assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	1	1000718-1001112	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|LR134216.1_999427_999568_-,NA	NA|434aa|up_9|LR134216.1_990124_991426_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|LR134216.1_991473_993708_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|LR134216.1_993785_994034_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|LR134216.1_994033_994369_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|LR134216.1_994439_995231_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|LR134216.1_995458_997096_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|LR134216.1_997183_998482_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|LR134216.1_998541_999414_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|LR134216.1_999427_999568_-	NA	NA|224aa|up_0|LR134216.1_999706_1000378_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134216.1_1001750_1003229_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134216.1_1003255_1004533_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134216.1_1004851_1005637_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134216.1_1005706_1007161_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134216.1_1007182_1008592_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134216.1_1008569_1009349_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134216.1_1009345_1010206_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|LR134216.1_1010353_1010929_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|LR134216.1_1010945_1011206_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|LR134216.1_1011196_1012468_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	2	1019346-1019679	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|LR134216.1_1017992_1018133_-,NA	NA|287aa|up_9|LR134216.1_1009345_1010206_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|LR134216.1_1010353_1010929_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|LR134216.1_1010945_1011206_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|LR134216.1_1011196_1012468_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_5|LR134216.1_1012545_1012911_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|LR134216.1_1013226_1015026_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|LR134216.1_1015025_1016738_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|LR134216.1_1016811_1017546_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|47aa|up_1|LR134216.1_1017992_1018133_-	NA	NA|371aa|up_0|LR134216.1_1018155_1019268_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|LR134216.1_1019761_1020799_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134216.1_1021050_1021959_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134216.1_1021960_1023388_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134216.1_1023387_1023993_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134216.1_1024042_1024366_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134216.1_1024559_1024871_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134216.1_1024889_1025600_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134216.1_1025599_1026079_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134216.1_1026075_1027125_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134216.1_1027105_1027867_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	3	1524116-1524233	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|300aa|up_9|LR134216.1_1513599_1514499_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134216.1_1514691_1515882_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134216.1_1515878_1517138_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|LR134216.1_1517127_1518756_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134216.1_1519028_1520387_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134216.1_1520391_1521468_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134216.1_1521509_1521716_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134216.1_1521930_1522581_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134216.1_1522634_1522889_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134216.1_1522888_1524019_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134216.1_1524252_1526538_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|LR134216.1_1527233_1530986_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134216.1_1531113_1531836_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|LR134216.1_1531982_1534610_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|LR134216.1_1534758_1536447_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|LR134216.1_1536443_1537067_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|LR134216.1_1537210_1541605_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|LR134216.1_1541605_1543255_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|LR134216.1_1543259_1544036_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|LR134216.1_1544109_1545294_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	4	2162151-2162274	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|79aa|up_9|LR134216.1_2151058_2151295_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134216.1_2151605_2153018_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134216.1_2153574_2153784_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134216.1_2154238_2154865_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134216.1_2154885_2156988_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134216.1_2157000_2157639_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134216.1_2157702_2158371_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134216.1_2158367_2159153_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134216.1_2159204_2159969_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134216.1_2159980_2161585_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134216.1_2162588_2163845_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134216.1_2163885_2165259_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134216.1_2165473_2166115_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134216.1_2166154_2167303_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134216.1_2167593_2168805_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134216.1_2168917_2169850_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134216.1_2169846_2170872_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134216.1_2171425_2172595_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134216.1_2172829_2173411_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134216.1_2173538_2174354_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	6	3097560-3097704	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|222aa|up_9|LR134216.1_3085457_3086123_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|LR134216.1_3086844_3087753_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|LR134216.1_3087944_3089966_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|LR134216.1_3090544_3091222_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|LR134216.1_3091214_3091970_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|LR134216.1_3091956_3093111_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|LR134216.1_3093107_3094148_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|LR134216.1_3094234_3095524_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|LR134216.1_3095582_3096059_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|LR134216.1_3096210_3097494_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134216.1_3097727_3099989_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134216.1_3100171_3101605_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134216.1_3101680_3102733_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134216.1_3102916_3103870_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134216.1_3103910_3104906_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134216.1_3105060_3105879_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134216.1_3105879_3106938_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134216.1_3106940_3107630_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134216.1_3107629_3108403_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134216.1_3108569_3108719_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	7	3329510-3329606	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|LR134216.1_3321296_3321989_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134216.1_3322208_3322751_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|321aa|up_7|LR134216.1_3323134_3324097_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134216.1_3324098_3324311_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134216.1_3324418_3324940_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134216.1_3324975_3326361_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134216.1_3326534_3327029_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134216.1_3327031_3327754_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134216.1_3327871_3328381_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134216.1_3328377_3329445_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134216.1_3329639_3330533_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134216.1_3330529_3331345_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134216.1_3331355_3332615_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134216.1_3332624_3334292_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134216.1_3334608_3335658_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134216.1_3335679_3336915_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134216.1_3336925_3337711_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|LR134216.1_3337938_3339084_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134216.1_3339105_3340407_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134216.1_3340463_3341825_-	PRK08044, PRK08044, allantoinase AllB
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	8	3469751-3469895	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|357aa|up_9|LR134216.1_3454889_3455960_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|LR134216.1_3456052_3456634_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|LR134216.1_3456638_3458456_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|LR134216.1_3458611_3459985_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|LR134216.1_3460060_3461380_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|LR134216.1_3461786_3463082_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|LR134216.1_3463139_3463829_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|LR134216.1_3464018_3465221_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|LR134216.1_3465217_3468364_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|423aa|up_0|LR134216.1_3468405_3469674_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|LR134216.1_3469918_3470827_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|326aa|down_1|LR134216.1_3470885_3471863_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|40aa|down_2|LR134216.1_3472223_3472343_+	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional	NA|95aa|down_3|LR134216.1_3472509_3472794_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|LR134216.1_3472865_3473543_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|LR134216.1_3473800_3473992_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|LR134216.1_3474041_3474566_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|LR134216.1_3474748_3475207_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|LR134216.1_3475326_3476136_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|LR134216.1_3476152_3477268_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	9	3607032-3607287	3	PILER-CR	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	CATCAGGCACCGTGCACCGGACGCCGGATGCGGCGTAAACGCCTTATCCGGCCT	54	1	1	3607203-3607266	LR134216.1_3607288-3607351	NA	2	2	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA|326aa|up_2|LR134216.1_3603639_3604617_-,NA	NA|156aa|up_9|LR134216.1_3597467_3597935_-	pfam03748, FliL, Flagellar basal body-associated protein FliL	NA|354aa|up_8|LR134216.1_3597942_3599004_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|104aa|up_7|LR134216.1_3599000_3599312_-	PRK06064, PRK06064, thiolase domain-containing protein	NA|131aa|up_6|LR134216.1_3599316_3599709_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_5|LR134216.1_3599731_3601048_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_4|LR134216.1_3601338_3602253_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_3|LR134216.1_3602738_3603581_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_2|LR134216.1_3603639_3604617_-	NA	NA|310aa|up_1|LR134216.1_3604633_3605563_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_0|LR134216.1_3605577_3606954_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|down_0|LR134216.1_3607375_3607675_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|222aa|down_1|LR134216.1_3608789_3609455_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_2|LR134216.1_3609658_3610444_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_3|LR134216.1_3610522_3611260_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_4|LR134216.1_3611259_3612462_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_5|LR134216.1_3612605_3613319_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_6|LR134216.1_3613318_3613750_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_7|LR134216.1_3613752_3614088_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_8|LR134216.1_3614169_3614907_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|down_9|LR134216.1_3614987_3615266_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM
GCA_900636045.1_38656_G02	LR134216	Escherichia coli strain NCTC10973 genome assembly, chromosome: 1	10	3859926-3860067	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|96aa|up_9|LR134216.1_3848917_3849205_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|LR134216.1_3849201_3850488_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|LR134216.1_3850538_3851480_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|LR134216.1_3851494_3852265_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|LR134216.1_3852737_3854252_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|LR134216.1_3854282_3855425_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|LR134216.1_3855553_3856771_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|LR134216.1_3856844_3858398_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|LR134216.1_3858506_3859292_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|LR134216.1_3859297_3859888_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|LR134216.1_3860096_3860492_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|LR134216.1_3860753_3863975_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|LR134216.1_3863992_3865141_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|LR134216.1_3865596_3866418_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|LR134216.1_3866584_3867499_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|LR134216.1_3867564_3868515_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|LR134216.1_3868516_3868966_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|LR134216.1_3869090_3869585_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|LR134216.1_3869584_3872401_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|LR134216.1_3872443_3873385_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
