assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636005.1_38389_A01	LR134209	Escherichia coli strain NCTC11476 genome assembly, chromosome: 1	1	1020312-1021926	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	25,26,26	26	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|121aa|up_3|LR134209.1_1017208_1017571_-,NA	NA|745aa|up_9|LR134209.1_1010144_1012379_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|LR134209.1_1012456_1012705_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|LR134209.1_1012704_1013040_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|LR134209.1_1013110_1013902_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|LR134209.1_1014129_1015767_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|LR134209.1_1015854_1017153_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|LR134209.1_1017208_1017571_-	NA	NA|302aa|up_2|LR134209.1_1017606_1018512_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|LR134209.1_1018525_1019128_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|LR134209.1_1019300_1019972_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|174aa|down_0|LR134209.1_1022564_1023086_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|down_1|LR134209.1_1023158_1023524_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134209.1_1023839_1025639_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134209.1_1025638_1027351_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134209.1_1027424_1028159_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|down_5|LR134209.1_1028769_1031469_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_6|LR134209.1_1031566_1033129_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|down_7|LR134209.1_1033125_1033665_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_8|LR134209.1_1033676_1034732_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|LR134209.1_1034742_1035489_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCA_900636005.1_38389_A01	LR134209	Escherichia coli strain NCTC11476 genome assembly, chromosome: 1	2	1037428-1038126	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|571aa|up_9|LR134209.1_1025638_1027351_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134209.1_1027424_1028159_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|up_7|LR134209.1_1028769_1031469_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|LR134209.1_1031566_1033129_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|LR134209.1_1033125_1033665_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LR134209.1_1033676_1034732_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134209.1_1034742_1035489_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134209.1_1035470_1036121_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134209.1_1036117_1037041_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134209.1_1037037_1037331_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134209.1_1038207_1039245_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134209.1_1039496_1040405_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134209.1_1040406_1041834_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134209.1_1041833_1042439_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134209.1_1042488_1042812_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134209.1_1043005_1043317_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134209.1_1043335_1044046_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134209.1_1044045_1044525_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134209.1_1044521_1045571_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134209.1_1045551_1046313_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636005.1_38389_A01	LR134209	Escherichia coli strain NCTC11476 genome assembly, chromosome: 1	3	1086141-1086284	3	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GGATAAGACGCGCCAGCGTCGCATCCGACATTTTGGGCACAGTAGC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|258aa|up_7|LR134209.1_1076165_1076939_+,NA	NA|137aa|up_9|LR134209.1_1075267_1075678_+	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|157aa|up_8|LR134209.1_1075670_1076141_+	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|258aa|up_7|LR134209.1_1076165_1076939_+	NA	NA|140aa|up_6|LR134209.1_1077009_1077429_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|327aa|up_5|LR134209.1_1077673_1078654_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|475aa|up_4|LR134209.1_1078821_1080246_-	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|486aa|up_3|LR134209.1_1080254_1081712_-	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional	NA|338aa|up_2|LR134209.1_1081968_1082982_+	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	NA|176aa|up_1|LR134209.1_1083130_1083658_+	PRK10330, PRK10330, electron transport protein HydN	NA|751aa|up_0|LR134209.1_1083810_1086063_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|378aa|down_0|LR134209.1_1086288_1087422_-	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|480aa|down_1|LR134209.1_1087418_1088858_-	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|505aa|down_2|LR134209.1_1089044_1090559_+	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|322aa|down_3|LR134209.1_1090555_1091521_-	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ	NA|258aa|down_4|LR134209.1_1091513_1092287_-	PRK10434, srlR, DNA-binding transcriptional repressor	NA|120aa|down_5|LR134209.1_1092353_1092713_-	PRK10234, PRK10234, transcriptional regulator GutM	NA|260aa|down_6|LR134209.1_1092817_1093597_-	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|124aa|down_7|LR134209.1_1093600_1093972_-	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA	NA|320aa|down_8|LR134209.1_1093982_1094942_-	TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC component	NA|188aa|down_9|LR134209.1_1094938_1095502_-	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component
GCA_900636005.1_38389_A01	LR134209	Escherichia coli strain NCTC11476 genome assembly, chromosome: 1	4	2232380-2232503	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|79aa|up_9|LR134209.1_2221286_2221523_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134209.1_2221833_2223246_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134209.1_2223802_2224012_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134209.1_2224467_2225094_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134209.1_2225114_2227217_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134209.1_2227229_2227868_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134209.1_2227931_2228600_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134209.1_2228596_2229382_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134209.1_2229433_2230198_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134209.1_2230209_2231814_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134209.1_2232817_2234074_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134209.1_2234114_2235488_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134209.1_2235702_2236344_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134209.1_2236383_2237532_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134209.1_2237822_2239034_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134209.1_2239146_2240079_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134209.1_2240075_2241101_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134209.1_2241654_2242824_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134209.1_2242969_2243551_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134209.1_2243678_2244494_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636005.1_38389_A01	LR134209	Escherichia coli strain NCTC11476 genome assembly, chromosome: 1	6	3228035-3228179	6	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|171aa|up_9|LR134209.1_3215399_3215912_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|303aa|up_8|LR134209.1_3217319_3218228_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|LR134209.1_3218419_3220441_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|LR134209.1_3221019_3221697_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|LR134209.1_3221689_3222445_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|LR134209.1_3222431_3223586_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|LR134209.1_3223582_3224623_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|LR134209.1_3224709_3225999_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|LR134209.1_3226057_3226534_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|LR134209.1_3226685_3227969_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134209.1_3228202_3230464_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134209.1_3230646_3232080_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134209.1_3232155_3233208_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134209.1_3233391_3234345_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134209.1_3234385_3235381_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134209.1_3235535_3236354_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134209.1_3236354_3237413_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134209.1_3237415_3238105_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134209.1_3238104_3238878_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134209.1_3239044_3239194_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900636005.1_38389_A01	LR134209	Escherichia coli strain NCTC11476 genome assembly, chromosome: 1	7	3467800-3467896	7	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|LR134209.1_3459585_3460278_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134209.1_3460497_3461040_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|LR134209.1_3461520_3462387_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134209.1_3462388_3462601_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134209.1_3462708_3463230_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134209.1_3463265_3464651_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134209.1_3464824_3465319_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134209.1_3465321_3466044_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134209.1_3466161_3466671_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134209.1_3466667_3467735_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134209.1_3467929_3468823_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134209.1_3468819_3469635_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134209.1_3469645_3470905_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134209.1_3470914_3472582_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134209.1_3472898_3473948_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134209.1_3473969_3475205_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134209.1_3475215_3476001_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|LR134209.1_3476129_3477275_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134209.1_3477296_3478598_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134209.1_3478654_3480016_-	PRK08044, PRK08044, allantoinase AllB
