assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635915.1_36340_F01	LR134195	Raoultella planticola strain NCTC13096 genome assembly, chromosome: 1	1	159168-159323	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	Orphan	GGGGGATTCCCGGACACGGCGCCTGATACGCCTGTCCGGCCAGCGGCTGGCAGCG	55	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	NA,NA|75aa|down_1|LR134195.1_160021_160246_+	NA|515aa|up_9|LR134195.1_149458_151003_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|144aa|up_8|LR134195.1_151248_151680_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|84aa|up_7|LR134195.1_151789_152041_+	PRK10638, PRK10638, glutaredoxin 3; Provisional	NA|156aa|up_6|LR134195.1_152099_152567_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|339aa|up_5|LR134195.1_152566_153583_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|274aa|up_4|LR134195.1_153663_154485_+	PRK11132, cysE, serine acetyltransferase; Provisional	NA|158aa|up_3|LR134195.1_154662_155136_-	PRK10358, PRK10358, tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL	NA|395aa|up_2|LR134195.1_155228_156413_-	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|258aa|up_1|LR134195.1_156412_157186_-	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional	NA|552aa|up_0|LR134195.1_157182_158838_-	PRK10420, PRK10420, L-lactate permease; Provisional	NA|121aa|down_0|LR134195.1_159383_159746_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|75aa|down_1|LR134195.1_160021_160246_+	NA	NA|178aa|down_2|LR134195.1_160234_160768_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|down_3|LR134195.1_160830_161979_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|640aa|down_4|LR134195.1_162101_164021_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|119aa|down_5|LR134195.1_164685_165042_+	pfam11742, DUF3302, Protein of unknown function (DUF3302)	NA|379aa|down_6|LR134195.1_165044_166181_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|203aa|down_7|LR134195.1_166562_167171_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|463aa|down_8|LR134195.1_167277_168666_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|614aa|down_9|LR134195.1_168662_170504_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional
GCA_900635915.1_36340_F01	LR134195	Raoultella planticola strain NCTC13096 genome assembly, chromosome: 1	2	2396501-2398688	1,2,1,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	Type I-F	GTGCACTGCCGTACAGGCAGCTTAGAAA,GTGCACTGCCGTACAGGCAGCTTAGAAA,GTGCACTGCCGTACAGGCAGCTTAGAAA,GTGCACTGCCGTACAGGCAGCTTAGAAA,GTGCACTGCCGTACAGGCAGCTTAGAA	28,28,28,28,27	0	0	NA	NA	I-F:I-F:I-F:I-F:I-F	33,36,36,33,33	36	TypeI-F	cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	NA|50aa|up_9|LR134195.1_2389371_2389521_+,NA|43aa|up_6|LR134195.1_2392140_2392269_+,NA|70aa|down_1|LR134195.1_2399446_2399656_+,NA|124aa|down_8|LR134195.1_2409511_2409883_+	NA|50aa|up_9|LR134195.1_2389371_2389521_+	NA	NA|537aa|up_8|LR134195.1_2389530_2391141_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|202aa|up_7|LR134195.1_2391378_2391984_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|43aa|up_6|LR134195.1_2392140_2392269_+	NA	NA|302aa|up_5|LR134195.1_2392228_2393134_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|302aa|up_4|LR134195.1_2393161_2394067_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|106aa|up_3|LR134195.1_2394169_2394487_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|260aa|up_2|LR134195.1_2394479_2395259_+	PRK06523, PRK06523, short chain dehydrogenase; Provisional	NA|158aa|up_1|LR134195.1_2395339_2395813_-	COG5654, COG5654, Uncharacterized conserved protein [Function unknown]	NA|148aa|up_0|LR134195.1_2395809_2396253_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|189aa|down_0|LR134195.1_2398823_2399390_-	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|70aa|down_1|LR134195.1_2399446_2399656_+	NA	cas1|328aa|down_2|LR134195.1_2399984_2400968_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1085aa|down_3|LR134195.1_2400964_2404219_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_4|LR134195.1_2404238_2405546_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|309aa|down_5|LR134195.1_2405542_2406469_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_6|LR134195.1_2406489_2407494_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_7|LR134195.1_2407503_2408058_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|124aa|down_8|LR134195.1_2409511_2409883_+	NA	NA|210aa|down_9|LR134195.1_2410078_2410708_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]
GCA_900635915.1_36340_F01	LR134195	Raoultella planticola strain NCTC13096 genome assembly, chromosome: 1	3	4644800-4644889	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	Orphan	TACGCCTTATCCGGCCTACAGATTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	NA,NA	NA|216aa|up_9|LR134195.1_4633613_4634261_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|172aa|up_8|LR134195.1_4634374_4634890_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|87aa|up_7|LR134195.1_4634876_4635137_-	PRK01381, PRK01381, trp operon repressor	NA|646aa|up_6|LR134195.1_4635356_4637294_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|556aa|up_5|LR134195.1_4637527_4639195_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|411aa|up_4|LR134195.1_4639263_4640496_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|up_3|LR134195.1_4640641_4642024_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|324aa|up_2|LR134195.1_4642034_4643006_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|212aa|up_1|LR134195.1_4643109_4643745_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_0|LR134195.1_4643762_4644779_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|240aa|down_0|LR134195.1_4644946_4645666_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|down_1|LR134195.1_4645769_4646993_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|down_2|LR134195.1_4647045_4648368_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|down_3|LR134195.1_4648524_4649304_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|260aa|down_4|LR134195.1_4649772_4650552_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_5|LR134195.1_4650548_4651622_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_6|LR134195.1_4651872_4652034_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|204aa|down_7|LR134195.1_4652288_4652900_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_8|LR134195.1_4653118_4654708_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|down_9|LR134195.1_4654800_4655478_-	PRK09449, PRK09449, dUMP phosphatase; Provisional
GCA_900635915.1_36340_F01	LR134195	Raoultella planticola strain NCTC13096 genome assembly, chromosome: 1	4	4696579-4696665	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	Orphan	ACCGTAGGCCGGGTAAGCGTAGCGCCACC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	NA,NA	NA|316aa|up_9|LR134195.1_4688034_4688982_+	PRK13970, PRK13970, 4-hydroxyproline epimerase	NA|370aa|up_8|LR134195.1_4688978_4690088_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|88aa|up_7|LR134195.1_4690084_4690348_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|422aa|up_6|LR134195.1_4690328_4691594_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|152aa|up_5|LR134195.1_4691595_4692051_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|211aa|up_4|LR134195.1_4692340_4692973_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|255aa|up_3|LR134195.1_4692969_4693734_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|489aa|up_2|LR134195.1_4693730_4695197_+	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|286aa|up_1|LR134195.1_4695268_4696126_+	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|127aa|up_0|LR134195.1_4696135_4696516_+	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA|268aa|down_0|LR134195.1_4696711_4697515_+	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|266aa|down_1|LR134195.1_4697525_4698323_+	TIGR02311, 24-dihydroxyhept-2-ene-17-dioic_acid_aldolase, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA|453aa|down_2|LR134195.1_4698344_4699703_+	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease	NA|297aa|down_3|LR134195.1_4699712_4700603_+	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA|521aa|down_4|LR134195.1_4700951_4702514_+	TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	NA|171aa|down_5|LR134195.1_4702533_4703046_+	PRK15486, hpaC, 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional	NA|717aa|down_6|LR134195.1_4703380_4705531_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|68aa|down_7|LR134195.1_4705629_4705833_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|319aa|down_8|LR134195.1_4705844_4706801_+	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional	NA|182aa|down_9|LR134195.1_4707279_4707825_+	pfam07437, YfaZ, YfaZ precursor
GCA_900635915.1_36340_F01	LR134195	Raoultella planticola strain NCTC13096 genome assembly, chromosome: 1	5	4843478-4843593	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	Orphan	CAGCGGGATAACCCCCTGGCCCGGGCTACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j	NA,NA	NA|291aa|up_9|LR134195.1_4830717_4831590_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|296aa|up_8|LR134195.1_4831579_4832467_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|275aa|up_7|LR134195.1_4832477_4833302_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|358aa|up_6|LR134195.1_4833307_4834381_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|437aa|up_5|LR134195.1_4834373_4835684_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|253aa|up_4|LR134195.1_4836206_4836965_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|540aa|up_3|LR134195.1_4836969_4838589_-	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|460aa|up_2|LR134195.1_4838601_4839981_-	PRK09669, PRK09669, putative symporter YagG; Provisional	NA|656aa|up_1|LR134195.1_4840340_4842308_-	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase	NA|303aa|up_0|LR134195.1_4842322_4843231_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|300aa|down_0|LR134195.1_4843813_4844713_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|295aa|down_1|LR134195.1_4844736_4845621_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|338aa|down_2|LR134195.1_4845663_4846677_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|647aa|down_3|LR134195.1_4846724_4848665_-	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|638aa|down_4|LR134195.1_4849193_4851107_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|287aa|down_5|LR134195.1_4851257_4852118_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|270aa|down_6|LR134195.1_4852255_4853065_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|502aa|down_7|LR134195.1_4853083_4854589_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|274aa|down_8|LR134195.1_4854941_4855763_+	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism]	NA|501aa|down_9|LR134195.1_4855861_4857364_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)
