assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635955.1_36672_A01	LR134201	Cedecea lapagei strain NCTC11466 genome assembly, chromosome: 1	1	1465287-1465363	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Orphan	CCCTCTCCCTAAAAGGGAGAGGGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA|194aa|up_8|LR134201.1_1457298_1457880_+,NA	NA|442aa|up_9|LR134201.1_1455637_1456963_-	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|194aa|up_8|LR134201.1_1457298_1457880_+	NA	NA|128aa|up_7|LR134201.1_1457976_1458360_+	PRK12302, bssR, biofilm formation regulator BssR	NA|373aa|up_6|LR134201.1_1458474_1459593_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|209aa|up_5|LR134201.1_1459584_1460211_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|402aa|up_4|LR134201.1_1460460_1461666_+	PRK10001, PRK10001, serine-type D-Ala-D-Ala carboxypeptidase	NA|255aa|up_3|LR134201.1_1461669_1462434_-	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional	NA|203aa|up_2|LR134201.1_1462514_1463123_-	PRK11837, PRK11837, undecaprenyl pyrophosphate phosphatase; Provisional	NA|236aa|up_1|LR134201.1_1463138_1463846_-	COG3907, COG3907, PAP2 (acid phosphatase) superfamily protein [General function prediction only]	NA|411aa|up_0|LR134201.1_1464036_1465269_+	PRK15402, PRK15402, MdfA family multidrug efflux MFS transporter	NA|679aa|down_0|LR134201.1_1465364_1467401_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|371aa|down_1|LR134201.1_1467562_1468675_+	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC	NA|142aa|down_2|LR134201.1_1468727_1469153_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|158aa|down_3|LR134201.1_1469321_1469795_+	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown]	NA|304aa|down_4|LR134201.1_1469867_1470779_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|334aa|down_5|LR134201.1_1470867_1471869_+	cd19148, AKR_AKR11B1, Bacillus subtilis aldo-keto reductase YhdN and similar proteins	NA|408aa|down_6|LR134201.1_1471941_1473165_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|139aa|down_7|LR134201.1_1473175_1473592_+	pfam03928, Haem_degrading, Haem-degrading	NA|712aa|down_8|LR134201.1_1473710_1475846_-	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|377aa|down_9|LR134201.1_1476010_1477141_-	cd01139, TroA_f, Periplasmic binding protein TroA_f
GCA_900635955.1_36672_A01	LR134201	Cedecea lapagei strain NCTC11466 genome assembly, chromosome: 1	2	3400806-3401975	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	19,19,18	19	TypeI-F	csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA,NA	NA|153aa|up_9|LR134201.1_3393947_3394406_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|382aa|up_8|LR134201.1_3394366_3395512_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|295aa|up_7|LR134201.1_3395523_3396408_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|217aa|up_6|LR134201.1_3396400_3397051_+	PRK10179, PRK10179, formate dehydrogenase-N subunit gamma; Provisional	NA|87aa|up_5|LR134201.1_3397259_3397520_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_4|LR134201.1_3397548_3398316_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|89aa|up_3|LR134201.1_3398406_3398673_+	pfam10048, DUF2282, Predicted integral membrane protein (DUF2282)	NA|279aa|up_2|LR134201.1_3398689_3399526_+	PRK05409, PRK05409, hypothetical protein; Provisional	NA|255aa|up_1|LR134201.1_3399522_3400287_+	pfam09836, DUF2063, Putative DNA-binding domain	NA|156aa|up_0|LR134201.1_3400288_3400756_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	cas6f|185aa|down_0|LR134201.1_3402414_3402969_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|332aa|down_1|LR134201.1_3402979_3403975_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|311aa|down_2|LR134201.1_3403986_3404919_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|440aa|down_3|LR134201.1_3404911_3406231_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3-cas2|1081aa|down_4|LR134201.1_3406626_3409869_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|324aa|down_5|LR134201.1_3409865_3410837_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|552aa|down_6|LR134201.1_3411679_3413335_+	PRK10420, PRK10420, L-lactate permease; Provisional	NA|263aa|down_7|LR134201.1_3413331_3414120_+	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional	NA|381aa|down_8|LR134201.1_3414116_3415259_+	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|101aa|down_9|LR134201.1_3415266_3415569_-	COG3636, COG3636, Predicted transcriptional regulator [Transcription]
GCA_900635955.1_36672_A01	LR134201	Cedecea lapagei strain NCTC11466 genome assembly, chromosome: 1	3	3410994-3411143	3,2	CRISPRCasFinder,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Type I-F	TTTCTAAGCTGCCTGCACGGCAGTGAAC,AGTTTCTAAGCTGCCTGCACGGCAGTGAACTG	28,32	0	0	NA	NA	I-F:I-F	2,2	2	TypeI-F	csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA,NA|33aa|down_7|LR134201.1_3418192_3418291_-	NA|89aa|up_9|LR134201.1_3398406_3398673_+	pfam10048, DUF2282, Predicted integral membrane protein (DUF2282)	NA|279aa|up_8|LR134201.1_3398689_3399526_+	PRK05409, PRK05409, hypothetical protein; Provisional	NA|255aa|up_7|LR134201.1_3399522_3400287_+	pfam09836, DUF2063, Putative DNA-binding domain	NA|156aa|up_6|LR134201.1_3400288_3400756_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	cas6f|185aa|up_5|LR134201.1_3402414_3402969_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|332aa|up_4|LR134201.1_3402979_3403975_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|311aa|up_3|LR134201.1_3403986_3404919_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|440aa|up_2|LR134201.1_3404911_3406231_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3-cas2|1081aa|up_1|LR134201.1_3406626_3409869_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|324aa|up_0|LR134201.1_3409865_3410837_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|552aa|down_0|LR134201.1_3411679_3413335_+	PRK10420, PRK10420, L-lactate permease; Provisional	NA|263aa|down_1|LR134201.1_3413331_3414120_+	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional	NA|381aa|down_2|LR134201.1_3414116_3415259_+	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|101aa|down_3|LR134201.1_3415266_3415569_-	COG3636, COG3636, Predicted transcriptional regulator [Transcription]	NA|110aa|down_4|LR134201.1_3415558_3415888_-	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein	NA|99aa|down_5|LR134201.1_3416095_3416392_-	PRK08178, PRK08178, acetolactate synthase 1 small subunit	NA|563aa|down_6|LR134201.1_3416395_3418084_-	PRK08155, PRK08155, acetolactate synthase large subunit	NA|33aa|down_7|LR134201.1_3418192_3418291_-	NA	NA|66aa|down_8|LR134201.1_3418423_3418621_-	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|702aa|down_9|LR134201.1_3418784_3420890_-	PRK15015, PRK15015, carbon starvation protein CstA
GCA_900635955.1_36672_A01	LR134201	Cedecea lapagei strain NCTC11466 genome assembly, chromosome: 1	5	4189766-4189964	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Orphan	CTCATCCCTGAGGTTCACCCCTTCGGGGCCAGCGTAAACGCTGTTCAAA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA,NA|68aa|down_0|LR134201.1_4190097_4190301_-,NA|154aa|down_1|LR134201.1_4190297_4190759_-,NA|435aa|down_2|LR134201.1_4191154_4192459_-,NA|430aa|down_3|LR134201.1_4192688_4193978_-,NA|197aa|down_8|LR134201.1_4198747_4199338_-,NA|219aa|down_9|LR134201.1_4199370_4200027_-	NA|343aa|up_9|LR134201.1_4179404_4180433_+	TIGR03821, EFP_modif_epmB, EF-P beta-lysylation protein EpmB	NA|118aa|up_8|LR134201.1_4180489_4180843_-	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|549aa|up_7|LR134201.1_4180972_4182619_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|98aa|up_6|LR134201.1_4182659_4182953_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|159aa|up_5|LR134201.1_4183089_4183566_-	COG3030, FxsA, Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]	NA|479aa|up_4|LR134201.1_4183910_4185347_+	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|381aa|up_3|LR134201.1_4185621_4186764_+	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|108aa|up_2|LR134201.1_4186851_4187175_+	PRK10645, PRK10645, divalent cation tolerance protein CutA	NA|577aa|up_1|LR134201.1_4187150_4188881_+	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional	NA|192aa|up_0|LR134201.1_4188919_4189495_+	PRK11640, PRK11640, putative transcriptional regulator; Provisional	NA|68aa|down_0|LR134201.1_4190097_4190301_-	NA	NA|154aa|down_1|LR134201.1_4190297_4190759_-	NA	NA|435aa|down_2|LR134201.1_4191154_4192459_-	NA	NA|430aa|down_3|LR134201.1_4192688_4193978_-	NA	NA|525aa|down_4|LR134201.1_4194048_4195623_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|343aa|down_5|LR134201.1_4195630_4196659_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|265aa|down_6|LR134201.1_4196713_4197508_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|247aa|down_7|LR134201.1_4197827_4198568_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|197aa|down_8|LR134201.1_4198747_4199338_-	NA	NA|219aa|down_9|LR134201.1_4199370_4200027_-	NA
