assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	1	994035-994307	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,4,4	4	Unclear	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|919aa|up_9|LR134191.1_980629_983386_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|LR134191.1_983442_984744_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|LR134191.1_984791_987026_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|LR134191.1_987103_987352_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|LR134191.1_987351_987687_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|LR134191.1_987757_988549_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LR134191.1_988776_990414_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LR134191.1_990501_991800_+	PRK00077, eno, enolase; Provisional	NA|342aa|up_1|LR134191.1_991859_992885_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|LR134191.1_993023_993695_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134191.1_994945_996424_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|92aa|down_1|LR134191.1_996589_996865_+	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|126aa|down_2|LR134191.1_996909_997287_+	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|252aa|down_3|LR134191.1_997312_998068_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|LR134191.1_998137_999592_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_5|LR134191.1_999613_1001023_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|LR134191.1_1001000_1001780_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|LR134191.1_1001776_1002637_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|LR134191.1_1002784_1003360_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|LR134191.1_1003376_1003637_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	2	1019094-1019671	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GNGTTCCCCGCGNCAGCGGGGATAAACCG,GTTCCCCGCGTCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|126aa|up_9|LR134191.1_1009243_1009621_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|106aa|up_8|LR134191.1_1009661_1009979_+	TIGR02057, Phosphoadenosine_phosphosulfate_reductase, phosphoadenosine phosphosulfate reductase, thioredoxin dependent	cas3|889aa|up_7|LR134191.1_1010337_1013004_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|LR134191.1_1013418_1014927_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|LR134191.1_1014919_1015402_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|LR134191.1_1015414_1016506_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|LR134191.1_1016508_1017183_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|LR134191.1_1017169_1017769_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|LR134191.1_1017784_1018702_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|LR134191.1_1018703_1018988_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134191.1_1019752_1020790_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134191.1_1021041_1021950_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134191.1_1021951_1023379_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134191.1_1023378_1023984_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134191.1_1024033_1024357_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134191.1_1024550_1024862_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134191.1_1024880_1025591_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134191.1_1025590_1026070_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134191.1_1026066_1027116_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134191.1_1027096_1027858_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	3	1543536-1543653	3	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|397aa|up_9|LR134191.1_1534110_1535301_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|LR134191.1_1535297_1536557_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|LR134191.1_1536546_1538175_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|LR134191.1_1538447_1539806_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_5|LR134191.1_1539810_1540887_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_4|LR134191.1_1540928_1541135_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_3|LR134191.1_1541349_1542000_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_2|LR134191.1_1542053_1542308_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|179aa|up_1|LR134191.1_1542307_1542844_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|202aa|up_0|LR134191.1_1542833_1543439_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|466aa|down_0|LR134191.1_1543672_1545070_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|227aa|down_1|LR134191.1_1545276_1545957_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_2|LR134191.1_1546652_1550405_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_3|LR134191.1_1550532_1551255_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_4|LR134191.1_1551401_1554029_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_5|LR134191.1_1554177_1555866_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_6|LR134191.1_1555862_1556486_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|114aa|down_7|LR134191.1_1556629_1556971_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|230aa|down_8|LR134191.1_1556985_1557675_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|1096aa|down_9|LR134191.1_1557734_1561022_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	4	2202333-2202456	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|79aa|up_9|LR134191.1_2191238_2191475_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134191.1_2191785_2193198_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134191.1_2193754_2193964_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134191.1_2194419_2195046_+	PRK09898, PRK09898, ferredoxin-like protein	NA|610aa|up_5|LR134191.1_2195340_2197170_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134191.1_2197182_2197821_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134191.1_2197884_2198553_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134191.1_2198549_2199335_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134191.1_2199386_2200151_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134191.1_2200162_2201767_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134191.1_2202770_2204027_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134191.1_2204067_2205441_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134191.1_2205655_2206297_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|215aa|down_3|LR134191.1_2206335_2206980_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|98aa|down_4|LR134191.1_2207002_2207296_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|70aa|down_5|LR134191.1_2207276_2207486_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_6|LR134191.1_2207776_2208988_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_7|LR134191.1_2209100_2210033_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_8|LR134191.1_2210029_2211055_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_9|LR134191.1_2211608_2212778_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	6	3053416-3053559	6,3	CRISPRCasFinder,PILER-CR	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TGTGAATTTCTAAGCTGCCTGTACGGCAGTGAAC	28,34	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|431aa|up_9|LR134191.1_3038539_3039832_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|LR134191.1_3039922_3041266_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|LR134191.1_3041276_3041888_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|LR134191.1_3042042_3046032_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|LR134191.1_3046166_3046661_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|LR134191.1_3047205_3048171_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|LR134191.1_3048293_3050060_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|LR134191.1_3050060_3051782_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|LR134191.1_3051823_3052528_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|LR134191.1_3052812_3053031_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|LR134191.1_3053770_3056047_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|LR134191.1_3056077_3056398_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|LR134191.1_3056720_3056945_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|LR134191.1_3057017_3058964_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|LR134191.1_3058960_3060076_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|LR134191.1_3060190_3061183_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|LR134191.1_3061179_3062838_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|LR134191.1_3063263_3063959_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|LR134191.1_3064453_3065353_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|LR134191.1_3065496_3067149_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	7	3200916-3201060	7	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA|72aa|up_8|LR134191.1_3194979_3195195_+,NA|94aa|up_3|LR134191.1_3197587_3197869_+,NA|56aa|up_2|LR134191.1_3197957_3198125_+,NA	NA|64aa|up_9|LR134191.1_3194711_3194903_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|72aa|up_8|LR134191.1_3194979_3195195_+	NA	NA|74aa|up_7|LR134191.1_3195293_3195515_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|183aa|up_6|LR134191.1_3195511_3196060_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|302aa|up_5|LR134191.1_3196216_3197122_-	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|122aa|up_4|LR134191.1_3197079_3197445_-	PRK09413, PRK09413, IS2 repressor TnpA; Reviewed	NA|94aa|up_3|LR134191.1_3197587_3197869_+	NA	NA|56aa|up_2|LR134191.1_3197957_3198125_+	NA	NA|357aa|up_1|LR134191.1_3198360_3199431_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|LR134191.1_3199566_3200850_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134191.1_3201083_3203345_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134191.1_3203527_3204961_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134191.1_3205036_3206089_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134191.1_3206272_3207226_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134191.1_3207266_3208262_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134191.1_3208416_3209235_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134191.1_3209235_3210294_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134191.1_3210296_3210986_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134191.1_3210985_3211759_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134191.1_3211925_3212075_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	8	3439968-3440064	8	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|231aa|up_9|LR134191.1_3431752_3432445_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134191.1_3432664_3433207_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|LR134191.1_3433687_3434554_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134191.1_3434555_3434768_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134191.1_3434875_3435397_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134191.1_3435432_3436818_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134191.1_3436991_3437486_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134191.1_3437488_3438211_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|148aa|up_1|LR134191.1_3438395_3438839_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134191.1_3438835_3439903_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134191.1_3440097_3440991_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134191.1_3440987_3441803_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134191.1_3441813_3443073_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134191.1_3443082_3444750_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134191.1_3445066_3446116_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134191.1_3446137_3447373_+	TIGR03176, AllC, allantoate amidohydrolase	NA|239aa|down_6|LR134191.1_3447383_3448100_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|92aa|down_7|LR134191.1_3448133_3448409_+	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|126aa|down_8|LR134191.1_3448453_3448831_+	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|33aa|down_9|LR134191.1_3448847_3448946_+	TIGR03214, ura-cupin, putative allantoin catabolism protein
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	9	3574197-3574341	9	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|194aa|up_9|LR134191.1_3560497_3561079_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_8|LR134191.1_3561083_3562901_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_7|LR134191.1_3563056_3564430_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_6|LR134191.1_3564505_3565825_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_5|LR134191.1_3566231_3567527_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_4|LR134191.1_3567584_3568274_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|85aa|up_3|LR134191.1_3568463_3568718_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|324aa|up_2|LR134191.1_3568695_3569667_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|LR134191.1_3569663_3572810_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|423aa|up_0|LR134191.1_3572851_3574120_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|LR134191.1_3574364_3575273_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|326aa|down_1|LR134191.1_3575331_3576309_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|95aa|down_2|LR134191.1_3576955_3577240_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_3|LR134191.1_3577311_3577989_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_4|LR134191.1_3578246_3578438_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_5|LR134191.1_3578487_3579012_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_6|LR134191.1_3579188_3579653_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_7|LR134191.1_3579772_3580582_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_8|LR134191.1_3580598_3581714_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|107aa|down_9|LR134191.1_3581815_3582136_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF
GCA_900635895.1_35910_C01	LR134191	Escherichia coli strain NCTC5934 genome assembly, chromosome: 1	10	3757464-3757605	10	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	Unclear	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCA	41	1	1	3757505-3757564	LR134191.1_3758247-3758306	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|153aa|up_9|LR134191.1_3749323_3749782_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|LR134191.1_3750042_3751500_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|167aa|up_7|LR134191.1_3751556_3752057_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|LR134191.1_3752025_3752292_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|125aa|up_5|LR134191.1_3752525_3752900_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|LR134191.1_3752987_3753386_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|LR134191.1_3753388_3753682_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|LR134191.1_3753733_3754789_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|212aa|up_1|LR134191.1_3754859_3755495_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|LR134191.1_3755589_3757329_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|LR134191.1_3757646_3758144_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|LR134191.1_3758319_3759078_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|LR134191.1_3759369_3760110_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|LR134191.1_3760080_3760848_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|LR134191.1_3761053_3761632_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|LR134191.1_3761871_3764316_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|149aa|down_6|LR134191.1_3764358_3764805_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|LR134191.1_3764985_3765756_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|245aa|down_8|LR134191.1_3765797_3766532_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|126aa|down_9|LR134191.1_3766646_3767024_-	pfam03400, DDE_Tnp_IS1, IS1 transposase
