The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	275302	317515	2832348	lysis,holin,transposase	Lactococcus_phage(28.57%)	41	NA	NA
VEB63820.1|275302_277057_+|lysis	Autolysis histidine kinase LytS	lysis	Q9EYF3	Enterobacteria_phage	31.5	9.0e-63
VEB63823.1|277059_277800_+|lysis	Autolysis response regulater LytR	lysis	NA	NA	NA	NA
VEB63825.1|277918_278356_+|holin	holin-like protein	holin	NA	NA	NA	NA
VEB63827.1|278348_279050_+	LrgA-associated membrane protein LrgB	NA	NA	NA	NA	NA
VEB63829.1|279390_281682_+	nitric oxide reductase	NA	NA	NA	NA	NA
VEB63831.1|281907_282612_-	Transcriptional regulator, GntR family	NA	NA	NA	NA	NA
VEB63833.1|282760_283552_+	PTS system, N-acetylglucosamine-specific IIA component / PTS system, N-acetylglucosamine-specific IIB component / PTS system, N-acetylglucosamine-specific IIC component	NA	NA	NA	NA	NA
VEB63835.1|283567_285004_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	6.3e-30
VEB63838.1|285498_286260_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
VEB63840.1|286510_287425_-	Ribokinase	NA	NA	NA	NA	NA
VEB63843.1|287452_287857_-	Ribose ABC transport system, high affinity permease RbsD	NA	NA	NA	NA	NA
VEB63845.1|287871_288753_-	sugar transport protein	NA	NA	NA	NA	NA
VEB63847.1|288984_289983_-	ribose operon repressor, putative	NA	NA	NA	NA	NA
VEB63849.1|290363_290756_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63851.1|290883_292260_-	multidrug resistance protein B	NA	NA	NA	NA	NA
VEB63853.1|292493_293486_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
VEB63855.1|293811_294759_+	peptidoglycan hydrolase	NA	V5R8R0	Arthrobacter_phage	42.7	2.0e-16
VEB63857.1|294810_295470_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	4.5e-23
VEB63859.1|295483_296404_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
VEB63861.1|296400_297567_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
VEB63863.1|297634_298357_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63865.1|298382_299159_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63867.1|299489_300392_-	staphyloxanthin biosynthesis protein, putative	NA	NA	NA	NA	NA
VEB63868.1|300630_300924_+	Virulence factor esxA	NA	NA	NA	NA	NA
VEB63870.1|301006_304036_+	Putative secretion accessory protein EsaA/YueB	NA	NA	NA	NA	NA
VEB63873.1|304035_304494_+	Putative secretion system component EssA	NA	NA	NA	NA	NA
VEB63875.1|304465_304708_+	Putative secretion accessory protein EsaB/YukD	NA	NA	NA	NA	NA
VEB63877.1|304720_306055_+	essB	NA	NA	NA	NA	NA
VEB63879.1|306076_308548_+	FtsK/SpoIIIE family protein, putative secretion system component EssC/YukA	NA	V5UPA0	Mycobacterium_phage	32.0	1.4e-16
VEB63881.1|308516_310508_+	DNA translocase FtsK	NA	NA	NA	NA	NA
VEB63883.1|310520_311600_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63885.1|311602_311797_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63887.1|311906_312617_+|transposase	Bacillus transposase protein	transposase	NA	NA	NA	NA
VEB63889.1|312576_313170_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63891.1|313182_313596_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63893.1|313606_314080_+	membrane protein	NA	NA	NA	NA	NA
VEB63895.1|314094_314469_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63897.1|314486_314876_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63899.1|314877_315270_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB63901.1|315500_316268_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
VEB63903.1|316279_317515_-|transposase	transposase	transposase	A0A059NT83	Lactococcus_phage	49.1	3.3e-104
>prophage 2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	727625	735446	2832348		Hokovirus(16.67%)	10	NA	NA
VEB64534.1|727625_728681_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VEB64536.1|728680_729367_-	Response regulator SaeR	NA	NA	NA	NA	NA
VEB64538.1|729341_729815_-	DoxX family protein	NA	NA	NA	NA	NA
VEB64539.1|730157_730598_-	lipoprotein	NA	NA	NA	NA	NA
VEB64541.1|730877_731462_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB64543.1|731560_732274_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	42.7	9.3e-51
VEB64545.1|732277_732697_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
VEB64547.1|732698_733367_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VEB64549.1|733717_734311_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	3.7e-37
VEB64550.1|734294_735446_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 3
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	747419	759686	2832348		uncultured_Caudovirales_phage(50.0%)	11	NA	NA
VEB64569.1|747419_748475_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.8e-21
VEB64571.1|748635_749178_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VEB64573.1|749570_750488_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.4	6.2e-07
VEB64575.1|750757_752263_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VEB64578.1|752600_753101_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
VEB64580.1|753120_753987_-	Integral membrane domain protein	NA	NA	NA	NA	NA
VEB64582.1|754787_755186_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
VEB64584.1|755148_757254_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
VEB64586.1|757373_758345_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
VEB64588.1|758386_758569_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB64590.1|758714_759686_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
>prophage 4
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	810380	819954	2832348	transposase	Lactococcus_phage(50.0%)	9	NA	NA
VEB64678.1|810380_811685_+	enolase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
VEB64680.1|812035_812494_+	membrane spanning protein	NA	NA	NA	NA	NA
VEB64682.1|812560_812794_+	protein translocase subunit	NA	NA	NA	NA	NA
VEB64684.1|812909_813650_+	Carboxylesterase	NA	NA	NA	NA	NA
VEB64686.1|813683_816056_+	3'-to-5' exoribonuclease RNase R	NA	Q0GXV6	Lactococcus_phage	39.0	6.6e-93
VEB64688.1|816077_816542_+	tmRNA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
VEB64690.1|817470_817884_-	putative lipoprotein	NA	H9A0X8	Staphylococcus_phage	42.0	1.8e-09
VEB64692.1|817939_818707_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
VEB64694.1|818718_819954_-|transposase	transposase	transposase	A0A059NT83	Lactococcus_phage	49.1	3.3e-104
>prophage 5
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	935214	979032	2832348	protease,transposase,tRNA	Lactococcus_phage(33.33%)	40	NA	NA
VEB64893.1|935214_935787_+|transposase	putative transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	8.1e-05
VEB64894.1|935812_936802_-|tRNA	Tryptophanyl-tRNA synthetase; proteobacterial type	tRNA	NA	NA	NA	NA
VEB64895.1|937096_937492_+	arsenate reductase family protein	NA	NA	NA	NA	NA
VEB64896.1|937703_938189_+|transposase	IS605/IS200-like transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
VEB64898.1|938604_939324_+	Negative regulator of genetic competence MecA	NA	NA	NA	NA	NA
VEB64899.1|939444_940431_+	Competence protein CoiA	NA	NA	NA	NA	NA
VEB64900.1|940478_942287_+	Oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
VEB64901.1|942746_943553_-	putative dithiol-disulfide isomerase	NA	NA	NA	NA	NA
VEB64903.1|943575_943941_-	bacterial globin-like protein	NA	NA	NA	NA	NA
VEB64904.1|944044_944638_-	Adenylate cyclase	NA	NA	NA	NA	NA
VEB64906.1|944823_945171_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB64907.1|945187_945823_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
VEB64909.1|945839_946649_+	NAD kinase	NA	NA	NA	NA	NA
VEB64911.1|946645_947500_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
VEB64913.1|947520_948906_+	putative divalent cation transport protein	NA	NA	NA	NA	NA
VEB64915.1|948915_950760_+	Na+/H+ antiporter-like protein	NA	NA	NA	NA	NA
VEB64917.1|951037_951808_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
VEB64919.1|952004_953090_-	membrane protein	NA	NA	NA	NA	NA
VEB64920.1|953431_955000_+	Sodium/proton-dependent alanine carrier protein	NA	NA	NA	NA	NA
VEB64922.1|955144_955903_+	Acetyl esterase	NA	NA	NA	NA	NA
VEB64924.1|956096_956606_+	2-5 RNA ligase	NA	NA	NA	NA	NA
VEB64925.1|956718_957909_-	glycolipid permease ltaA	NA	NA	NA	NA	NA
VEB64927.1|957886_959062_-	diglucosyldiacylglycerol synthase (LTA membrane anchor synthesis)	NA	NA	NA	NA	NA
VEB64929.1|959494_960979_+	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
VEB64931.1|960968_961220_+	yueH-like family protein	NA	NA	NA	NA	NA
VEB64932.1|961219_962782_+	Peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
VEB64934.1|963083_963887_+	Tellurite resistance protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
VEB64935.1|964120_966430_+|protease	protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
VEB64937.1|966446_967805_+	KtrB	NA	NA	NA	NA	NA
VEB64939.1|967940_969455_+	2,3-cyclic-nucleotide 2-phosphodiesterase	NA	NA	NA	NA	NA
VEB64941.1|969943_970513_-	Competence transcription factor	NA	NA	NA	NA	NA
VEB64943.1|970722_970941_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEB64944.1|971021_972008_-	Lipoate-protein ligase A	NA	NA	NA	NA	NA
VEB64946.1|972206_972383_+	putative DUF2187-containing protein	NA	NA	NA	NA	NA
VEB64948.1|972397_973000_+|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
VEB64949.1|974259_976224_+	membrane spanning protein	NA	NA	NA	NA	NA
VEB64951.1|976226_976547_+	putative DUF1093-containing protein	NA	NA	NA	NA	NA
VEB64953.1|976543_976900_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.3	5.0e-05
VEB64955.1|977017_978253_+|transposase	transposase	transposase	A0A059NT83	Lactococcus_phage	49.1	3.3e-104
VEB64956.1|978264_979032_+|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
>prophage 6
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	1010403	1018876	2832348		Synechococcus_phage(33.33%)	9	NA	NA
VEB65009.1|1010403_1010886_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	4.0e-21
VEB65011.1|1010872_1011997_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
VEB65013.1|1012000_1012705_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	6.2e-47
VEB65015.1|1012704_1012968_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VEB65017.1|1012969_1013641_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VEB65019.1|1013633_1015823_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
VEB65020.1|1015801_1017286_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
VEB65021.1|1017278_1018307_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
VEB65022.1|1018309_1018876_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	5.5e-30
>prophage 7
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	1219204	1329207	2832348	protease,transposase,head,tRNA	Staphylococcus_phage(18.75%)	106	NA	NA
VEB65291.1|1219204_1220491_+|protease	Membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
VEB65292.1|1220510_1222214_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEB65293.1|1222471_1226788_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
VEB65294.1|1227075_1227543_+	Putative cytosolic protein	NA	NA	NA	NA	NA
VEB65296.1|1227563_1228739_+	Transcription termination protein NusA	NA	NA	NA	NA	NA
VEB65297.1|1228759_1229044_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA	NA
VEB65298.1|1229040_1229358_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA	NA
VEB65300.1|1229362_1231480_+	protein translation initiation factor 2 (IF-2)	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
VEB65301.1|1231865_1232216_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VEB65302.1|1232384_1233302_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VEB65303.1|1233316_1234288_+	Riboflavin kinase / FMN adenylyltransferase	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
VEB65305.1|1234402_1234672_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
VEB65306.1|1237373_1239047_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
VEB65307.1|1239303_1241673_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.5	1.3e-83
VEB65308.1|1241677_1242391_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEB65310.1|1242421_1243687_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	26.8	5.4e-41
VEB65311.1|1243686_1244973_+	peptidase, M16 family	NA	G3MBJ8	Bacillus_virus	28.4	7.9e-16
VEB65312.1|1244972_1245677_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA	NA
VEB65313.1|1245781_1246609_+	protein with ACT domain	NA	NA	NA	NA	NA
VEB65315.1|1246627_1247020_+	DNA-binding protein	NA	NA	NA	NA	NA
VEB65316.1|1247053_1247632_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
VEB65317.1|1247856_1249008_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
VEB65319.1|1249172_1250216_+	recombinase A	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
VEB65320.1|1250569_1252129_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VEB65321.1|1252382_1253066_-|transposase	putative transposase	transposase	A0ZS58	Staphylococcus_virus	93.8	1.1e-120
VEB65322.1|1253115_1253208_-	Transposase	NA	A0A146ICT8	Staphylococcus_phage	93.1	1.6e-08
VEB65324.1|1253204_1253537_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	92.4	2.2e-26
VEB65325.1|1253873_1254089_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65326.1|1254262_1255060_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
VEB65327.1|1255199_1256960_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
VEB65328.1|1256960_1257827_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
VEB65330.1|1257920_1258214_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEB65331.1|1258347_1259892_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
VEB65332.1|1259892_1260258_+	membrane protein	NA	NA	NA	NA	NA
VEB65333.1|1260284_1260776_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
VEB65334.1|1261078_1263697_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
VEB65335.1|1263709_1265719_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	5.3e-59
VEB65336.1|1265733_1266267_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
VEB65337.1|1266731_1267550_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
VEB65338.1|1267678_1269175_+	glycerol kinase	NA	NA	NA	NA	NA
VEB65339.1|1269332_1271006_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
VEB65340.1|1271152_1272070_+	hydrolase	NA	NA	NA	NA	NA
VEB65341.1|1272087_1273023_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
VEB65342.1|1273037_1273271_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
VEB65343.1|1273492_1273969_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
VEB65344.1|1274080_1275319_+	GTP-binding protein	NA	NA	NA	NA	NA
VEB65345.1|1275337_1276576_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
VEB65346.1|1276819_1277188_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
VEB65348.1|1277206_1278547_+	glutamine synthetase	NA	NA	NA	NA	NA
VEB65349.1|1279821_1279911_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65350.1|1279937_1280150_+	Uncharacterised protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	3.1e-18
VEB65351.1|1280443_1280650_+	Uncharacterised protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
VEB65353.1|1281888_1282074_+	Uncharacterised protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
VEB65354.1|1282585_1282690_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65355.1|1282818_1283070_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65356.1|1283115_1283403_+|head	putative phage head morphogenesis protein	head	A0A1W6JNH6	Staphylococcus_phage	71.7	2.5e-18
VEB65357.1|1283382_1284150_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
VEB65359.1|1284161_1285127_-|transposase	transposase	transposase	A0A059NT83	Lactococcus_phage	51.7	1.3e-76
VEB65360.1|1285083_1285398_-|transposase	transposase	transposase	A0A059NT83	Lactococcus_phage	45.6	2.9e-20
VEB65361.1|1285531_1285903_+|head	putative phage head morphogenesis protein	head	NA	NA	NA	NA
VEB65362.1|1286023_1286272_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65363.1|1286850_1288116_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	28.7	2.3e-28
VEB65365.1|1288270_1288372_+	Phage protein	NA	NA	NA	NA	NA
VEB65366.1|1288417_1288684_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	NA	NA	NA	NA
VEB65367.1|1288692_1288818_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65368.1|1289245_1289536_+	Uncharacterised protein	NA	S6B1L4	Thermus_phage	35.1	5.4e-05
VEB65370.1|1289546_1289741_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65371.1|1289781_1290132_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65372.1|1290138_1290330_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65373.1|1290878_1291904_-	Low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
VEB65375.1|1292173_1292371_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65376.1|1292427_1293909_+	Cardiolipin synthase	NA	NA	NA	NA	NA
VEB65377.1|1294089_1294989_+	putative antibiotic transport system ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	6.7e-22
VEB65378.1|1294957_1295689_+	ABC transporter permease protein	NA	NA	NA	NA	NA
VEB65380.1|1295692_1296784_+	Two-component sensor histidine kinase	NA	NA	NA	NA	NA
VEB65381.1|1296780_1297383_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VEB65382.1|1297495_1297684_-	membrane protein	NA	NA	NA	NA	NA
VEB65383.1|1297822_1298356_+	Thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
VEB65385.1|1298498_1299353_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65386.1|1299674_1300259_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65387.1|1300312_1301035_-	aspartate kinase	NA	NA	NA	NA	NA
VEB65388.1|1301132_1301696_-	aspartate kinase	NA	NA	NA	NA	NA
VEB65389.1|1301886_1303167_+	Homoserine dehydrogenase	NA	NA	NA	NA	NA
VEB65391.1|1303172_1304234_+	Threonine synthase	NA	NA	NA	NA	NA
VEB65392.1|1304235_1305150_+	Homoserine kinase	NA	NA	NA	NA	NA
VEB65394.1|1305207_1306011_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VEB65396.1|1306339_1306654_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65398.1|1306872_1308327_-	gamma-aminobutyrate permease	NA	NA	NA	NA	NA
VEB65400.1|1308530_1310048_+	Catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
VEB65402.1|1310138_1310288_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
VEB65404.1|1310741_1311011_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
VEB65405.1|1311167_1312145_+	putative GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.4	2.3e-185
VEB65407.1|1312319_1313183_+	SCP family extracellular protein	NA	U5Q0C0	Bacillus_phage	41.5	4.1e-16
VEB65408.1|1313237_1313339_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65409.1|1313561_1314185_-|protease	SOS-response repressor and protease LexA	protease	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
VEB65411.1|1314324_1314561_+	putative secreted protein	NA	NA	NA	NA	NA
VEB65413.1|1314696_1314936_+	Putative cytosolic protein	NA	NA	NA	NA	NA
VEB65415.1|1315056_1317045_+	Transketolase	NA	NA	NA	NA	NA
VEB65417.1|1317277_1317565_+	Uncharacterised protein family (UPF0154)	NA	NA	NA	NA	NA
VEB65419.1|1317743_1318211_+	membrane protein	NA	NA	NA	NA	NA
VEB65421.1|1318334_1319456_+	SbcD protein	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
VEB65422.1|1319459_1322489_+	Exonuclease SbcC	NA	NA	NA	NA	NA
VEB65424.1|1322559_1322922_-	Large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
VEB65427.1|1323125_1324772_+	Glycine betaine transporter OpuD	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
VEB65429.1|1325606_1328312_+	Aconitate hydratase	NA	NA	NA	NA	NA
VEB65431.1|1328478_1329207_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	37.3	1.7e-23
>prophage 8
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	1483233	1569168	2832348	tail,head,protease,capsid,transposase,portal,integrase,holin,terminase,tRNA	Staphylococcus_phage(78.21%)	103	1493430:1493447	1569723:1569740
VEB65672.1|1483233_1484526_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
VEB65674.1|1484824_1487542_-	dinG family ATP-dependent helicase YoaA	NA	A0A1X9I5C8	Streptococcus_phage	34.4	3.7e-47
VEB65676.1|1487565_1488537_-	Biotin-protein ligase / Biotin operon repressor	NA	NA	NA	NA	NA
VEB65677.1|1488523_1489726_-	poly A polymerase family protein	NA	H7BUW3	unidentified_phage	43.3	1.9e-35
VEB65679.1|1489730_1490873_-	glycosyl transferase	NA	NA	NA	NA	NA
VEB65681.1|1491110_1491428_-	Pyrophosphohydrolase, MazG family	NA	NA	NA	NA	NA
VEB65683.1|1491764_1492463_-	Neutral zinc metallopeptidase family	NA	NA	NA	NA	NA
VEB65685.1|1492516_1493104_-	membrane protein	NA	NA	NA	NA	NA
VEB65687.1|1493093_1493681_-	Putative cytosolic protein	NA	G3MAV7	Bacillus_virus	26.7	8.0e-08
1493430:1493447	attL	ATTCATTAACTTTATATT	NA	NA	NA	NA
VEB65688.1|1493682_1494927_-	TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase	NA	NA	NA	NA	NA
VEB65689.1|1494933_1496232_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VEB65692.1|1496241_1497306_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
VEB65694.1|1497331_1498498_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	2.0e-34
VEB65696.1|1498884_1499085_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65697.1|1499294_1499744_-	Nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
VEB65699.1|1499835_1500795_-	Farnesyl pyrophosphate synthetase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
VEB65701.1|1500796_1501522_-	Ubiquinone/menaquinone biosynthesis methyltransferase UbiE	NA	NA	NA	NA	NA
VEB65703.1|1501524_1502097_-	heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 family protein	NA	NA	NA	NA	NA
VEB65705.1|1502527_1502800_-	DNA-binding protein II HBsu	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
VEB65707.1|1502970_1503969_-	Glycerol-3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA	NA
VEB65709.1|1503985_1505296_-	GTP-binding protein EngA	NA	NA	NA	NA	NA
VEB65711.1|1505517_1506693_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VEB65713.1|1507404_1508064_-	Cytidylate kinase	NA	NA	NA	NA	NA
VEB65715.1|1508140_1509109_+	L-asparaginase	NA	NA	NA	NA	NA
VEB65716.1|1509241_1510210_-	thioredoxin reductase	NA	NA	NA	NA	NA
VEB65719.1|1510612_1512064_-	elastin binding protein ebpS	NA	NA	NA	NA	NA
VEB65721.1|1512216_1513596_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
VEB65723.1|1513585_1514539_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65725.1|1514646_1514895_+	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
VEB65726.1|1515000_1515546_-	riboflavin transporter	NA	NA	NA	NA	NA
VEB65728.1|1515947_1516835_-	putative lipoprotein	NA	NA	NA	NA	NA
VEB65730.1|1517346_1518195_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VEB65732.1|1518329_1518476_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB65734.1|1518459_1519329_-	lipoprotein	NA	NA	NA	NA	NA
VEB65736.1|1519486_1519834_-	lipoprotein	NA	Q4ZCJ7	Staphylococcus_virus	98.2	1.5e-25
VEB65738.1|1519880_1520891_-	BcgI-like restriction enzyme subunit beta	NA	A0A1W6JNN3	Staphylococcus_phage	41.3	2.7e-64
VEB65740.1|1520877_1522782_-	BcgI-like restriction enzyme subunit alpha	NA	A0A1W6JNK1	Staphylococcus_phage	84.5	0.0e+00
VEB65742.1|1523142_1523898_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
VEB65744.1|1523909_1524164_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VEB65746.1|1524704_1525004_-	hypothetical phage-related protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
VEB65748.1|1525049_1525214_-	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
VEB65749.1|1525206_1525596_-	phage protein	NA	A0A2I6PER1	Staphylococcus_phage	99.2	4.9e-62
VEB65751.1|1525595_1527062_-|tail	putative phage tail protein	tail	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
VEB65753.1|1527061_1528972_-	putative minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
VEB65757.1|1528987_1529278_-	putative gp53	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
VEB65759.1|1529277_1530861_-|tail	prophage endopeptidase tail family protein	tail	A0A2I6PEQ5	Staphylococcus_phage	99.8	3.5e-308
VEB65761.1|1530869_1531694_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	7.8e-158
VEB65763.1|1531693_1537366_-	phage protein	NA	A0A1X9IGU9	Staphylococcus_phage	85.5	0.0e+00
VEB65765.1|1537379_1537538_-	putative gp49	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
VEB65767.1|1537579_1537930_-	putative gp48	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
VEB65769.1|1537987_1538443_-|tail	major tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
VEB65772.1|1538534_1539176_-|tail	major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
VEB65774.1|1539210_1539606_-	phage protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
VEB65776.1|1539606_1540008_-	putative phiSLT protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
VEB65778.1|1540004_1540337_-	phage protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
VEB65780.1|1540348_1540627_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
VEB65782.1|1540695_1541859_-|capsid	putative phage capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	99.7	2.1e-217
VEB65784.1|1541870_1542644_-|protease	phage protease	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
VEB65786.1|1542627_1543866_-|portal	portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
VEB65788.1|1543870_1545562_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	99.8	0.0e+00
VEB65790.1|1545551_1545857_-|terminase	Phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
VEB65792.1|1545985_1546300_-	HNH endonuclease family protein	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
VEB65794.1|1546456_1546894_-	phage regulatory protein	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
VEB65796.1|1546906_1548265_-	putative DNA helicase	NA	A0A1X9IH01	Staphylococcus_phage	99.8	1.8e-260
VEB65798.1|1548254_1548545_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
VEB65800.1|1548885_1551333_-	E family protein	NA	R4WAL1	Staphylococcus_phage	100.0	0.0e+00
VEB65802.1|1551384_1551585_-	putative exported phage protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
VEB65804.1|1551652_1551808_-	transcriptional activator rinB-like protein	NA	A7TWI2	Staphylococcus_phage	94.0	1.5e-17
VEB65807.1|1551804_1552191_-	phage membrane protein	NA	A7TWI1	Staphylococcus_phage	98.4	3.4e-63
VEB65809.1|1552180_1552417_-	phage protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
VEB65811.1|1552441_1552678_-	phage protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
VEB65814.1|1552714_1553242_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A7TWB1	Staphylococcus_phage	100.0	7.8e-95
VEB65816.1|1553234_1553483_-	Phage protein	NA	Q9B0F3	Staphylococcus_virus	97.6	2.7e-37
VEB65818.1|1553497_1553740_-	phage family protein	NA	A0A2D1G5G2	Staphylococcus_phage	97.5	2.8e-39
VEB65820.1|1553754_1553955_-	phage protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
VEB65821.1|1553957_1554215_-	phage protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
VEB65823.1|1554214_1554616_-	putative phi PVL-like protein	NA	A0A2I6PF14	Staphylococcus_phage	98.5	3.6e-68
VEB65825.1|1554615_1554801_-	phage protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
VEB65827.1|1554813_1556775_-	DNA polymerase	NA	Q4ZCP5	Staphylococcus_virus	99.4	0.0e+00
VEB65829.1|1556834_1557389_-	phage protein	NA	M9QRS1	Staphylococcus_phage	100.0	1.4e-99
VEB65831.1|1557414_1558581_-	PD-(D/E)XK nuclease superfamily protein	NA	R4WAL0	Staphylococcus_phage	99.7	7.0e-221
VEB65833.1|1558577_1558940_-	phage protein	NA	Q4ZCP8	Staphylococcus_virus	100.0	2.2e-56
VEB65834.1|1558954_1559278_-	phage protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
VEB65836.1|1559356_1559518_-	phage protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
VEB65838.1|1559530_1559794_-	DNA-binding protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
VEB65841.1|1559818_1560034_-	phage protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
VEB65842.1|1560088_1560454_+	phage protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
VEB65844.1|1560422_1560668_-	phage protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
VEB65846.1|1560734_1561115_+	phage protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
VEB65848.1|1561101_1561299_-	phage protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
VEB65851.1|1561368_1561581_+	putative uracil-DNA glycosylase	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
VEB65853.1|1561621_1561771_-	phage protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
VEB65856.1|1561785_1562229_-	hypothetical phage-related protein	NA	A7TWF2	Staphylococcus_phage	100.0	8.9e-76
VEB65858.1|1562276_1562489_-	helix-turn-helix family protein	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
VEB65860.1|1562640_1563372_+	helix-turn-helix family protein	NA	S4SVC5	Staphylococcus_phage	99.2	1.3e-132
VEB65862.1|1563442_1563625_+	Putative cytosolic protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
VEB65864.1|1563682_1563808_+	ORF136	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	3.3e-12
VEB65866.1|1563804_1564419_-	phi PVL ORF 30-like protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
VEB65868.1|1564544_1565750_+|integrase	integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
VEB65870.1|1565792_1566482_-	lipoprotein	NA	B5WZK7	Staphylococcus_phage	53.7	1.3e-54
VEB65872.1|1566619_1567012_-	lipoprotein	NA	NA	NA	NA	NA
VEB65874.1|1567153_1567921_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
VEB65876.1|1567932_1569168_-|transposase	transposase	transposase	A0A059NT83	Lactococcus_phage	49.1	3.3e-104
1569723:1569740	attR	ATTCATTAACTTTATATT	NA	NA	NA	NA
>prophage 9
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	1628779	1637109	2832348	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
VEB66005.1|1628779_1629565_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
VEB66007.1|1629690_1630581_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
VEB66009.1|1630590_1631937_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	33.7	9.1e-55
VEB66011.1|1632050_1633151_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
VEB66013.1|1633153_1633831_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VEB66015.1|1633961_1635068_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
VEB66017.1|1635291_1637109_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 10
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	1706555	1715598	2832348	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VEB66154.1|1706555_1707074_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
VEB66156.1|1707095_1709369_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.0	3.1e-63
VEB66158.1|1709571_1711851_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
VEB66160.1|1712125_1712386_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
VEB66161.1|1712404_1713544_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
VEB66163.1|1713566_1714592_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VEB66165.1|1714593_1715598_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	1829507	1944514	2832348	protease,transposase,tRNA	Staphylococcus_phage(74.58%)	112	NA	NA
VEB66336.1|1829507_1830152_-|tRNA	tRNA (guanine46-N7-)-methyltransferase	tRNA	NA	NA	NA	NA
VEB66337.1|1830166_1830958_-	phosphotransferase enzyme family	NA	NA	NA	NA	NA
VEB66338.1|1831508_1832357_-	D-alanine aminotransferase	NA	NA	NA	NA	NA
VEB66340.1|1832360_1833770_-	Xaa-His dipeptidase	NA	NA	NA	NA	NA
VEB66341.1|1833972_1834395_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VEB66342.1|1834411_1835107_-	16S pseudouridine synthase A	NA	NA	NA	NA	NA
VEB66344.1|1835103_1836765_-	spore cortex protein; Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	NA	NA	NA	NA	NA
VEB66345.1|1837170_1838439_+	NAD(FAD)-utilizing dehydrogenase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
VEB66346.1|1838555_1845125_-	putative surface anchored protein	NA	A0A2H4PQU6	Staphylococcus_phage	92.6	1.9e-294
VEB66348.1|1845450_1845762_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
VEB66349.1|1845783_1848201_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
VEB66350.1|1848488_1849670_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
VEB66352.1|1849780_1850734_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
VEB66353.1|1850730_1851294_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	100.0	2.2e-103
VEB66354.1|1851413_1851815_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VEB66356.1|1852251_1853049_-|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	89.5	1.1e-108
VEB66357.1|1853394_1854222_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VEB66359.1|1854455_1855457_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
VEB66360.1|1855578_1856043_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
VEB66361.1|1856055_1857237_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
VEB66363.1|1857247_1857880_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
VEB66364.1|1857886_1858930_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
VEB66365.1|1859410_1860913_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
VEB66366.1|1861439_1861754_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
VEB66368.1|1861753_1863046_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	94.2	7.5e-216
VEB66369.1|1863063_1863459_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	96.9	4.5e-71
VEB66370.1|1864088_1865231_-	quinolone resistance protein NorA	NA	NA	NA	NA	NA
VEB66372.1|1865622_1866087_-	ftsk/spoiiie family protein	NA	NA	NA	NA	NA
VEB66373.1|1866722_1867577_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VEB66374.1|1867852_1868077_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VEB66375.1|1868275_1868746_+	DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	83.9	1.8e-66
VEB66377.1|1868858_1869302_+	comK family protein	NA	NA	NA	NA	NA
VEB66378.1|1869288_1869732_-	membrane protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.2	1.9e-49
VEB66380.1|1870029_1870665_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VEB66381.1|1870831_1871452_+	membrane protein	NA	NA	NA	NA	NA
VEB66382.1|1871848_1872562_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
VEB66384.1|1872820_1873123_+	membrane protein	NA	NA	NA	NA	NA
VEB66385.1|1873378_1873744_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	4.8e-59
VEB66386.1|1873740_1874094_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.9	1.9e-20
VEB66388.1|1874936_1875305_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	94.9	1.2e-33
VEB66389.1|1875301_1875394_+	Transposase	NA	A0A146ICT8	Staphylococcus_phage	93.1	1.6e-08
VEB66390.1|1875443_1875740_+|transposase	transposase (fragment)	transposase	A0A146ICT8	Staphylococcus_phage	100.0	4.1e-53
VEB66392.1|1875815_1876127_+|transposase	putative transposase	transposase	Q9MBP7	Staphylococcus_prophage	94.2	1.4e-48
VEB66393.1|1876189_1877023_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	6.0e-158
VEB66394.1|1877239_1878148_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	2.9e-137
VEB66396.1|1878272_1879466_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	2.2e-217
VEB66397.1|1879836_1881429_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
VEB66398.1|1881806_1882577_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	8.0e-141
VEB66399.1|1882557_1883037_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.1e-84
VEB66401.1|1883096_1883354_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	90.6	2.0e-40
VEB66402.1|1883350_1884352_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.8e-186
VEB66403.1|1884356_1885835_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	1.6e-283
VEB66404.1|1885993_1886476_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.8e-80
VEB66406.1|1887178_1887400_+	excalibur domain protein	NA	A0A2H4PQM8	Staphylococcus_phage	100.0	7.2e-18
VEB66407.1|1887480_1888476_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	95.2	1.9e-70
VEB66408.1|1888551_1889178_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	6.4e-88
VEB66409.1|1889218_1889560_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.9	2.5e-54
VEB66411.1|1889660_1890281_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	89.8	2.4e-18
VEB66412.1|1890260_1891028_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
VEB66414.1|1891039_1892275_-|transposase	transposase	transposase	A0A059NT83	Lactococcus_phage	49.1	3.3e-104
VEB66415.1|1892632_1893202_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	95.0	1.2e-77
VEB66416.1|1893574_1893751_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB66418.1|1893761_1894145_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB66419.1|1894724_1894829_-|transposase	putative transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	87.5	7.2e-05
VEB66420.1|1895636_1896014_-	exported protein	NA	NA	NA	NA	NA
VEB66421.1|1896220_1896661_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VEB66423.1|1896705_1898319_+	pathogenicity island protein	NA	NA	NA	NA	NA
VEB66424.1|1898333_1898633_+	ESAT-6 family protein	NA	NA	NA	NA	NA
VEB66425.1|1898949_1900131_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB66427.1|1900123_1900978_-	SMF family protein	NA	NA	NA	NA	NA
VEB66428.1|1901207_1901678_-	Type I restriction-modification system,specificity subunit S	NA	NA	NA	NA	NA
VEB66429.1|1901802_1902084_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	64.5	6.5e-24
VEB66430.1|1902125_1902932_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.9	1.1e-76
VEB66431.1|1903033_1903609_+	Domain of uncharacterised function DUF1829	NA	NA	NA	NA	NA
VEB66433.1|1904160_1904937_-	extracellular enterotoxin type G precursor	NA	NA	NA	NA	NA
VEB66434.1|1905219_1905975_-	enterotoxin SeN	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
VEB66435.1|1906013_1906784_-	enterotoxin Seu	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.6	6.3e-45
VEB66436.1|1906937_1907666_-	extracellular enterotoxin type I precursor	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
VEB66438.1|1907700_1908420_-	enterotoxin SEM	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
VEB66439.1|1908700_1909465_-	enterotoxin SeO	NA	A0A1X9H080	Staphylococcus_phage	37.1	2.3e-31
VEB66440.1|1910830_1911385_-	Putative hydrolase ydeN	NA	NA	NA	NA	NA
VEB66442.1|1911707_1913108_-	Protoporphyrinogen IX oxidase, aerobic	NA	NA	NA	NA	NA
VEB66443.1|1913131_1914055_-	Ferrochelatase, protoheme ferro-lyase	NA	NA	NA	NA	NA
VEB66444.1|1914112_1915150_-	Uroporphyrinogen III decarboxylase	NA	NA	NA	NA	NA
VEB66445.1|1915411_1915915_+	signal transduction protein	NA	NA	NA	NA	NA
VEB66447.1|1916038_1917262_-	EcsB	NA	NA	NA	NA	NA
VEB66448.1|1917254_1917995_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
VEB66449.1|1918128_1918551_+	adenosine 5'-monophosphoramidase	NA	NA	NA	NA	NA
VEB66450.1|1918692_1919058_+	gas vesicle protein-protein	NA	NA	NA	NA	NA
VEB66452.1|1919790_1920348_+	membrane protein	NA	NA	NA	NA	NA
VEB66453.1|1920552_1921515_+	Foldase protein PrsA precursor	NA	NA	NA	NA	NA
VEB66454.1|1921635_1922577_-	CMP-binding-factor 1	NA	NA	NA	NA	NA
VEB66456.1|1922573_1925510_-	membrane associated protein	NA	NA	NA	NA	NA
VEB66457.1|1925499_1926696_-	DNA repair exonuclease family protein YhaO	NA	NA	NA	NA	NA
VEB66458.1|1927467_1927812_-	putative transcriptional regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
VEB66459.1|1927880_1929005_-	membrane protein	NA	NA	NA	NA	NA
VEB66460.1|1929183_1929648_-	HTH domain protein, binds to mecA promoter region	NA	NA	NA	NA	NA
VEB66462.1|1930003_1930627_-	Two-component response regulator-like protein	NA	NA	NA	NA	NA
VEB66463.1|1930648_1931761_-	Two-component sensor protein	NA	NA	NA	NA	NA
VEB66464.1|1931923_1932745_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
VEB66465.1|1933206_1934592_-	Fumarate hydratase class II	NA	NA	NA	NA	NA
VEB66467.1|1934787_1935183_-	membrane protein	NA	NA	NA	NA	NA
VEB66468.1|1936017_1936170_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VEB66469.1|1936194_1936794_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
VEB66471.1|1936952_1937423_-|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	tRNA	NA	NA	NA	NA
VEB66472.1|1937427_1938555_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
VEB66473.1|1938704_1939433_-	Glutamine transport ATP-binding protein glnQ	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
VEB66474.1|1939419_1940877_-	extracellular glutamine-binding protein	NA	NA	NA	NA	NA
VEB66476.1|1941135_1942197_-	Regulatory protein	NA	NA	NA	NA	NA
VEB66477.1|1942952_1943234_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	64.5	6.5e-24
VEB66478.1|1943275_1944082_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.9	1.1e-76
VEB66479.1|1944061_1944514_-|transposase	transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	2.7e-19
>prophage 12
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	1990502	2090640	2832348	tail,head,protease,capsid,transposase,holin,terminase,tRNA	Staphylococcus_phage(83.72%)	119	NA	NA
VEB66529.1|1990502_1991930_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
VEB66531.1|1991942_1993400_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
VEB66532.1|1993401_1993704_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
VEB66533.1|1994069_1995608_+	Sodium/proline symporter	NA	NA	NA	NA	NA
VEB66534.1|1995696_1996896_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
VEB66536.1|1996908_1998912_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
VEB66537.1|1998915_2001108_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
VEB66538.1|2001104_2001797_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
VEB66540.1|2001968_2002271_-	His repressor	NA	NA	NA	NA	NA
VEB66541.1|2002379_2003675_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
VEB66542.1|2004534_2005701_+	Staphopain A precursor	NA	NA	NA	NA	NA
VEB66544.1|2005731_2006058_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
VEB66545.1|2006644_2006962_+|transposase	truncated transposase for IS1272	transposase	A0A146ICT8	Staphylococcus_phage	100.0	3.5e-50
VEB66546.1|2007118_2007463_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	95.6	1.1e-54
VEB66548.1|2007605_2007779_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB66549.1|2007759_2008362_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
VEB66551.1|2008632_2009454_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	7.9e-70
VEB66552.1|2009446_2010916_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
VEB66553.1|2011099_2012176_+	nitric-oxide synthase	NA	NA	NA	NA	NA
VEB66554.1|2012195_2012990_+	ACT domain protein	NA	NA	NA	NA	NA
VEB66555.1|2013179_2014742_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
VEB66557.1|2014946_2016044_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.3	1.6e-46
VEB66559.1|2016415_2016976_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
VEB66560.1|2017028_2017958_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
VEB66561.1|2018377_2019757_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
VEB66562.1|2019876_2020905_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
VEB66563.1|2021363_2021744_-	penicillinase repressor	NA	NA	NA	NA	NA
VEB66565.1|2021733_2023491_-	Beta-lactamase regulator protein	NA	NA	NA	NA	NA
VEB66566.1|2023597_2024443_+	beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
VEB66567.1|2024756_2025167_+	YolD-like protein	NA	U3PG23	Staphylococcus_phage	54.2	1.4e-30
VEB66569.1|2025195_2025561_-	Transposase FOR transposon Tn554	NA	NA	NA	NA	NA
VEB66571.1|2025569_2027633_-|transposase	transposase B regulatory protein	transposase	NA	NA	NA	NA
VEB66572.1|2027635_2028787_-	Transposase	NA	P97010	Streptococcus_pyogenes_phage	31.0	9.0e-11
VEB66573.1|2029293_2029467_-	exported protein	NA	NA	NA	NA	NA
VEB66575.1|2029845_2030958_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
VEB66576.1|2031014_2031857_-	exported protein	NA	NA	NA	NA	NA
VEB66577.1|2031853_2032411_-	Predicted membrane protein	NA	NA	NA	NA	NA
VEB66578.1|2032470_2032995_-	membrane protein	NA	NA	NA	NA	NA
VEB66580.1|2033115_2033679_+	Thioredoxin	NA	NA	NA	NA	NA
VEB66581.1|2033744_2034485_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
VEB66582.1|2034484_2035357_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
VEB66584.1|2035353_2036034_-	membrane protein	NA	NA	NA	NA	NA
VEB66585.1|2036034_2036931_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	6.5e-17
VEB66586.1|2036927_2037308_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEB66587.1|2037584_2037743_-	membrane protein	NA	NA	NA	NA	NA
VEB66589.1|2038283_2039570_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
VEB66590.1|2039848_2041897_-	MHC class II analog (pseudogene)	NA	NA	NA	NA	NA
VEB66591.1|2042282_2042483_+	beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	98.5	1.0e-26
VEB66593.1|2043657_2044008_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
VEB66594.1|2044692_2045142_+	Chemotaxis-inhibiting protein CHIPS, phage associated	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
VEB66595.1|2045236_2045533_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
VEB66597.1|2046221_2046713_-	Staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	99.4	1.2e-86
VEB66598.1|2046903_2047659_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	99.6	2.2e-151
VEB66599.1|2047670_2047925_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VEB66601.1|2048462_2048693_-	phage protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
VEB66602.1|2048816_2049104_-	phage protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
VEB66603.1|2049150_2049303_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
VEB66605.1|2049292_2053078_-	phage minor structural protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
VEB66606.1|2053093_2054578_-	bacteriophage protein	NA	A0A068A242	Staphylococcus_phage	99.8	2.0e-297
VEB66607.1|2054574_2057436_-|tail	TP901 family phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	98.6	0.0e+00
VEB66608.1|2057488_2059105_-|tail	Phage tail length tape-measure protein	tail	A0A1W6JPL0	Staphylococcus_phage	99.1	1.1e-251
VEB66610.1|2059161_2059299_-	phage protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
VEB66611.1|2059349_2059700_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
VEB66612.1|2060016_2060658_-|tail	phage major tail protein	tail	A0A1W6JPP5	Staphylococcus_phage	100.0	1.1e-119
VEB66613.1|2060658_2061066_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
VEB66615.1|2061298_2061466_-	phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-15
VEB66616.1|2061462_2061825_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
VEB66617.1|2061808_2062093_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
VEB66619.1|2062082_2062367_-|terminase	phage terminase small subunit	terminase	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
VEB66620.1|2062386_2063607_-|capsid	Phage major capsid protein	capsid	A0A075LYD8	Staphylococcus_phage	100.0	7.8e-231
VEB66621.1|2063554_2064292_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
VEB66622.1|2064275_2065439_-	Portal protein, phage associated	NA	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
VEB66624.1|2065454_2067116_-|terminase	Phage terminase large subunit	terminase	Q8LTH3	Staphylococcus_phage	99.8	0.0e+00
VEB66625.1|2067112_2067457_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
VEB66626.1|2067587_2067887_-	phage-associated homing endonuclease	NA	A0A1W6JPL7	Staphylococcus_phage	100.0	2.7e-52
VEB66627.1|2068118_2068535_-	phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
VEB66629.1|2068562_2068763_-	phage protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
VEB66630.1|2068762_2068912_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
VEB66631.1|2068908_2069298_-	phage membrane protein	NA	A0A1W6JPK8	Staphylococcus_phage	100.0	8.9e-64
VEB66632.1|2069287_2069524_-	phage protein	NA	A0A2I6PDD1	Staphylococcus_phage	98.7	4.8e-36
VEB66634.1|2069516_2069804_-	phage protein	NA	Q4ZAB6	Staphylococcus_virus	98.9	2.4e-45
VEB66635.1|2069840_2070374_-	dUTP pyrophosphatase	NA	A0A059T5A7	Staphylococcus_phage	97.2	2.1e-92
VEB66636.1|2070366_2070537_-	phage protein	NA	A7TWH6	Staphylococcus_phage	94.6	2.2e-22
VEB66638.1|2070523_2070778_-	Phage protein	NA	A0A2I6PDI5	Staphylococcus_phage	96.4	2.1e-37
VEB66639.1|2070770_2071055_-	phage protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
VEB66640.1|2071232_2071514_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	64.5	6.5e-24
VEB66642.1|2071555_2072362_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.9	1.1e-76
VEB66643.1|2072358_2072727_-	YopX-family protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	1.1e-60
VEB66645.1|2072723_2072918_-	phage protein	NA	A0A2I6PE33	Staphylococcus_phage	100.0	2.5e-27
VEB66646.1|2072914_2073301_-	phage protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
VEB66647.1|2073314_2073557_-	phage family protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
VEB66649.1|2073560_2073929_-	Phage protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
VEB66650.1|2073941_2074346_-	phage protein	NA	A0A0E3XBN4	Staphylococcus_phage	99.3	4.2e-72
VEB66651.1|2074354_2074573_-	phage protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
VEB66652.1|2074579_2075464_-	Phage protein	NA	S4V6D4	Staphylococcus_phage	95.6	3.1e-136
VEB66654.1|2075493_2075964_-	Single-stranded DNA-binding protein, phage associated	NA	A0A1P8L6D9	Staphylococcus_phage	99.4	9.7e-81
VEB66655.1|2075964_2076450_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	A0A2I6PDI9	Staphylococcus_phage	99.4	2.7e-86
VEB66656.1|2076662_2077583_-	recombinase, phage RecT family protein	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
VEB66658.1|2077584_2079528_-	Uncharacterized conserved protein	NA	I1W619	Staphylococcus_phage	100.0	0.0e+00
VEB66659.1|2079536_2079800_-	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
VEB66660.1|2079808_2080069_-	putative phi PVL-like protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
VEB66661.1|2080162_2080324_-	phage protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
VEB66663.1|2080320_2080641_-	Uncharacterized protein conserved in bacteria	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
VEB66664.1|2080873_2081134_-	putative phi PVL-like protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
VEB66665.1|2081146_2081896_-	putative phage anti-repressor protein	NA	A0A1W6JPN2	Staphylococcus_phage	100.0	2.0e-136
VEB66666.1|2081952_2082162_+	Uncharacterised protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
VEB66667.1|2082154_2082295_-	phage protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
VEB66669.1|2082309_2082756_-	phage protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
VEB66670.1|2082768_2083011_-	phage DNA-binding protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
VEB66671.1|2083174_2083891_+	putative phage repressor protein	NA	A0A1X9H038	Staphylococcus_phage	99.6	1.2e-130
VEB66673.1|2083902_2084757_+	HIRAN domain-containing protein	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
VEB66674.1|2084830_2084977_+	phage protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
VEB66675.1|2084973_2085159_+	phage protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
VEB66677.1|2085229_2085412_+	Putative cytosolic protein	NA	A0A2I6PDR4	Staphylococcus_phage	98.3	3.4e-26
VEB66678.1|2085489_2086203_+	phi77 ORF017-like protein	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
VEB66679.1|2086393_2087431_+	DNA integration/recombination/inversion protein	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
VEB66680.1|2087487_2088312_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
VEB66682.1|2088549_2089566_-	gamma-hemolysin component B	NA	A0A2I6PER8	Staphylococcus_phage	29.3	3.9e-26
VEB66683.1|2089587_2090640_-	Leukocidin S subunit	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
>prophage 13
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	2098101	2137317	2832348	protease,terminase,transposase	Staphylococcus_phage(21.43%)	36	NA	NA
VEB66692.1|2098101_2098692_-|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	94.7	1.2e-96
VEB66693.1|2098688_2098901_-|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
VEB66694.1|2099602_2101219_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	5.8e-157
VEB66695.1|2101294_2101579_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
VEB66697.1|2101755_2102499_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VEB66698.1|2102522_2103782_-	membrane anchored protein	NA	NA	NA	NA	NA
VEB66699.1|2103978_2104605_+	nitroreductase family protein	NA	NA	NA	NA	NA
VEB66700.1|2104874_2105660_+	Aliphatic amidase amiE	NA	NA	NA	NA	NA
VEB66702.1|2106574_2107198_+	accessory gene regulator protein B AGRB	NA	NA	NA	NA	NA
VEB66703.1|2107194_2107335_+	Regulator protein agrD	NA	NA	NA	NA	NA
VEB66704.1|2107359_2108652_+	Regulator protein agrC	NA	NA	NA	NA	NA
VEB66705.1|2108670_2109387_+	accessory gene regulator protein A	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
VEB66707.1|2109754_2110714_-	Fructokinase	NA	NA	NA	NA	NA
VEB66708.1|2110710_2112195_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	8.0e-20
VEB66709.1|2112343_2113294_-	Sucrose operon repressor ScrR, LacI family	NA	NA	NA	NA	NA
VEB66710.1|2113476_2114727_-	ammonium transporter family protein	NA	H8ZJB2	Ostreococcus_tauri_virus	31.0	1.0e-39
VEB66712.1|2114934_2115159_-	transcriptional regulator	NA	NA	NA	NA	NA
VEB66713.1|2115223_2116297_-	putative transport system permease protein	NA	NA	NA	NA	NA
VEB66714.1|2116600_2117236_-	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NA	NA	NA	NA	NA
VEB66715.1|2117488_2119417_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	30.7	1.2e-52
VEB66717.1|2120001_2120298_+|transposase	transposase for IS1272	transposase	A0A146ICT8	Staphylococcus_phage	97.9	7.5e-47
VEB66718.1|2120312_2121923_+	MutS-related protein, family 1	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.9	3.3e-19
VEB66719.1|2122024_2123050_-|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	40.9	5.3e-63
VEB66720.1|2123042_2123507_-	Ribosomal-protein-S18p-alanine acetyltransferase	NA	NA	NA	NA	NA
VEB66722.1|2123479_2124142_-|protease	Inactive protein of metal-dependent protease family, putative molecular chaperone	protease	NA	NA	NA	NA
VEB66723.1|2124122_2124617_-	ATP/GTP hydrolase	NA	NA	NA	NA	NA
VEB66724.1|2125094_2126783_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
VEB66726.1|2126810_2128580_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.9	2.0e-62
VEB66727.1|2128579_2128834_+	Acetolactate synthase small subunit	NA	NA	NA	NA	NA
VEB66728.1|2128971_2129976_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VEB66729.1|2130005_2131535_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	3.2e-08
VEB66731.1|2131537_2132584_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VEB66732.1|2132597_2133968_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
VEB66733.1|2133968_2134541_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
VEB66734.1|2134555_2135824_+	Threonine dehydratase	NA	NA	NA	NA	NA
VEB66735.1|2136024_2137317_+|transposase	transposase, putative	transposase	A0A2L1IVA1	Escherichia_phage	31.2	3.9e-15
>prophage 14
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	2509406	2564052	2832348	holin,transposase	Bacillus_phage(30.0%)	46	NA	NA
VEB67953.1|2509406_2509763_-|transposase	transposase for IS1272	transposase	A0A146ICT8	Staphylococcus_phage	99.2	7.7e-62
VEB67961.1|2510170_2511904_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.9	2.4e-31
VEB67965.1|2511928_2513692_-	ABC transporter ATPase/permease	NA	W8CYL7	Bacillus_phage	24.7	4.2e-36
VEB67970.1|2514692_2515079_-	Putative sugar translocase in surface polysaccharides biosynthesis	NA	NA	NA	NA	NA
VEB67974.1|2515346_2516489_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
VEB67978.1|2516548_2517208_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEB67982.1|2517386_2518598_+	Bicyclomycin resistance protein TcaB	NA	NA	NA	NA	NA
VEB67986.1|2518720_2519194_-	Putative transcriptional activator	NA	NA	NA	NA	NA
VEB67992.1|2519306_2519963_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEB67996.1|2520025_2520832_-	putative phosphoesterase, putative	NA	NA	NA	NA	NA
VEB68000.1|2521117_2522527_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA	NA
VEB68004.1|2522664_2524743_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
VEB68008.1|2524882_2526712_-	Amino acid permease	NA	NA	NA	NA	NA
VEB68010.1|2526943_2528440_+	flp protein	NA	NA	NA	NA	NA
VEB68014.1|2528530_2529382_-	putative NAD-dependent epimerase/dehydratase	NA	NA	NA	NA	NA
VEB68017.1|2529705_2530641_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VEB68020.1|2530866_2532267_-	integral membrane efflux protein	NA	NA	NA	NA	NA
VEB68023.1|2532560_2533256_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
VEB68026.1|2533255_2534197_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
VEB68029.1|2534213_2534849_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VEB68033.1|2534845_2536072_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
VEB68036.1|2536741_2537341_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
VEB68038.1|2537521_2539159_+	Amino acid permease	NA	NA	NA	NA	NA
VEB68041.1|2539465_2540818_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	8.6e-13
VEB68044.1|2540879_2542067_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
VEB68047.1|2542460_2543237_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VEB68050.1|2543229_2543892_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	W8CYL7	Bacillus_phage	33.9	4.8e-17
VEB68053.1|2544237_2545314_-	endoglucanase M	NA	NA	NA	NA	NA
VEB68056.1|2545668_2545935_-	addiction module toxin	NA	NA	NA	NA	NA
VEB68059.1|2545934_2546192_-	prevent-host-death family protein	NA	NA	NA	NA	NA
VEB68062.1|2546550_2547006_+	lipoprotein	NA	NA	NA	NA	NA
VEB68065.1|2547173_2548751_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
VEB68069.1|2548945_2549695_+	membrane protein	NA	NA	NA	NA	NA
VEB68072.1|2550160_2551354_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
VEB68075.1|2551365_2552115_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.1e-20
VEB68078.1|2552107_2552923_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	30.3	3.6e-14
VEB68081.1|2552919_2553789_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VEB68084.1|2553785_2554721_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VEB68088.1|2554733_2556332_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
VEB68091.1|2556474_2557776_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEB68095.1|2557768_2558587_-	nicotianamine synthase	NA	NA	NA	NA	NA
VEB68098.1|2558597_2559419_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
VEB68101.1|2560297_2560663_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEB68103.1|2560926_2561745_-	Glutamate dehydrogenase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.5	1.7e-08
VEB68105.1|2561979_2563518_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
VEB68107.1|2563629_2564052_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 15
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2832348	2628797	2636904	2832348	transposase	Staphylococcus_phage(33.33%)	8	NA	NA
VEB68325.1|2628797_2629766_-	Esterase/lipase	NA	A0A167RJ59	Powai_lake_megavirus	26.1	6.8e-12
VEB68329.1|2629886_2630243_-	thioredoxin	NA	NA	NA	NA	NA
VEB68333.1|2630284_2630695_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
VEB68337.1|2631230_2631494_+|transposase	transposase for IS1272	transposase	A0A146ICT8	Staphylococcus_phage	97.7	2.2e-42
VEB68341.1|2632047_2632233_+|transposase	putative transposase	transposase	A0A146ICT8	Staphylococcus_phage	92.9	8.1e-15
VEB68345.1|2632337_2632682_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	92.1	2.0e-51
VEB68349.1|2632797_2634897_-	Pts system, glucose-specific iiabc component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.4e-07
VEB68353.1|2635164_2636904_-	Pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	1.0e-34
