035_1802755_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VEC72427.1|1802801_1803272_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VEC72428.1|1803313_1803775_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
VEC72429.1|1803899_1805900_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
VEC72430.1|1805896_1806088_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	96.8	1.1e-27
VEC72431.1|1806081_1807032_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.9	2.0e-125
>prophage 6
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	1948652	1959075	4972355	integrase,transposase	Enterobacteria_phage(50.0%)	13	1941293:1941306	1964595:1964608
1941293:1941306	attL	AAACGGCATCAGCG	NA	NA	NA	NA
VEC72558.1|1948652_1949165_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VEC72559.1|1949383_1950190_+|integrase	putative integrase	integrase	NA	NA	NA	NA
VEC72560.1|1950352_1951894_+|transposase	transposase for ISEc12	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
VEC72561.1|1951908_1952655_+|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
VEC72562.1|1952715_1952970_-	putative GTP-binding protein	NA	NA	NA	NA	NA
VEC72563.1|1953079_1953223_-	putative GTPase	NA	NA	NA	NA	NA
VEC72564.1|1953305_1954457_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC72565.1|1956839_1957010_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC72566.1|1957081_1957300_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC72567.1|1957239_1957440_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC72568.1|1957578_1957737_-	InterPro motifs Prophage CP4-57 regulatory protein (AlpA)	NA	NA	NA	NA	NA
VEC72569.1|1958295_1958505_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	65.1	4.9e-08
VEC72570.1|1958724_1959075_+|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	63.8	6.2e-40
1964595:1964608	attR	AAACGGCATCAGCG	NA	NA	NA	NA
>prophage 7
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	2395245	2465061	4972355	tail,protease,capsid,coat,integrase,transposase,head,terminase,lysis,portal	Enterobacteria_phage(41.18%)	80	2421380:2421395	2435130:2435145
VEC72985.1|2395245_2396067_-|protease	putative protease	protease	NA	NA	NA	NA
VEC72986.1|2396342_2396651_-	acid shock protein	NA	NA	NA	NA	NA
VEC72987.1|2397074_2397809_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEC72988.1|2397805_2398327_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEC72989.1|2398433_2399327_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEC72990.1|2399461_2400682_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
VEC72991.1|2400806_2401502_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
VEC72992.1|2401454_2402711_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
VEC72993.1|2402904_2403519_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	35.8	7.3e-28
VEC72994.1|2403561_2404416_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
VEC72995.1|2404417_2405035_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
VEC72996.1|2405045_2407442_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.5	1.1e-207
VEC72997.1|2407529_2409956_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	49.2	1.3e-213
VEC72998.1|2410154_2410460_-	protein	NA	NA	NA	NA	NA
VEC72999.1|2410531_2411278_+	lipoprotein	NA	NA	NA	NA	NA
VEC73000.1|2411280_2411841_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VEC73001.1|2411875_2412217_-	protein	NA	NA	NA	NA	NA
VEC73002.1|2412351_2412678_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	54.5	2.2e-23
VEC73003.1|2412883_2414098_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
VEC73004.1|2414109_2415129_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.2	5.7e-17
VEC73005.1|2415316_2416597_-|integrase	defective integrase; Qin prophage	integrase	B6DZ48	Enterobacteria_phage	62.1	3.3e-155
VEC73006.1|2416631_2416868_-	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VEC73007.1|2416955_2418677_-	Exonuclease RNase T and DNA polymerase III	NA	A0A192Y6E0	Salmonella_phage	56.7	5.9e-59
VEC73008.1|2418645_2419191_-	Qin prophage; protein	NA	NA	NA	NA	NA
VEC73009.1|2419258_2419429_-	ExoO exonuclease VIII, ds DNA exonuclease encoded by prophage CP-933O	NA	NA	NA	NA	NA
VEC73010.1|2419521_2419713_-	putative prophage protein	NA	NA	NA	NA	NA
VEC73011.1|2419709_2419898_-	division inhibition protein	NA	NA	NA	NA	NA
VEC73012.1|2420297_2420462_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC73013.1|2420465_2420684_-	putative prophage protein	NA	NA	NA	NA	NA
VEC73014.1|2420713_2420842_-	putative prophage protein	NA	NA	NA	NA	NA
VEC73015.1|2420843_2420999_-	putative prophage protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
VEC73016.1|2421165_2421573_-	repressor protein of division inhibition gene	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
2421380:2421395	attL	CATGTTGGTGAGCATT	NA	NA	NA	NA
VEC73017.1|2421656_2421887_+	repressor protein of division inhibition gene	NA	NA	NA	NA	NA
VEC73018.1|2421870_2422392_+	YdfX	NA	NA	NA	NA	NA
VEC73019.1|2422372_2423326_+	ybl78	NA	U5P0A0	Shigella_phage	57.4	4.9e-55
VEC73020.1|2423366_2423789_+	putative prophage protein	NA	A0A0U2QQN3	Escherichia_phage	92.0	4.4e-64
VEC73021.1|2423785_2424142_+	putative methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
VEC73022.1|2425294_2425474_+	membrane protein	NA	NA	NA	NA	NA
VEC73023.1|2425808_2427122_+|integrase,transposase	putative integrase/transposase	integrase,transposase	NA	NA	NA	NA
VEC73024.1|2427558_2427891_-	Qin prophage protein	NA	NA	NA	NA	NA
VEC73025.1|2428423_2428663_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
VEC73026.1|2428662_2428950_+	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
VEC73027.1|2429021_2429177_+	putative host cell-killing modulation protein	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
VEC73028.1|2429393_2429645_+	putative prophage protein	NA	NA	NA	NA	NA
VEC73029.1|2429991_2431041_+	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	57.0	2.8e-112
VEC73030.1|2431054_2431807_+	lambdoid prophage Qin antitermination protein Q-like protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
VEC73031.1|2432228_2432441_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
VEC73032.1|2433719_2433926_+|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.1	4.5e-30
VEC73033.1|2433930_2434242_+	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
VEC73034.1|2434238_2434763_+	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	94.3	5.4e-96
VEC73035.1|2434782_2435265_+	Qin prophage protein	NA	A0A291LBG9	Klebsiella_phage	29.9	2.8e-06
2435130:2435145	attR	AATGCTCACCAACATG	NA	NA	NA	NA
VEC73036.1|2436513_2436687_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
VEC73037.1|2436838_2437249_-	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
VEC73038.1|2437928_2438474_+	prophage qsr' DNA packaging protein NU1-like protein	NA	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
VEC73039.1|2438448_2440374_+|terminase	phage terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	99.2	0.0e+00
VEC73040.1|2440370_2440577_+|head,tail	head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
VEC73041.1|2440573_2442175_+|capsid,portal	phage portal protein (minor capsid protein)	capsid,portal	A0A0K2FJC0	Enterobacteria_phage	99.2	3.8e-310
VEC73042.1|2442155_2443475_+|capsid	minor capsid protein C from bacteriophage origin	capsid	A0A2I6TC87	Escherichia_phage	98.6	3.1e-233
VEC73043.1|2443484_2443817_+	Head decoration protein from bacteriophage origin	NA	A0A2R9YJN3	Escherichia_phage	98.2	1.4e-54
VEC73044.1|2443872_2444898_+|head,coat	phage major head protein (major coat protein)	head,coat	C6ZCY2	Enterobacteria_phage	97.7	1.4e-188
VEC73045.1|2444939_2445335_+	DNA packaging protein from bacteriophage origin	NA	A0A2R9YJP4	Escherichia_phage	95.5	5.7e-58
VEC73046.1|2445346_2445700_+|capsid	minor capsid protein	capsid	A0A0K2FJB7	Enterobacteria_phage	99.1	4.4e-62
VEC73047.1|2445711_2446290_+|tail	Minor tail protein Z (GpZ)	tail	A0A2R9YJK4	Escherichia_phage	100.0	2.7e-80
VEC73048.1|2446286_2446682_+|tail	phage minor tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
VEC73049.1|2446689_2447430_+|tail	Major tail protein V	tail	A0A0K2FJ05	Enterobacteria_phage	100.0	7.8e-133
VEC73050.1|2447445_2447868_+|tail	phage minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	97.9	1.8e-70
VEC73051.1|2447849_2448284_+|tail	minor tail protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
VEC73052.1|2448276_2450856_+|tail	putative phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	94.3	0.0e+00
VEC73053.1|2450852_2451182_+|tail	Minor tail protein M	tail	A0A0K2FIE9	Enterobacteria_phage	98.2	8.1e-58
VEC73054.1|2451181_2451880_+|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	100.0	2.3e-134
VEC73055.1|2451885_2452629_+|tail	putative tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	97.2	5.0e-148
VEC73056.1|2452625_2453198_+|tail	phage tail assembly protein	tail	A0A0K2FJB0	Escherichia_phage	98.4	7.4e-83
VEC73057.1|2453332_2456737_+	Host specificity protein J of prophage	NA	A0A291AWT4	Escherichia_phage	90.2	0.0e+00
VEC73058.1|2456803_2457403_+	membrane protein, Lom/All family	NA	A0A291AWV3	Escherichia_phage	96.0	4.5e-107
VEC73059.1|2457467_2459492_+|tail	Putative phage tail fiber protein	tail	A0A0E3M0V5	Enterobacteria_phage	72.3	3.2e-181
VEC73060.1|2459488_2459767_+	putative prophage protein	NA	A0A0E3JSQ1	Enterobacteria_phage	55.4	2.9e-24
VEC73061.1|2460301_2460892_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	7.3e-25
VEC73062.1|2461208_2461442_-	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
VEC73063.1|2462227_2463511_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
VEC73064.1|2463600_2465061_+	putative sugar dehydrogenase	NA	G8DCZ3	Micromonas_pusilla_virus	29.7	6.6e-43
>prophage 8
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	2726933	2793183	4972355	tail,protease,capsid,integrase,head,terminase,lysis	Enterobacteria_phage(38.3%)	69	2772667:2772681	2797369:2797383
VEC73309.1|2726933_2727983_-|protease	protease	protease	A0A2H4UUF9	Bodo_saltans_virus	32.0	3.5e-22
VEC73310.1|2728202_2728961_+	putative short chain dehydrogenase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	9.7e-06
VEC73311.1|2728957_2729548_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
VEC73312.1|2729587_2730463_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
VEC73313.1|2730818_2732570_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEC73314.1|2732597_2733218_-	putative RNA binding protein	NA	NA	NA	NA	NA
VEC73315.1|2733214_2734096_-	putative phosphoesterase	NA	NA	NA	NA	NA
VEC73316.1|2734369_2735932_+	anthranilate synthase component I	NA	NA	NA	NA	NA
VEC73317.1|2735931_2737527_+	anthranilate synthase component II [includes: glutamine amidotransferase; anthranilate phosphoribosyltransferase]	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	2.2e-52
VEC73318.1|2737530_2738889_+	tryptophan biosynthesis protein [includes: indole-3-glycero phosphate synthase; N-(5'-phospho ribosyl)anthranilate isomerase]	NA	A0A0P0IR83	Acinetobacter_phage	41.2	3.0e-37
VEC73319.1|2738900_2740094_+	tryptophan synthase	NA	NA	NA	NA	NA
VEC73320.1|2740093_2740900_+	tryptophan synthase alpha chain	NA	NA	NA	NA	NA
VEC73321.1|2741275_2741455_+	protein	NA	NA	NA	NA	NA
VEC73322.1|2741540_2742041_+	YciF protein	NA	NA	NA	NA	NA
VEC73323.1|2742086_2742593_+	protein YciE	NA	NA	NA	NA	NA
VEC73324.1|2743081_2743252_-|tail	tail component	tail	A0A0U2RK60	Escherichia_phage	62.5	9.4e-10
VEC73325.1|2743704_2744361_+	methylase	NA	NA	NA	NA	NA
VEC73326.1|2744999_2748014_-|tail	Side tail fiber protein from bacteriophage origin	tail	A0A0K2FIZ6	Escherichia_phage	55.1	2.9e-53
VEC73327.1|2748165_2748765_-	putative prophage-encoded outer membrane protein	NA	Q9EV15	Enterobacteria_phage	96.5	2.0e-107
VEC73328.1|2748832_2749267_-	fibronectin type III domain-containing protein	NA	Q9EYE7	Enterobacteria_phage	99.3	5.4e-78
VEC73329.1|2749247_2752313_-	Host specificity protein J of prophage	NA	A5LH43	Enterobacteria_phage	96.9	0.0e+00
VEC73330.1|2752379_2752634_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC73331.1|2752789_2753332_-|tail	tail component of prophage CP-933K	tail	A0A291AWV5	Escherichia_phage	82.4	1.9e-75
VEC73332.1|2753328_2753928_-|tail	putative tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	94.5	4.8e-117
VEC73333.1|2754076_2754775_-|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	2.1e-132
VEC73334.1|2754774_2755104_-|tail	Minor tail protein M	tail	A0A0K2FIE9	Enterobacteria_phage	98.2	8.1e-58
VEC73335.1|2755103_2757674_-|tail	Minor tail protein precursor H	tail	A0A2R9YJM8	Escherichia_phage	85.4	0.0e+00
VEC73336.1|2757654_2758068_-|tail	phage minor tail protein	tail	S5MDP5	Escherichia_phage	82.2	1.6e-42
VEC73337.1|2758094_2758526_-|tail	tail component of prophage CP-933O	tail	A0A0K2FIQ8	Enterobacteria_phage	68.1	1.8e-41
VEC73338.1|2758539_2759292_-|tail	phage major tail protein	tail	Q687F6	Enterobacteria_phage	97.6	1.8e-132
VEC73339.1|2759299_2760268_-|tail	phage minor tail protein	tail	A0A2R9YJI2	Escherichia_phage	82.4	4.8e-58
VEC73340.1|2760283_2760637_-|capsid	Tail attachment protein (Minor capsid protein FII)	capsid	A0A0K2FJB7	Enterobacteria_phage	70.1	1.9e-41
VEC73341.1|2760629_2761013_-	phage protein	NA	NA	NA	NA	NA
VEC73342.1|2761064_2762108_-|head	phage major head protein	head	C6ZCY2	Enterobacteria_phage	62.6	7.6e-110
VEC73343.1|2762148_2762496_-|head	phage head decoration protein	head	A0A2R9YJN3	Escherichia_phage	58.1	8.9e-23
VEC73344.1|2762555_2764037_-|head,tail	phage head-tail preconnector protein [contains: scaffold protein]	head,tail	A0A2I6TC87	Escherichia_phage	53.3	4.6e-100
VEC73345.1|2764026_2765619_-|capsid	capsid protein of prophage	capsid	K7P6U7	Enterobacteria_phage	60.9	1.4e-184
VEC73346.1|2765615_2765822_-|head	phage head-stabilizing protein	head	K7PM10	Enterobacteria_phage	56.9	7.9e-11
VEC73347.1|2765805_2766231_-|terminase	phage terminase large subunit (GpA)	terminase	A0A2I6TC92	Escherichia_phage	57.2	4.3e-35
VEC73348.1|2766190_2767735_-|terminase	DNA packaging protein of prophage; terminase large subunit	terminase	O64317	Escherichia_phage	68.6	2.9e-206
VEC73349.1|2767706_2768255_-	Terminase small subunit (gp1)	NA	A0A0U2S671	Escherichia_phage	84.2	1.0e-57
VEC73350.1|2768933_2769344_+	phage protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
VEC73351.1|2769713_2770115_-	murein endopeptidase; DLP12 prophage	NA	A0A0K2FJD0	Enterobacteria_phage	83.8	7.3e-45
VEC73352.1|2770116_2770254_-	phage protein	NA	Q687G2	Enterobacteria_phage	97.8	1.3e-17
VEC73353.1|2770413_2770947_-	membrane-associated lysozyme; Qin prophage	NA	Q08J98	Stx2-converting_phage	96.6	2.4e-99
VEC73354.1|2771222_2771318_-	bacteriophage protein	NA	K7PGU6	Enterobacteria_phage	100.0	1.1e-07
VEC73355.1|2771322_2771538_-|lysis	putative lysis protein S	lysis	G9L6J5	Escherichia_phage	100.0	9.0e-34
VEC73356.1|2771688_2773542_-	phage protein	NA	Q08JA2	Stx2-converting_phage	90.3	0.0e+00
2772667:2772681	attL	ACCGTGTTCTTGTTT	NA	NA	NA	NA
VEC73357.1|2774816_2775866_-	DNA methylase	NA	A0A0N7KZF8	Stx2-converting_phage	95.7	5.2e-199
VEC73358.1|2776016_2776214_-	lipoprotein	NA	Q9MC00	Enterobacteria_phage	100.0	2.1e-29
VEC73359.1|2776440_2777262_-	phage antitermination protein	NA	K7P7B9	Enterobacteria_phage	60.8	1.7e-80
VEC73360.1|2777258_2777639_-	Holliday juction resolvase	NA	V5URS4	Shigella_phage	63.6	1.5e-34
VEC73361.1|2777639_2778695_-	phage protein	NA	A0A291AWV9	Escherichia_phage	48.1	6.8e-90
VEC73362.1|2779081_2780227_-	DNA-bining transcriptional regulator	NA	A0A0A7RTT7	Clostridium_phage	30.1	2.8e-41
VEC73363.1|2780223_2780838_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC73364.1|2781437_2784236_-	Predicted metal-binding protein related to the C-terminal domain of SecA	NA	NA	NA	NA	NA
VEC73365.1|2784458_2784875_-	phage protein	NA	A0A0U2QQN3	Escherichia_phage	69.8	5.3e-46
VEC73366.1|2784915_2785977_-	replication protein	NA	A0A088CD36	Shigella_phage	65.8	2.7e-62
VEC73367.1|2786048_2786474_-	phage regulatory protein	NA	NA	NA	NA	NA
VEC73368.1|2786457_2786700_-	antirepressor protein	NA	H9C161	Pectobacterium_phage	55.8	4.8e-07
VEC73369.1|2787091_2787430_+	putative prophage repressor	NA	H9C160	Pectobacterium_phage	30.7	2.5e-06
VEC73370.1|2787641_2787878_+	putative prophage protein	NA	M4QQ57	Salicola_phage	53.2	4.6e-07
VEC73371.1|2787879_2788008_+	putative prophage protein	NA	NA	NA	NA	NA
VEC73372.1|2788037_2788256_+	putative prophage protein	NA	NA	NA	NA	NA
VEC73373.1|2788259_2788424_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC73374.1|2788823_2789012_+	division inhibition protein	NA	NA	NA	NA	NA
VEC73375.1|2789008_2789200_+	putative prophage protein	NA	NA	NA	NA	NA
VEC73376.1|2789293_2791762_+	putative exonuclease from phage origin	NA	A0A192Y6E0	Salmonella_phage	58.2	6.5e-59
VEC73377.1|2792052_2793183_+|integrase	integrase for prophage CP-933O	integrase	O21940	Phage_21	51.4	5.7e-103
2797369:2797383	attR	ACCGTGTTCTTGTTT	NA	NA	NA	NA
>prophage 9
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	3033844	3039259	4972355	protease,transposase	Escherichia_phage(33.33%)	7	NA	NA
VEC73622.1|3033844_3034750_-|protease	secreted autotransporter serine protease	protease	NA	NA	NA	NA
VEC73623.1|3035385_3035607_+|transposase	transposase, IS903.B	transposase	Q9MCT5	Escherichia_phage	68.9	3.6e-09
VEC73624.1|3035627_3036425_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VEC73625.1|3036837_3037137_+|transposase	transposase	transposase	NA	NA	NA	NA
VEC73626.1|3037133_3037865_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.0	1.1e-35
VEC73627.1|3037983_3038187_-|transposase	truncated transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	66.0	1.6e-11
VEC73628.1|3038287_3039259_-|transposase	putative transposase	transposase	NA	NA	NA	NA
>prophage 10
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	3044885	3096608	4972355	protease,transposase	Enterobacteria_phage(25.0%)	51	NA	NA
VEC73635.1|3044885_3045632_-|transposase	transposase-like protein	transposase	A0A0P0ZBS5	Stx2-converting_phage	65.8	4.8e-82
VEC73636.1|3045657_3046206_+|transposase	putative transposase	transposase	A0A077SLK2	Escherichia_phage	85.6	1.6e-82
VEC73637.1|3046258_3046507_+|transposase	transposase	transposase	A0A077SLK2	Escherichia_phage	82.9	2.1e-34
VEC73638.1|3046701_3047049_-	dispersin	NA	NA	NA	NA	NA
VEC73639.1|3047545_3048061_-	major fimbrial subunit of aggregative adherence fimbria II	NA	NA	NA	NA	NA
VEC73640.1|3048171_3048606_-	Protein Agg3B, putative invasin	NA	NA	NA	NA	NA
VEC73641.1|3048621_3051216_-	aggregative adherence fimbria II usher protein	NA	NA	NA	NA	NA
VEC73642.1|3051246_3052014_-	Chaperone protein Agg3D	NA	NA	NA	NA	NA
VEC73643.1|3052423_3052639_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC73644.1|3052668_3053358_+	IroC	NA	F2Y165	Organic_Lake_phycodnavirus	27.9	3.6e-07
VEC73645.1|3053318_3053735_+	IroC	NA	NA	NA	NA	NA
VEC73646.1|3053838_3055068_+	esterase	NA	NA	NA	NA	NA
VEC73647.1|3055152_3056109_+	IroE protein	NA	NA	NA	NA	NA
VEC73648.1|3056153_3056945_-	outer membrane receptor FepA	NA	NA	NA	NA	NA
VEC73649.1|3057168_3057453_+|transposase	transposase subunit	transposase	A0A2I6AZV8	Macacine_betaherpesvirus	97.9	8.3e-43
VEC73650.1|3057449_3057950_+	IS150 conserved protein InsB	NA	A0A1B1P773	Bacillus_phage	49.7	2.9e-38
VEC73651.1|3057953_3059567_-|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.4	8.3e-172
VEC73652.1|3059597_3059948_-|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	63.8	6.2e-40
VEC73653.1|3060017_3060380_-|transposase	transposase	transposase	Q6H9S5	Enterobacteria_phage	60.3	9.6e-20
VEC73654.1|3060850_3061504_-	sodium/proline symporter (proline permease)	NA	NA	NA	NA	NA
VEC73655.1|3061452_3062358_-	sodium/proline symporter (proline permease)	NA	NA	NA	NA	NA
VEC73656.1|3062780_3066743_+	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
VEC73657.1|3066782_3067421_-	transcriptional regulator YcdC	NA	NA	NA	NA	NA
VEC73658.1|3067708_3068800_+	monooxygenase ycdM	NA	NA	NA	NA	NA
VEC73659.1|3068796_3069492_+	isochorismatase family protein ycdL	NA	NA	NA	NA	NA
VEC73660.1|3069503_3069890_+	pyrimidine utilization protein C	NA	NA	NA	NA	NA
VEC73661.1|3069897_3070710_+	alternative pyrimidine degradation pathway protein	NA	NA	NA	NA	NA
VEC73662.1|3070706_3071297_+	putative NADH dehydrogenase/NAD(P)H nitroreductase (pyrimidine utilization protein E)	NA	NA	NA	NA	NA
VEC73663.1|3071307_3071802_+	oxidoreductase, flavin:NADH component	NA	Q9KX93	Enterobacteria_phage	97.9	5.0e-51
VEC73664.1|3071822_3073151_+	pyrimidine transporter	NA	Q9KX94	Enterobacteria_phage	98.9	4.8e-234
VEC73665.1|3073233_3073407_-	Stress-induced protein, KGG, repeat	NA	Q9KX95	Enterobacteria_phage	96.3	4.9e-06
VEC73666.1|3073779_3074376_+	putative flavoprotein	NA	NA	NA	NA	NA
VEC73667.1|3074396_3074624_+	putative cytoplasmic protein YccJ	NA	NA	NA	NA	NA
VEC73668.1|3074661_3075903_-	glucose-1-phosphatase	NA	NA	NA	NA	NA
VEC73669.1|3076195_3077452_-	yccE	NA	NA	NA	NA	NA
VEC73670.1|3077711_3078632_+	curved DNA-binding protein	NA	A0A1V0SIM1	Klosneuvirus	43.0	2.5e-11
VEC73671.1|3078631_3078937_+	chaperone-modulator protein	NA	NA	NA	NA	NA
VEC73672.1|3079029_3079629_-	chaperone protein TorD	NA	NA	NA	NA	NA
VEC73673.1|3079625_3082172_-	trimethylamine-N-oxide reductase precursor	NA	A0A077SK27	Escherichia_phage	31.0	2.0e-71
VEC73674.1|3082171_3083344_-	cytochrome c-type protein torC	NA	NA	NA	NA	NA
VEC73675.1|3083473_3084166_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.0	4.5e-18
VEC73676.1|3084245_3085166_-	solute-binding periplasmic protein	NA	NA	NA	NA	NA
VEC73677.1|3085293_3087981_+	hybrid sensory histidine kinase TorS	NA	A0A1V0SGX0	Hokovirus	32.5	3.1e-38
VEC73678.1|3088063_3089137_+	putative electron transport protein	NA	NA	NA	NA	NA
VEC73679.1|3089185_3089359_-	protein GnsA	NA	NA	NA	NA	NA
VEC73680.1|3090450_3091761_-	periplasmic AppA protein [includes: phosphoanhydrid phosphohydrolase and 4-phytase]	NA	NA	NA	NA	NA
VEC73681.1|3091945_3093082_-	cytochrome bd-II oxidase subunit 2	NA	NA	NA	NA	NA
VEC73682.1|3093093_3094638_-	cytochrome bd-II oxidase subunit I	NA	NA	NA	NA	NA
VEC73683.1|3094771_3095629_-	hydrogenase-1 operon protein HyaF	NA	NA	NA	NA	NA
VEC73684.1|3095625_3096024_-	hydrogenase-1 operon protein	NA	NA	NA	NA	NA
VEC73685.1|3096020_3096608_-|protease	hydrogenase 1 maturation protease	protease	NA	NA	NA	NA
>prophage 11
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	3179863	3190789	4972355	tRNA	Escherichia_phage(50.0%)	7	NA	NA
VEC73761.1|3179863_3180481_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
VEC73762.1|3180491_3181160_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	49.3	1.0e-54
VEC73763.1|3181197_3182937_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	49.7	3.7e-149
VEC73764.1|3183175_3184468_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
VEC73765.1|3184558_3185902_-	putative ATPase	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
VEC73766.1|3185912_3186524_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEC73767.1|3186682_3190789_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
>prophage 12
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	3413881	3433268	4972355	integrase,protease,tRNA,transposase	Escherichia_phage(20.0%)	18	3409198:3409212	3439386:3439400
3409198:3409212	attL	GCAGATCGACAAAGC	NA	NA	NA	NA
VEC73984.1|3413881_3415546_-|tRNA	glutaminyl-tRNA synthetase	tRNA	A0A222YZ70	Escherichia_phage	98.9	0.0e+00
VEC73985.1|3415748_3417695_-	N-acetylglucosamine-specific PTS system EIICBA components	NA	A0A2I7SAJ6	Vibrio_phage	47.3	9.2e-08
VEC73986.1|3418027_3418828_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
VEC73987.1|3418887_3420036_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
VEC73988.1|3420044_3421265_+	N-acetylglucosamine repressor	NA	NA	NA	NA	NA
VEC73989.1|3421312_3422065_+	N-acetylglucosamine metabolism NagD protein	NA	NA	NA	NA	NA
VEC73990.1|3422250_3422613_+|transposase	transposase	transposase	NA	NA	NA	NA
VEC73991.1|3422638_3422773_+|transposase	transposase	transposase	NA	NA	NA	NA
VEC73992.1|3422997_3423600_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	56.8	1.3e-61
VEC73993.1|3423897_3425562_+	asparagine synthetase B	NA	A9YVS6	Ostreococcus_tauri_virus	39.5	6.1e-85
VEC73994.1|3425776_3426040_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC73995.1|3427231_3428407_-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA	NA
VEC73996.1|3428552_3429485_+|tRNA	tRNA-i(6)A37 thiotransferase enzyme MiaB	tRNA	NA	NA	NA	NA
VEC73997.1|3429511_3430318_-|integrase	putative integrase	integrase	NA	NA	NA	NA
VEC73998.1|3430536_3431049_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VEC73999.1|3431149_3431611_+|tRNA	tRNA-i(6)A37 thiotransferase enzyme MiaB	tRNA	NA	NA	NA	NA
VEC74000.1|3431724_3432804_+	PhoH-like protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.6	4.3e-47
VEC74001.1|3432800_3433268_+|protease	metalloprotease	protease	NA	NA	NA	NA
3439386:3439400	attR	GCTTTGTCGATCTGC	NA	NA	NA	NA
>prophage 13
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	3589678	3678555	4972355	protease,tRNA,transposase	Bacillus_phage(28.57%)	60	NA	NA
VEC74148.1|3589678_3590596_+|protease	protease, membrane anchored	protease	NA	NA	NA	NA
VEC74149.1|3590592_3591051_+	nodulation efficiency family protein	NA	NA	NA	NA	NA
VEC74150.1|3591236_3591599_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74151.1|3591965_3594119_+	putative adhesin	NA	NA	NA	NA	NA
VEC74152.1|3594204_3594627_+	putative lipoprotein	NA	NA	NA	NA	NA
VEC74153.1|3594623_3594827_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74154.1|3594830_3595238_-	DNA-binding transcriptional regulator CueR	NA	NA	NA	NA	NA
VEC74155.1|3595234_3596410_-	type I secretion system protein	NA	NA	NA	NA	NA
VEC74156.1|3596406_3598569_-	type I secretion system, ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	31.9	4.1e-17
VEC74157.1|3598572_3611226_-	adhesin for cattle intestine colonization	NA	NA	NA	NA	NA
VEC74158.1|3611283_3619350_-	adhesin for cattle intestine colonization	NA	NA	NA	NA	NA
VEC74159.1|3619554_3620814_-	putative type I secretion protein	NA	NA	NA	NA	NA
VEC74160.1|3621151_3622444_-	putative amino acid permease	NA	NA	NA	NA	NA
VEC74161.1|3622446_3623379_-	glutaminase 1	NA	NA	NA	NA	NA
VEC74162.1|3623641_3626146_+	copper-transporting P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.5	1.3e-115
VEC74163.1|3627572_3628052_+|tRNA	protein YbaK containing prolyl-tRNA synthetase associated domain	tRNA	NA	NA	NA	NA
VEC74164.1|3628088_3629741_-	protein UshA precursor [includes: UDP-sugar hydrolase; 5'-nucleotidase]	NA	NA	NA	NA	NA
VEC74165.1|3629958_3631179_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
VEC74166.1|3631416_3633093_+	putative transport protein	NA	NA	NA	NA	NA
VEC74167.1|3633178_3633781_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	56.8	1.3e-61
VEC74168.1|3634005_3634527_-|transposase	transposase	transposase	NA	NA	NA	NA
VEC74169.1|3634657_3635962_-	inosine-guanosine kinase	NA	NA	NA	NA	NA
VEC74170.1|3636113_3637073_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	24.3	8.5e-15
VEC74171.1|3637069_3638032_-	ferrochelatase	NA	NA	NA	NA	NA
VEC74172.1|3638163_3638808_-	adenylate kinase	NA	NA	NA	NA	NA
VEC74173.1|3638988_3640863_-	chaperone (heat shock protein)	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.8	3.0e-117
VEC74174.1|3640972_3641578_-	recombination and repair protein RecR	NA	NA	NA	NA	NA
VEC74175.1|3641577_3641907_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEC74176.1|3644019_3644571_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.3	3.7e-31
VEC74177.1|3644723_3645101_-	inner membrane protein	NA	NA	NA	NA	NA
VEC74178.1|3645170_3645698_+	primosomal replication protein N	NA	NA	NA	NA	NA
VEC74179.1|3645711_3645873_+	small protein involved in the cell envelope stress response	NA	NA	NA	NA	NA
VEC74180.1|3646084_3649447_-	potassium efflux protein	NA	NA	NA	NA	NA
VEC74181.1|3649574_3650222_-	acrAB operon repressor	NA	NA	NA	NA	NA
VEC74182.1|3650363_3651557_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
VEC74183.1|3651579_3654729_+	acriflavin resistance protein B	NA	S5VTK5	Leptospira_phage	23.9	4.7e-54
VEC74184.1|3655274_3655649_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEC74185.1|3655674_3655893_+	hemolysin expression-modulating protein	NA	NA	NA	NA	NA
VEC74186.1|3656064_3656616_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VEC74187.1|3656731_3657202_+	inner membrane protein	NA	NA	NA	NA	NA
VEC74188.1|3657365_3658916_+	putative signal transduction protein	NA	NA	NA	NA	NA
VEC74189.1|3658957_3659311_-	RNA signal recognition particle 4.5S RNA	NA	NA	NA	NA	NA
VEC74190.1|3659689_3660001_+	methylated DNA-protein cysteine alkyltransferase	NA	NA	NA	NA	NA
VEC74191.1|3660031_3660604_-	putative lipoprotein	NA	NA	NA	NA	NA
VEC74192.1|3660820_3661681_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
VEC74193.1|3661729_3663016_-	ammonia channel precursor (ammonia transporter)	NA	NA	NA	NA	NA
VEC74194.1|3663045_3663384_-	glutamine synthetase	NA	NA	NA	NA	NA
VEC74195.1|3663564_3665346_-	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.3	1.4e-42
VEC74196.1|3665338_3667111_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	29.7	1.0e-50
VEC74197.1|3667140_3667599_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
VEC74198.1|3667751_3668570_-	putative hydrolase	NA	NA	NA	NA	NA
VEC74199.1|3668669_3670370_+	bacterial extracellular solute-binding protein, family 5	NA	NA	NA	NA	NA
VEC74200.1|3670434_3671130_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	1.9e-88
VEC74201.1|3671181_3671580_-	thioesterase protein YbaW	NA	NA	NA	NA	NA
VEC74202.1|3671673_3672045_-	putative DNA uptake protein	NA	NA	NA	NA	NA
VEC74203.1|3672195_3674067_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEC74204.1|3674258_3674531_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	58.4	1.1e-20
VEC74205.1|3674739_3676107_-|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	65.8	1.3e-170
VEC74206.1|3676103_3677093_-|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	31.6	5.1e-39
VEC74207.1|3677280_3678555_-|protease	ATP-dependent specificity component of ClpP serine protease	protease	G3M9Z9	Bacillus_virus	56.4	8.7e-132
>prophage 14
LR134221	Escherichia coli strain NCTC11113 genome assembly, chromosome: 1	4972355	4260919	4334979	4972355	transposase	uncultured_Mediterranean_phage(22.73%)	63	NA	NA
VEC74728.1|4260919_4261165_+|transposase	transposase, IS4 family protein	transposase	NA	NA	NA	NA
VEC74729.1|4262117_4264232_-	UvrD/REP helicase	NA	G3MA40	Bacillus_virus	24.1	5.9e-08
VEC74730.1|4264228_4270570_-	helicase superfamily protein	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	22.1	3.7e-58
VEC74731.1|4270569_4275477_-	Type I restriction-modification system methyltransferase subunit	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	21.2	1.7e-29
VEC74732.1|4275479_4277381_-	helicase domain-containing protein	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	24.3	6.0e-12
VEC74733.1|4277389_4278337_-	helicase domain-containing protein	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	30.2	9.6e-27
VEC74734.1|4278560_4284875_-	helicase superfamily protein	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	21.8	3.1e-36
VEC74735.1|4284874_4288234_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74736.1|4288445_4290098_+	Apolipoprotein A1/A4/E domain	NA	NA	NA	NA	NA
VEC74737.1|4290104_4290812_+	flagellar motor protein MotS	NA	NA	NA	NA	NA
VEC74738.1|4290815_4291919_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74739.1|4292163_4292472_+	N-acetylneuraminate epimerase 2	NA	NA	NA	NA	NA
VEC74740.1|4292458_4293331_+	putative restriction endonuclease	NA	NA	NA	NA	NA
VEC74741.1|4293952_4295989_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74742.1|4296484_4296703_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74743.1|4296941_4297094_-	putative restriction methylase	NA	NA	NA	NA	NA
VEC74744.1|4297149_4297377_-	Aec78	NA	NA	NA	NA	NA
VEC74745.1|4297388_4297877_-	aec77	NA	NA	NA	NA	NA
VEC74746.1|4297873_4298248_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA	NA
VEC74747.1|4298337_4298706_-	antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage	NA	NA	NA	NA	NA
VEC74748.1|4298755_4298869_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74749.1|4298868_4299090_-	CP4-44 prophage	NA	A0A142F0X9	Klebsiella_phage	45.8	1.9e-10
VEC74750.1|4299176_4299653_-	putative DNA repair protein	NA	NA	NA	NA	NA
VEC74751.1|4299668_4300154_-	anti-restriction protein	NA	A9J566	Pseudomonas_phage	31.5	3.4e-12
VEC74752.1|4300208_4301030_-	CP4-57 prophage protein	NA	A0A2C9CX26	Yersinia_phage	38.1	3.0e-45
VEC74753.1|4301208_4301364_-	putative plasmid-like protein	NA	NA	NA	NA	NA
VEC74754.1|4301442_4301898_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74755.1|4301973_4302324_-	membrane protein	NA	NA	NA	NA	NA
VEC74756.1|4302320_4304489_-	membrane protein, yeeR	NA	NA	NA	NA	NA
VEC74757.1|4304609_4307729_-	antigen 43	NA	NA	NA	NA	NA
VEC74758.1|4308062_4308935_-	putative GTP-binding protein	NA	NA	NA	NA	NA
VEC74759.1|4309044_4310064_-	phage-associated protein	NA	NA	NA	NA	NA
VEC74760.1|4311355_4311571_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74761.1|4311556_4312129_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74762.1|4312214_4312421_-	putative phage-related regulatory protein	NA	NA	NA	NA	NA
VEC74763.1|4313119_4313329_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
VEC74764.1|4313676_4313877_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74765.1|4314075_4314645_+	malate transporter	NA	NA	NA	NA	NA
VEC74766.1|4314904_4315306_+	ybl85	NA	NA	NA	NA	NA
VEC74767.1|4315293_4315728_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VEC74768.1|4315727_4315964_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74769.1|4316082_4316463_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	98.4	2.1e-65
VEC74770.1|4316459_4316807_+	prophage CP-933O IS protein	NA	A0A0P0ZBY2	Stx2-converting_phage	100.0	2.2e-61
VEC74771.1|4316856_4318242_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.3	3.4e-259
VEC74772.1|4318480_4319839_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEC74773.1|4320589_4320847_-	Biofilm development protein YmgB/AriR	NA	NA	NA	NA	NA
VEC74774.1|4320970_4321081_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC74775.1|4321608_4321818_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	98.6	2.2e-32
VEC74776.1|4321818_4322112_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	87.9	7.2e-42
VEC74777.1|4322597_4323119_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VEC74778.1|4323115_4324069_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VEC74779.1|4324155_4326480_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VEC74780.1|4326524_4327427_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VEC74781.1|4327423_4328422_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VEC74782.1|4328418_4329375_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VEC74783.1|4329375_4330143_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VEC74784.1|4330702_4330960_-	KpLE2 phage-like element	NA	NA	NA	NA	NA
VEC74785.1|4331042_4331285_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	92.4	4.7e-39
VEC74786.1|4331281_4331695_-|transposase	transposase ORF B (fragment), IS911	transposase	Q716C2	Shigella_phage	95.6	1.5e-61
VEC74787.1|4332011_4333163_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VEC74788.1|4333082_4333433_-|transposase	transposase ORF A, IS3 family	transposase	Q716C1	Shigella_phage	97.7	8.9e-39
VEC74789.1|4333533_4334106_+	lysogenic conversion protein from Bacteriophage P2-EC53	NA	Q858R9	Enterobacteria_phage	69.0	2.2e-71
VEC74790.1|4334154_4334979_-	Uncharacterised protein	NA	L7TR00	Rhizobium_phage	35.5	3.0e-16
