The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134217	Klebsiella aerogenes strain NCTC10317 genome assembly, chromosome: 1	5189413	1641388	1648293	5189413		Planktothrix_phage(33.33%)	6	NA	NA
VEC28599.1|1641388_1642252_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
VEC28604.1|1642262_1643036_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
VEC28607.1|1643276_1644173_-	Transcription regulator [contains diacylglycerol kinase catalytic domain]	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
VEC28609.1|1644415_1645777_-	peptidase U32	NA	Q6DW11	Phage_TP	94.8	1.8e-207
VEC28612.1|1646095_1646818_-	DNA-binding transcriptional regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
VEC28616.1|1646814_1648293_-	Sensory histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
>prophage 2
LR134217	Klebsiella aerogenes strain NCTC10317 genome assembly, chromosome: 1	5189413	2622527	2633416	5189413		Escherichia_phage(87.5%)	9	NA	NA
VEC31509.1|2622527_2625635_+	Beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
VEC31512.1|2625689_2626955_+	Lactose permease	NA	NA	NA	NA	NA
VEC31514.1|2626985_2628074_-	putative RecF protein	NA	A0A077SLJ9	Escherichia_phage	99.7	5.2e-210
VEC31516.1|2628160_2628421_-	Uncharacterised protein	NA	A0A077SK33	Escherichia_phage	98.8	5.4e-41
VEC31518.1|2628718_2629579_+	Beta-lactamase	NA	A0A077SL40	Escherichia_phage	99.0	6.4e-155
VEC31520.1|2629599_2630361_-	DeoR-family trancriptional regulator	NA	A0A077SK06	Escherichia_phage	99.6	2.5e-134
VEC31522.1|2630818_2631526_+	2-hydroxy-3-oxopropionate reductase	NA	A0A077SLF7	Escherichia_phage	99.6	2.2e-121
VEC31524.1|2631537_2632803_+	Predicted pyridoxine biosynthesis protein (probably from glycolaldehide)	NA	A0A077SLJ7	Escherichia_phage	99.8	7.8e-234
VEC31526.1|2632795_2633416_+	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 3
LR134217	Klebsiella aerogenes strain NCTC10317 genome assembly, chromosome: 1	5189413	3016126	3133460	5189413	lysis,capsid,tail,head,integrase,terminase,tRNA,protease,plate,portal	Enterobacteria_phage(30.56%)	123	3074416:3074430	3131271:3131285
VEC32202.1|3016126_3017266_-	late control D family protein	NA	B9A7A9	Serratia_phage	70.2	2.3e-144
VEC32204.1|3017420_3018593_+|tail	major tail sheath protein FI	tail	A0A0A7NV69	Enterobacteria_phage	70.0	1.6e-156
VEC32206.1|3018592_3019108_+|tail	major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	61.2	2.2e-57
VEC32208.1|3019153_3019471_+|tail	tail E family protein	tail	B9A7B2	Serratia_phage	54.8	1.0e-17
VEC32210.1|3019615_3022588_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	46.7	8.3e-218
VEC32212.1|3022606_3023071_+	P2 GpU family protein	NA	A0A0A7NV65	Enterobacteria_phage	65.3	3.2e-52
VEC32214.1|3023246_3025151_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32216.1|3025447_3026545_-|tail	tail fiber repeat 2 protein	tail	A0A0M3ULH6	Salmonella_phage	27.8	4.2e-10
VEC32218.1|3026544_3026757_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32220.1|3026753_3029780_-	phage Tail protein I	NA	D5LGZ2	Escherichia_phage	40.7	1.1e-23
VEC32222.1|3029769_3030693_-|plate	Baseplate J family protein	plate	A0A0A7NPY5	Enterobacteria_phage	43.6	2.2e-52
VEC32224.1|3030694_3031045_-	GPW/gp25 family protein	NA	A0A0A7NQ90	Enterobacteria_phage	54.8	4.6e-27
VEC32226.1|3031041_3031629_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	61.0	2.2e-61
VEC32228.1|3031625_3032261_-	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	50.5	3.9e-56
VEC32230.1|3032257_3032725_-|tail	P2 phage tail completion R family protein	tail	A0A0A7NPU6	Enterobacteria_phage	59.5	5.4e-47
VEC32232.1|3032906_3033251_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32234.1|3033247_3033793_-	lysozyme from lambdoid prophage DLP12	NA	Q1I0Z1	Pasteurella_virus	42.5	8.2e-31
VEC32236.1|3033789_3034068_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32238.1|3034064_3034265_-|tail	tail X family protein	tail	A0A0A7NV57	Enterobacteria_phage	63.1	1.6e-16
VEC32240.1|3034264_3034780_-|head	head completion protein	head	A0A0A7NPU2	Enterobacteria_phage	49.4	4.1e-40
VEC32242.1|3034892_3035750_-|terminase	small terminase subunit	terminase	A0A0A7NPX9	Enterobacteria_phage	61.3	2.8e-70
VEC32244.1|3035799_3036834_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M3ULA3	Salmonella_phage	50.0	6.2e-96
VEC32246.1|3036843_3037170_-|capsid	capsid scaffolding	capsid	A0A0A7NRY7	Enterobacteria_phage	52.8	1.3e-20
VEC32248.1|3037186_3037684_-|capsid	capsid scaffolding	capsid	A0A0A7NRY7	Enterobacteria_phage	76.1	5.7e-63
VEC32250.1|3037840_3038722_+|terminase	terminase	terminase	A0A0A7NV54	Enterobacteria_phage	71.5	2.8e-113
VEC32252.1|3038669_3039569_+|terminase	terminase-like protein	terminase	A0A0A7NV54	Enterobacteria_phage	64.5	4.6e-111
VEC32254.1|3039562_3040624_+|portal	phage portal protein, PBSX family	portal	A0A0A7NPT9	Enterobacteria_phage	68.1	9.1e-143
VEC32256.1|3041311_3042412_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32258.1|3042414_3043632_-	Uncharacterized conserved protein	NA	Q2P9X8	Enterobacteria_phage	32.9	3.3e-11
VEC32260.1|3043940_3044153_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32262.1|3044351_3044546_+	Transcriptional repressor pifC	NA	NA	NA	NA	NA
VEC32264.1|3044548_3045418_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32266.1|3045474_3045654_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32268.1|3045829_3045949_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32270.1|3045945_3048549_-	replication gene A protein	NA	A0A0M4RTM8	Salmonella_phage	51.3	1.7e-190
VEC32272.1|3048548_3048722_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32274.1|3048718_3049738_-	phosphoadenosine phosphosulfate reductase	NA	B7SYG0	Stenotrophomonas_phage	43.2	1.3e-66
VEC32278.1|3049778_3049925_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32280.1|3050002_3050266_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32282.1|3050281_3050659_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32284.1|3050674_3050893_-	Uncharacterised protein	NA	A0A0M5M1I3	Salmonella_phage	49.1	3.6e-06
VEC32286.1|3050913_3051192_-	bacteriophage P2 Cox-like protein	NA	Q1JS60	Enterobacteria_phage	87.8	2.4e-42
VEC32288.1|3051728_3052712_+	tyrosine recombinase XerC	NA	Q83VS6	Escherichia_phage	79.8	7.1e-150
VEC32290.1|3052976_3053990_+	Probable diguanylate cyclase YeaP	NA	G3MA91	Bacillus_virus	33.8	1.1e-12
VEC32292.1|3054047_3054149_+	membrane protein	NA	NA	NA	NA	NA
VEC32294.1|3054525_3054789_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEC32296.1|3054919_3055558_-	Putative transport protein	NA	NA	NA	NA	NA
VEC32298.1|3055647_3056562_-	Lipid A biosynthesis lauroyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
VEC32300.1|3057223_3058267_-	type II L-asparaginase	NA	NA	NA	NA	NA
VEC32302.1|3058569_3059778_+	HD-GYP domain	NA	NA	NA	NA	NA
VEC32304.1|3059851_3061636_+	Diguanylate cyclase DosC	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
VEC32306.1|3061642_3062533_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEC32308.1|3062653_3064162_+	protein YigC	NA	NA	NA	NA	NA
VEC32310.1|3064472_3065159_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
VEC32312.1|3065776_3066409_-	DNA-binding protein	NA	NA	NA	NA	NA
VEC32314.1|3066495_3066600_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32316.1|3066975_3067173_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32318.1|3067288_3068299_-	cytochrome bd-I oxidase subunit II	NA	NA	NA	NA	NA
VEC32320.1|3068295_3069702_-	cytochrome bd ubiquinol oxidase, subunit I	NA	NA	NA	NA	NA
VEC32322.1|3069757_3070645_-	manganese catalase	NA	NA	NA	NA	NA
VEC32324.1|3070661_3071168_-	protein YciE	NA	NA	NA	NA	NA
VEC32326.1|3071194_3071689_-	protein YciF	NA	NA	NA	NA	NA
VEC32328.1|3071779_3071965_-	Stress-induced bacterial acidophilic repeat motif.	NA	NA	NA	NA	NA
VEC32330.1|3072367_3072475_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32332.1|3072586_3073780_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
VEC32334.1|3073892_3074120_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
3074416:3074430	attL	TGGCTGGCGTTCTTT	NA	NA	NA	NA
VEC32336.1|3074569_3074893_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
VEC32338.1|3074885_3075278_+	amino acid-binding ACT domain-containing protein	NA	NA	NA	NA	NA
VEC32340.1|3075274_3075988_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
VEC32342.1|3076260_3076413_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
VEC32344.1|3076567_3078064_-|tail	putative tail fiber	tail	A0A0P0IDN1	Klebsiella_phage	63.7	6.4e-126
VEC32346.1|3078132_3082836_-|tail	Phage tail fiber protein	tail	Q6UAW1	Klebsiella_phage	34.6	7.4e-03
VEC32348.1|3082819_3087769_-|tail	Phage tail fiber protein	tail	A0A0P0IKE4	Klebsiella_phage	31.9	8.5e-159
VEC32350.1|3087731_3090785_-|tail	Phage tail fiber protein	tail	Q6UAW1	Klebsiella_phage	87.3	0.0e+00
VEC32352.1|3090847_3091441_-	gp20	NA	K7PHE5	Enterobacteria_phage	77.2	8.0e-80
VEC32354.1|3091931_3092642_-|tail	Phage tail assembly protein	tail	Q6UAW4	Klebsiella_phage	90.7	8.5e-137
VEC32356.1|3092643_3093399_-|tail	Phage minor tail protein	tail	Q6UAW5	Klebsiella_phage	80.9	6.1e-125
VEC32358.1|3093395_3093734_-|tail	phage minor tail family protein	tail	Q6UAW6	Klebsiella_phage	88.4	2.4e-57
VEC32360.1|3093733_3094834_-|tail	tail length tape measure protein	tail	Q6UAW7	Klebsiella_phage	77.5	1.6e-145
VEC32362.1|3094833_3097068_-|tail	phage tail tape measure protein	tail	Q6UAW7	Klebsiella_phage	87.4	0.0e+00
VEC32364.1|3097300_3097666_-	Uncharacterised protein	NA	Q6UAW8	Klebsiella_phage	89.3	1.6e-51
VEC32366.1|3097723_3098185_-	Uncharacterised protein	NA	Q6UAX0	Klebsiella_phage	83.7	7.8e-67
VEC32368.1|3098216_3098618_-	phage protein, HK97 gp10 family	NA	Q6UAX1	Klebsiella_phage	94.0	1.7e-62
VEC32370.1|3098614_3099004_-	Uncharacterised protein	NA	Q6UAX2	Klebsiella_phage	86.0	9.6e-58
VEC32372.1|3098984_3099323_-	Uncharacterised protein	NA	Q6UAX3	Klebsiella_phage	91.1	5.6e-54
VEC32374.1|3099319_3099637_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	Q6UAX4	Klebsiella_phage	89.8	2.6e-45
VEC32376.1|3099617_3099878_-	Uncharacterised protein	NA	Q6UAX5	Klebsiella_phage	63.9	1.5e-22
VEC32378.1|3099936_3101223_-|head	peptidase U35, phage prohead HK97	head	Q6UAX6	Klebsiella_phage	89.5	2.0e-216
VEC32380.1|3101300_3102221_-|capsid	Phage capsid and scaffold	capsid	Q6UAX7	Klebsiella_phage	87.9	4.8e-148
VEC32382.1|3102257_3103517_-|portal	phage portal protein, HK97 family	portal	Q6UAX8	Klebsiella_phage	90.5	9.5e-224
VEC32384.1|3103689_3105411_-|terminase	phage terminase	terminase	Q7Y413	Yersinia_phage	57.4	1.1e-190
VEC32386.1|3105410_3105845_-|terminase	P27 family phage terminase small subunit	terminase	A0A1J0GV10	Halomonas_phage	61.9	9.4e-30
VEC32388.1|3106092_3106524_-	Uncharacterised protein	NA	Q6UAS0	Klebsiella_phage	61.3	2.4e-41
VEC32390.1|3106520_3106838_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32392.1|3108276_3108627_-	Uncharacterised protein	NA	R9TPM9	Aeromonas_phage	36.8	2.5e-09
VEC32394.1|3108623_3109121_-	lysozyme from lambdoid prophage DLP12	NA	A0A1V0E5Q7	Salmonella_phage	87.0	8.7e-80
VEC32396.1|3109120_3109336_-|lysis	lysis S family protein	lysis	A5LH82	Enterobacteria_phage	87.3	7.9e-30
VEC32398.1|3110748_3111351_-	Uncharacterised protein	NA	H9C175	Pectobacterium_phage	67.5	4.2e-76
VEC32400.1|3111367_3112399_-	Putative cytoplasmic protein	NA	A0A291AWV9	Escherichia_phage	49.6	1.1e-95
VEC32402.1|3112398_3112602_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32404.1|3112598_3112991_-|protease	SOS-response repressor and protease LexA	protease	K7PHB4	Enterobacterial_phage	36.6	8.0e-12
VEC32406.1|3113031_3113289_-	Uncharacterised protein	NA	H6WRY6	Salmonella_phage	56.9	5.4e-17
VEC32408.1|3113333_3113567_-	DNA-damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	72.4	1.3e-25
VEC32410.1|3114192_3115170_+	thymidylate synthase	NA	A0A1G5SB41	Enterococcus_phage	31.5	1.1e-22
VEC32412.1|3115169_3116114_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32414.1|3116116_3117199_-	Plasmid maintenance system antidote protein	NA	A0A075BTZ7	Microcystis_phage	38.6	2.1e-09
VEC32416.1|3117195_3117474_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32418.1|3118881_3119322_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32420.1|3119792_3120776_-	Primosomal protein I	NA	A0A0U2RT81	Escherichia_phage	55.8	2.4e-44
VEC32422.1|3120827_3121382_-	bacteriophage regulatory protein CII	NA	NA	NA	NA	NA
VEC32424.1|3121701_3122091_+	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	60.2	6.7e-35
VEC32426.1|3122384_3122513_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32428.1|3122814_3122937_+	Gifsy-1 prophage protein	NA	NA	NA	NA	NA
VEC32430.1|3123143_3123515_+	DNA-binding transcriptional regulator IscR	NA	NA	NA	NA	NA
VEC32432.1|3123656_3125795_+	putative exodeoxyribonuclease VIII	NA	S4TNL0	Salmonella_phage	43.0	5.0e-100
VEC32434.1|3125847_3126093_+	Excisionase-like protein	NA	NA	NA	NA	NA
VEC32436.1|3126073_3127201_+|integrase	phage integrase family protein	integrase	O21925	Phage_21	57.8	1.8e-117
VEC32438.1|3127423_3127990_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC32440.1|3127986_3129507_-	Uncharacterized conserved protein	NA	A0A2I7RNF1	Vibrio_phage	21.5	1.1e-05
VEC32442.1|3129680_3130931_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
VEC32444.1|3131171_3131822_+	pseudouridine synthase	NA	NA	NA	NA	NA
3131271:3131285	attR	AAAGAACGCCAGCCA	NA	NA	NA	NA
VEC32446.1|3131838_3132297_+	Nudix-like NDP and NTP phosphohydrolase YmfB	NA	NA	NA	NA	NA
VEC32448.1|3132293_3133460_+|tRNA	tRNA-specific 2-thiouridylase mnmA	tRNA	NA	NA	NA	NA
>prophage 1
LR134218	Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 2	107897	146	4391	107897		Salmonella_phage(100.0%)	9	NA	NA
VEC38090.1|146_650_+	Uncharacterised protein	NA	J9Q754	Salmonella_phage	94.0	5.9e-84
VEC38092.1|700_904_+	Uncharacterised protein	NA	J9Q7I3	Salmonella_phage	95.5	4.1e-28
VEC38094.1|1498_1981_-	Uncharacterised protein	NA	J9Q805	Salmonella_phage	77.5	3.6e-70
VEC38096.1|2186_2468_-	Uncharacterised protein	NA	J9Q753	Salmonella_phage	82.8	3.4e-41
VEC38098.1|2470_2845_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38100.1|2972_3380_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38102.1|3499_3811_-	Uncharacterised protein	NA	J9Q7T7	Salmonella_phage	68.9	1.8e-30
VEC38104.1|3947_4160_-	Uncharacterised protein	NA	J9Q804	Salmonella_phage	77.9	4.4e-25
VEC38106.1|4172_4391_-	Uncharacterised protein	NA	J9Q6K7	Salmonella_phage	81.9	2.9e-27
>prophage 2
LR134218	Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 2	107897	8338	52434	107897		Salmonella_phage(87.5%)	41	NA	NA
VEC38110.1|8338_9934_+	type I restriction enzyme M protein	NA	A0A2H4PQP4	Staphylococcus_phage	42.7	1.5e-104
VEC38112.1|9890_11060_+	type-1 restriction enzyme specificity protein	NA	NA	NA	NA	NA
VEC38114.1|11176_14293_+	type I restriction enzyme R protein	NA	A0A220A398	Liberibacter_phage	23.9	1.0e-24
VEC38116.1|14354_14570_-	Uncharacterised protein	NA	J9Q747	Salmonella_phage	69.8	3.2e-15
VEC38118.1|14698_15277_-	Uncharacterised protein	NA	J9Q7H6	Salmonella_phage	57.0	3.0e-55
VEC38120.1|15404_15560_-	Uncharacterised protein	NA	H6WZJ7	Escherichia_phage	61.2	1.7e-05
VEC38122.1|15559_15985_-	Tellurite resistance protein	NA	Q71TK7	Escherichia_phage	80.9	9.8e-56
VEC38124.1|16285_16825_-	Uncharacterised protein	NA	J9Q6J9	Salmonella_phage	46.5	1.7e-28
VEC38126.1|16982_17579_-	ribonuclease H	NA	J9Q745	Salmonella_phage	93.4	3.1e-108
VEC38128.1|18169_18403_-	Uncharacterised protein	NA	J9Q7H5	Salmonella_phage	85.5	9.2e-32
VEC38130.1|18605_19199_-	BsuMI modification methylase subunit ydiP	NA	J9Q7T2	Salmonella_phage	95.4	1.2e-107
VEC38132.1|19383_20217_-	Uncharacterised protein	NA	J9Q7Z9	Salmonella_phage	56.4	1.1e-63
VEC38134.1|20342_20897_-	DNA polymerase III subunit epsilon	NA	J9Q6J8	Salmonella_phage	78.7	1.5e-80
VEC38135.1|20906_21326_-	Uncharacterised protein	NA	J9Q743	Salmonella_phage	73.4	5.5e-51
VEC38137.1|21388_22033_-	Dephospho-CoA kinase	NA	J9Q7H4	Salmonella_phage	77.6	6.2e-94
VEC38139.1|22032_22509_-	dihydrofolate reductase	NA	J9Q7T1	Salmonella_phage	80.3	1.3e-72
VEC38142.1|22505_22919_-	Uncharacterised protein	NA	J9Q7Z8	Salmonella_phage	76.6	1.8e-54
VEC38144.1|22920_24024_-	thymidylate synthase	NA	J9Q6J6	Salmonella_phage	79.8	2.5e-180
VEC38146.1|24217_25093_-	Uncharacterized protein conserved in bacteria	NA	J9Q742	Salmonella_phage	85.1	1.2e-140
VEC38148.1|25170_26313_-	ribonucleoside-diphosphate reductase class Ia beta subunit	NA	J9Q7H3	Salmonella_phage	95.8	9.0e-213
VEC38150.1|26443_28747_-	ribonucleoside-diphosphate reductase 1 subunit alpha	NA	J9Q7T0	Salmonella_phage	91.1	0.0e+00
VEC38152.1|28822_29392_-	Uncharacterised protein	NA	J9Q7Z7	Salmonella_phage	89.4	7.1e-94
VEC38154.1|29401_30148_-	Uncharacterised protein	NA	J9Q6J5	Salmonella_phage	61.7	2.9e-79
VEC38156.1|30137_32054_-	Probable DNA double-strand break repair Rad50 ATPase	NA	J9Q741	Salmonella_phage	84.6	2.1e-299
VEC38158.1|32283_33369_-	Uncharacterised protein	NA	J9Q7S9	Salmonella_phage	84.8	1.1e-183
VEC38160.1|33557_34052_-	Uncharacterised protein	NA	J9Q6J3	Salmonella_phage	67.1	1.0e-59
VEC38162.1|34127_34772_-	Uncharacterised protein	NA	J9Q739	Salmonella_phage	80.7	2.2e-99
VEC38164.1|35093_36191_+	initiator RepB protein	NA	J9Q7H0	Salmonella_phage	47.3	1.2e-73
VEC38166.1|36642_36855_-	Uncharacterised protein	NA	J9Q7S8	Salmonella_phage	80.0	4.3e-28
VEC38168.1|36854_37190_-	Uncharacterised protein	NA	J9Q7Z5	Salmonella_phage	67.6	3.6e-37
VEC38170.1|37899_40242_-	recombinase A	NA	J9Q736	Salmonella_phage	83.8	3.3e-28
VEC38172.1|40244_40511_-	Uncharacterised protein	NA	J9Q7G8	Salmonella_phage	84.1	1.7e-34
VEC38174.1|40510_41455_-	DNA polymerase I	NA	J9Q7S6	Salmonella_phage	93.0	3.1e-171
VEC38175.1|41515_42523_-	Uncharacterised protein	NA	J9Q7Z3	Salmonella_phage	87.3	6.6e-143
VEC38177.1|42642_43074_-	Uncharacterized conserved protein	NA	J9Q6I8	Salmonella_phage	91.6	1.1e-65
VEC38179.1|43953_44397_-	Uncharacterised protein	NA	J9Q7S4	Salmonella_phage	95.0	1.1e-68
VEC38182.1|44393_45563_-	DNA polymerase III subunit alpha	NA	J9Q7Z2	Salmonella_phage	94.1	7.3e-210
VEC38184.1|45583_46279_-	NUMOD4 motif	NA	S5YLC4	Mycobacterium_phage	37.4	1.9e-19
VEC38186.1|46281_48645_-	DNA polymerase III subunit alpha	NA	J9Q7Z2	Salmonella_phage	87.4	0.0e+00
VEC38189.1|48825_50058_-	Aerobic cobaltochelatase CobS subunit	NA	J9Q733	Salmonella_phage	86.6	1.3e-212
VEC38191.1|50154_52434_-	Aerobic cobaltochelatase subunit CobT	NA	J9Q7G6	Salmonella_phage	64.3	3.0e-244
>prophage 3
LR134218	Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 2	107897	56415	107264	107897	tail	Salmonella_phage(89.8%)	50	NA	NA
VEC38205.1|56415_56661_-	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	47.4	5.3e-14
VEC38208.1|56657_57044_-	Uncharacterised protein	NA	Q716B1	Shigella_phage	71.2	1.4e-45
VEC38229.1|57053_57830_-	phosphate starvation-inducible protein PhoH	NA	W8D063	Erwinia_phage	66.1	1.7e-90
VEC38231.1|59139_59439_-	Uncharacterised protein	NA	J9Q7S1	Salmonella_phage	66.3	3.6e-28
VEC38233.1|59435_59588_-	Uncharacterised protein	NA	J9Q7Z1	Salmonella_phage	82.0	1.6e-16
VEC38235.1|59584_59833_-	Uncharacterised protein	NA	J9Q7G5	Salmonella_phage	81.3	9.5e-27
VEC38237.1|59832_60300_-	Uncharacterised protein	NA	J9Q7R9	Salmonella_phage	63.3	9.8e-49
VEC38238.1|60379_61168_-	Uncharacterised protein	NA	J9Q7Z0	Salmonella_phage	49.6	1.4e-68
VEC38240.1|61288_62404_-	DNA primase (bacterial type)	NA	J9Q720	Salmonella_phage	91.3	6.3e-203
VEC38243.1|62557_63898_-	replicative DNA helicase	NA	J9Q7G4	Salmonella_phage	96.2	2.4e-241
VEC38245.1|63962_64688_-	Uncharacterised protein	NA	J9Q7R8	Salmonella_phage	88.8	2.5e-128
VEC38247.1|64881_65640_-	Protein of uncharacterised function (DUF2971)	NA	J9Q7Y9	Salmonella_phage	98.0	1.6e-146
VEC38249.1|65685_66048_-	Uncharacterised protein	NA	J9Q7G3	Salmonella_phage	97.9	1.5e-44
VEC38251.1|66047_66713_-	cobyrinic acid a,c-diamide synthase	NA	J9Q7R7	Salmonella_phage	83.7	2.9e-102
VEC38253.1|66897_67647_-	Uncharacterised protein	NA	J9Q7Y8	Salmonella_phage	31.3	2.7e-16
VEC38255.1|67631_68024_-	Uncharacterised protein	NA	A0A077SLR3	Escherichia_phage	42.2	1.0e-14
VEC38257.1|68298_68490_-	Uncharacterised protein	NA	J9Q7G2	Salmonella_phage	66.7	2.3e-17
VEC38259.1|68440_68692_-	Uncharacterised protein	NA	J9Q7R6	Salmonella_phage	72.3	1.3e-23
VEC38261.1|68694_69387_-	Uncharacterised protein	NA	J9Q7Y7	Salmonella_phage	88.7	2.7e-119
VEC38263.1|69400_69724_-	Uncharacterised protein	NA	J9Q6E7	Salmonella_phage	95.3	2.3e-49
VEC38265.1|69814_70357_-|tail	putative tail fiber	tail	A0A0H4TGH1	Klebsiella_phage	41.9	1.1e-27
VEC38267.1|71312_83483_-|tail	Phage tail fiber protein	tail	J9Q713	Salmonella_phage	59.8	2.2e-30
VEC38270.1|83499_84111_-|tail	lambda tail assembly I	tail	J9Q7F8	Salmonella_phage	73.9	4.5e-78
VEC38272.1|84098_84896_-	gp19	NA	J9Q7R4	Salmonella_phage	85.3	5.4e-140
VEC38274.1|84888_85587_-	gp18	NA	J9Q7Y5	Salmonella_phage	87.4	1.2e-122
VEC38276.1|85673_86009_-|tail	phage minor tail family protein	tail	J9Q6E1	Salmonella_phage	84.5	3.4e-51
VEC38278.1|86052_90585_-	tape measure domain	NA	J9Q712	Salmonella_phage	71.8	0.0e+00
VEC38280.1|90592_90826_-	Uncharacterised protein	NA	J9Q7F7	Salmonella_phage	93.5	3.4e-34
VEC38282.1|90942_91260_-	Uncharacterised protein	NA	J9Q7R3	Salmonella_phage	93.3	1.8e-46
VEC38284.1|91321_92068_-	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	83.0	3.7e-106
VEC38286.1|92135_92528_-	Uncharacterised protein	NA	J9Q6D8	Salmonella_phage	69.8	1.4e-48
VEC38287.1|92529_93003_-	Uncharacterised protein	NA	J9Q711	Salmonella_phage	93.0	2.8e-75
VEC38289.1|92993_93338_-	Uncharacterised protein	NA	J9Q7F6	Salmonella_phage	92.1	2.2e-53
VEC38291.1|93435_94269_-	Uncharacterised protein	NA	J9Q7R2	Salmonella_phage	83.4	4.8e-131
VEC38293.1|94268_94703_-	Uncharacterised protein	NA	J9Q7Y3	Salmonella_phage	84.0	2.9e-63
VEC38295.1|95256_96135_-	Uncharacterised protein	NA	J9Q710	Salmonella_phage	94.2	4.7e-153
VEC38297.1|96161_97061_-	Uncharacterised protein	NA	J9Q7F4	Salmonella_phage	82.6	6.1e-124
VEC38299.1|97104_98658_-	Uncharacterised protein	NA	J9Q7R1	Salmonella_phage	88.8	3.6e-273
VEC38301.1|98690_99947_-	Terminase-like family.	NA	J9Q7Y2	Salmonella_phage	97.4	9.4e-248
VEC38303.1|99949_100591_-	Uncharacterised protein	NA	J9Q6D4	Salmonella_phage	88.2	5.0e-96
VEC38305.1|100766_101033_-	Uncharacterised protein	NA	J9Q757	Salmonella_phage	90.9	1.3e-37
VEC38307.1|101042_101933_-	Uncharacterised protein	NA	J9Q7I6	Salmonella_phage	96.6	1.6e-164
VEC38309.1|101938_102193_-	Uncharacterised protein	NA	J9Q7U0	Salmonella_phage	95.2	7.7e-40
VEC38311.1|102185_102824_-	ABC transporter-like protein	NA	J9Q807	Salmonella_phage	97.2	3.9e-109
VEC38313.1|102820_103489_-	nuclease	NA	J9Q6L1	Salmonella_phage	91.4	1.9e-106
VEC38315.1|103488_104193_-	Probable chromosome-partitioning protein parB	NA	J9Q756	Salmonella_phage	89.4	7.4e-109
VEC38317.1|104252_105812_+	Excinuclease ABC subunit B	NA	J9Q7I4	Salmonella_phage	93.1	5.2e-280
VEC38319.1|105814_106090_+	Uncharacterised protein	NA	J9Q7T9	Salmonella_phage	68.1	3.1e-26
VEC38321.1|106140_106260_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38323.1|106733_107264_+	Repressor of phase-1 flagellin	NA	J9Q6L0	Salmonella_phage	84.5	1.2e-71
>prophage 1
LR134219	Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 3	190626	20215	65705	190626	transposase,protease,integrase	Stx2-converting_phage(25.0%)	40	12223:12235	26658:26670
12223:12235	attL	GAAAAACGCCCTG	NA	NA	NA	NA
VEC38421.1|20215_21019_-|integrase	integrase	integrase	U5P429	Shigella_phage	54.2	8.3e-80
VEC38423.1|21066_21351_-|transposase	transposase	transposase	U5P4I9	Shigella_phage	47.1	4.7e-14
VEC38425.1|22437_22713_+	Protein of uncharacterised function (DUF2946)	NA	NA	NA	NA	NA
VEC38427.1|22795_23506_+	TonB-dependent copper receptor	NA	NA	NA	NA	NA
VEC38429.1|23469_24858_+	colicin I receptor	NA	NA	NA	NA	NA
VEC38431.1|24914_25175_+	protein YnaJ	NA	NA	NA	NA	NA
VEC38433.1|25792_26059_+|transposase	IS1 transposase orfB	transposase	U5P0U6	Shigella_phage	98.9	3.5e-43
VEC38435.1|26279_27533_-	galactoside permease	NA	NA	NA	NA	NA
26658:26670	attR	CAGGGCGTTTTTC	NA	NA	NA	NA
VEC38437.1|27584_30659_-	beta-D-galactosidase	NA	L0N6M2	Herpes_simplex_virus	96.7	0.0e+00
VEC38439.1|30780_31929_-	lac repressor	NA	C6ZCU4	Enterobacteria_phage	95.8	1.4e-184
VEC38441.1|32322_33333_+	NADPH:quinone reductase and related Zn-dependent oxidoreductases	NA	NA	NA	NA	NA
VEC38443.1|34069_34237_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38445.1|34284_34578_-	Transposase and inactivated derivatives	NA	A0A0P0ZDM8	Stx2-converting_phage	96.9	2.7e-49
VEC38447.1|34676_35444_-	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	NA	G3M9Y6	Bacillus_virus	25.2	9.8e-14
VEC38449.1|35444_36401_-	ABC-type Fe3+-siderophore transport system, permease component	NA	NA	NA	NA	NA
VEC38451.1|36397_37396_-	ABC-type Fe3+-siderophore transport system, permease component	NA	NA	NA	NA	NA
VEC38453.1|37392_38295_-	ABC-type Fe3+-citrate transport system, periplasmic component	NA	NA	NA	NA	NA
VEC38455.1|38339_40664_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
VEC38457.1|40756_41710_-	FecR anti-FecI sigma factor	NA	NA	NA	NA	NA
VEC38459.1|41706_42228_-	RNA polymerase sigma factor, sigma-70 family	NA	NA	NA	NA	NA
VEC38461.1|42703_43159_-	Transposase and inactivated derivatives	NA	U5N3F9	Enterobacteria_phage	89.2	1.5e-73
VEC38463.1|43783_44911_+	substrate-binding periplasmic transport protein	NA	NA	NA	NA	NA
VEC38465.1|44907_45501_+	Response regulator of citrate/malate metabolism	NA	NA	NA	NA	NA
VEC38467.1|45497_46346_+	ABC transporter	NA	NA	NA	NA	NA
VEC38469.1|46345_47266_+	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
VEC38471.1|47275_48883_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
VEC38473.1|48927_49875_+	Acetamidase	NA	A0A1V0S8X7	Catovirus	22.7	9.6e-11
VEC38475.1|49882_51616_+	Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)	NA	G9BWD6	Planktothrix_phage	29.6	6.9e-15
VEC38477.1|53437_53785_-	Transposase and inactivated derivatives	NA	A0A0P0ZEB3	Stx2-converting_phage	98.3	2.6e-62
VEC38479.1|53852_54473_-	Transposase and inactivated derivatives	NA	A0A0P0ZEB3	Stx2-converting_phage	91.7	7.2e-108
VEC38481.1|54415_55390_-	Transposase and inactivated derivatives	NA	A0A0P0ZBS5	Stx2-converting_phage	91.8	2.7e-149
VEC38483.1|55439_55787_-	Transposase and inactivated derivatives	NA	A0A0P0ZDM8	Stx2-converting_phage	96.5	4.1e-60
VEC38485.1|56717_57353_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA	NA
VEC38487.1|57349_58462_-	radical SAM protein	NA	S5WIP3	Leptospira_phage	33.8	1.5e-47
VEC38489.1|58454_59843_-	radical SAM protein	NA	S5VT21	Leptospira_phage	29.0	6.3e-51
VEC38491.1|60591_60912_+|transposase	IS2 transposase orfA	transposase	Q76S41	Shigella_phage	96.6	4.8e-39
VEC38493.1|61723_62719_-	Transposase	NA	A0A1S7J231	Thermus_phage	28.3	7.0e-20
VEC38495.1|62949_63339_+|transposase	putative transposase	transposase	A0A077K814	Ralstonia_phage	54.9	4.3e-26
VEC38497.1|63563_64715_-|protease	serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.3	7.5e-26
VEC38499.1|64943_65705_-|protease	Zn-dependent protease with chaperone function	protease	NA	NA	NA	NA
>prophage 2
LR134219	Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 3	190626	73059	123625	190626	transposase,protease,holin	Bacillus_phage(25.0%)	56	NA	NA
VEC38518.1|73059_73551_-|protease	ATP-dependent metalloprotease FtsH	protease	NA	NA	NA	NA
VEC38520.1|73611_73782_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38522.1|73781_76631_-	ATPase	NA	K4FB40	Cronobacter_phage	41.1	2.6e-128
VEC38524.1|76736_77306_-	heat shock protein Hsp20	NA	NA	NA	NA	NA
VEC38526.1|77340_77622_-	DNA binding domain, excisionase family	NA	NA	NA	NA	NA
VEC38528.1|77721_78237_+	Transposase	NA	NA	NA	NA	NA
VEC38530.1|78283_79207_+|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	95.8	1.5e-170
VEC38532.1|79328_80861_+	Transposase and inactivated derivatives	NA	A0A1B1P773	Bacillus_phage	39.8	3.1e-51
VEC38534.1|81019_81502_-	acetyltransferase	NA	NA	NA	NA	NA
VEC38536.1|81489_81756_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEC38538.1|81992_82184_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38540.1|82259_82517_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38542.1|82565_82769_-	gene expression modulator	NA	NA	NA	NA	NA
VEC38544.1|82802_83171_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38545.1|83214_83709_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38547.1|83739_84315_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38549.1|84302_84572_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEC38551.1|84929_85280_+	ArsR family transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	1.4e-23
VEC38553.1|85329_85692_+	arsenical resistance operon trans-acting repressor ArsD	NA	NA	NA	NA	NA
VEC38555.1|85709_87461_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VEC38557.1|87508_88798_+	Arsenical pump membrane protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.0	1.9e-171
VEC38559.1|88810_89236_+	Arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	72.9	2.3e-52
VEC38561.1|89268_89805_-	phosphinothricin N-acetyltransferase	NA	NA	NA	NA	NA
VEC38563.1|89926_90400_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VEC38565.1|90342_91683_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
VEC38567.1|91701_92064_-	arsenical resistance operon trans-acting repressor	NA	NA	NA	NA	NA
VEC38569.1|92139_92685_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
VEC38571.1|92693_93407_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	77.0	2.9e-92
VEC38573.1|93403_93730_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
VEC38575.1|94608_95013_-	Aquaporin Z 2	NA	NA	NA	NA	NA
VEC38577.1|95179_95995_+	Transposase and inactivated derivatives	NA	A9YX10	Burkholderia_phage	25.9	1.7e-11
VEC38579.1|96667_97102_-	copper-binding protein pcoE	NA	NA	NA	NA	NA
VEC38581.1|97318_98719_-	two-component system, OmpR family, heavy metal sensor histidine kinase CusS	NA	W8CYF6	Bacillus_phage	26.3	4.1e-18
VEC38583.1|98715_99396_-	two component heavy metal response transcriptional regulator	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
VEC38585.1|99450_100380_-	copper resistance protein D	NA	NA	NA	NA	NA
VEC38587.1|100384_100765_-	copper resistance protein C	NA	NA	NA	NA	NA
VEC38589.1|100804_101701_-	Uncharacterized protein involved in copper resistance	NA	NA	NA	NA	NA
VEC38591.1|101700_103518_-	copper-resistance protein, CopA family	NA	NA	NA	NA	NA
VEC38593.1|103751_104201_+	copper-binding protein PcoE	NA	NA	NA	NA	NA
VEC38595.1|104490_105168_+	putative peptidase	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	32.5	8.1e-12
VEC38597.1|105262_105460_-	Protein of uncharacterised function (DUF2933).	NA	NA	NA	NA	NA
VEC38599.1|105500_107948_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-84
VEC38601.1|108074_108515_-	Predicted metal-binding protein	NA	NA	NA	NA	NA
VEC38603.1|108601_111748_-	cation efflux system protein SilA	NA	S5VTK5	Leptospira_phage	22.5	4.0e-61
VEC38605.1|111758_113051_-	copper/silver efflux system membrane fusion protein CusB	NA	NA	NA	NA	NA
VEC38607.1|113164_113518_-	copper/silver efflux system protein CusF	NA	NA	NA	NA	NA
VEC38610.1|113546_114932_-	Copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA	NA
VEC38612.1|115121_115802_+	transcriptional regulatory protein CusR	NA	W8CYM9	Bacillus_phage	35.6	2.1e-31
VEC38614.1|115794_117270_+	sensor kinase CusS	NA	W8CYF6	Bacillus_phage	30.1	1.0e-27
VEC38616.1|117520_117952_+	silver binding protein SilE	NA	NA	NA	NA	NA
VEC38618.1|118247_118652_-|transposase	transposase	transposase	NA	NA	NA	NA
VEC38620.1|118805_119099_-|transposase	IS1 transposase orfB	transposase	U5P0U6	Shigella_phage	91.8	7.0e-45
VEC38622.1|119353_119749_+|transposase	IS2 transposase orfA	transposase	Q76S41	Shigella_phage	75.4	1.4e-43
VEC38624.1|119706_120588_+|transposase	putative transposase	transposase	Q9ZXG3	Shigella_phage	63.2	1.2e-100
VEC38627.1|121182_121476_+|transposase	IS1 transposase orfB	transposase	U5P0U6	Shigella_phage	91.8	3.1e-45
VEC38629.1|121627_123625_+|holin	choline/carnitine/betaine transporter	holin	A0A2I7QNT1	Vibrio_phage	25.9	9.7e-21
