The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	1307643	1360818	4867363	tRNA,integrase,protease,transposase,capsid	uncultured_Caudovirales_phage(26.67%)	44	1314606:1314622	1324214:1324230
VEA90871.1|1307643_1307871_+|transposase	transposase IS1	transposase	A0A0U2RK18	Escherichia_phage	82.1	5.8e-23
VEA90873.1|1308161_1309136_-	Sel1 domain-containing protein repeat-containing protein	NA	NA	NA	NA	NA
VEA90875.1|1309162_1310038_-	protein RhsA	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	46.5	8.3e-25
VEA90877.1|1310634_1310835_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA90879.1|1310841_1310991_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA90881.1|1311514_1311784_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA90883.1|1311794_1312991_-	core protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	44.6	9.6e-24
VEA90885.1|1313537_1317713_-	core protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	46.3	2.6e-23
1314606:1314622	attL	CGTCTGCGTGGTGGTCA	NA	NA	NA	NA
VEA90886.1|1317780_1319892_-	Rhs family protein	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	26.7	2.4e-30
VEA90888.1|1320997_1321291_-|integrase	integrase family protein	integrase	A0A0R6PH06	Moraxella_phage	39.4	1.3e-06
VEA90890.1|1322195_1323611_+|tRNA	glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEA90892.1|1323664_1324036_-	DNA binding domain, excisionase family	NA	NA	NA	NA	NA
VEA90894.1|1324058_1324421_-	negative regulator	NA	NA	NA	NA	NA
1324214:1324230	attR	CGTCTGCGTGGTGGTCA	NA	NA	NA	NA
VEA90896.1|1325026_1327216_+	protein YfeA	NA	NA	NA	NA	NA
VEA90898.1|1327268_1328471_-	nucleoside permease NupC	NA	NA	NA	NA	NA
VEA90900.1|1328812_1330054_+	manganese transport protein MntH	NA	NA	NA	NA	NA
VEA90902.1|1330114_1330441_-	Protein of uncharacterised function (DUF2502)	NA	NA	NA	NA	NA
VEA90904.1|1330554_1331553_-	ion-channel protein	NA	NA	NA	NA	NA
VEA90906.1|1331732_1333385_+	decarboxylase	NA	NA	NA	NA	NA
VEA90908.1|1333404_1334640_-	Chloride channel protein	NA	NA	NA	NA	NA
VEA90910.1|1334843_1335809_+	glucokinase	NA	NA	NA	NA	NA
VEA90912.1|1336057_1336384_+	PTS system IIB component	NA	NA	NA	NA	NA
VEA90914.1|1336404_1337652_+	PTS system IIC component	NA	NA	NA	NA	NA
VEA90916.1|1337668_1338751_+	aminopeptidase	NA	NA	NA	NA	NA
VEA90918.1|1338750_1339791_+|protease	metalloprotease	protease	NA	NA	NA	NA
VEA90920.1|1339812_1342308_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA	NA
VEA90922.1|1342394_1343249_-	Putative HTH-type transcriptional regulator ypdC	NA	NA	NA	NA	NA
VEA90924.1|1343835_1345074_+	aminotransferase	NA	NA	NA	NA	NA
VEA90926.1|1345596_1346517_-	Protein Ddg	NA	A0A1W6JP29	Morganella_phage	53.5	2.4e-75
VEA90928.1|1346788_1346905_+	transporter	NA	NA	NA	NA	NA
VEA90930.1|1347061_1347304_+	Protein of uncharacterised function (DUF2545)	NA	NA	NA	NA	NA
VEA90932.1|1347895_1348834_+|protease	outer membrane protease	protease	NA	NA	NA	NA
VEA90934.1|1349069_1349552_-	repressor protein cI	NA	Q76H56	Enterobacteria_phage	96.2	1.5e-84
VEA90935.1|1350037_1350541_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA90937.1|1352725_1352953_+	Phage AlpA Prophage CP4-57 regulatory protein (AlpA)	NA	A0A1V0E8E5	Vibrio_phage	56.1	2.3e-11
VEA90939.1|1352970_1353831_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA90941.1|1353853_1354669_+|capsid	major capsid protein	capsid	F1BUM2	Cronobacter_phage	45.2	2.4e-58
VEA90943.1|1354658_1354859_+|capsid	major capsid protein	capsid	F1BUM2	Cronobacter_phage	61.9	5.1e-15
VEA90945.1|1355533_1355770_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA90947.1|1355762_1356173_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA90949.1|1356169_1357081_+	DNA primase	NA	A0A1W6JPG0	Morganella_phage	41.5	1.0e-46
VEA90951.1|1357096_1357876_-|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA90953.1|1357875_1358898_-|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA90955.1|1359078_1360818_+	DNA primase	NA	A0A1B0VP75	Pseudomonas_phage	32.2	2.6e-62
>prophage 2
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	1616223	1624780	4867363	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
VEA91367.1|1616223_1617171_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.2e-23
VEA91369.1|1617154_1617886_+	putative permease transmembrane component	NA	NA	NA	NA	NA
VEA91371.1|1617866_1617974_-	membrane protein	NA	NA	NA	NA	NA
VEA91373.1|1618033_1618765_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	88.4	4.1e-102
VEA91375.1|1618987_1620673_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.7	3.8e-276
VEA91377.1|1620669_1621389_+	two-component system response regulator	NA	NA	NA	NA	NA
VEA91379.1|1621435_1621906_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	92.1	3.0e-74
VEA91382.1|1622047_1622506_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	74.5	1.2e-54
VEA91384.1|1622746_1624780_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.7e-55
>prophage 3
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	1687590	1697139	4867363		Bacillus_phage(33.33%)	9	NA	NA
VEA91486.1|1687590_1688994_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	31.5	3.4e-20
VEA91488.1|1689170_1690064_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	41.9	3.1e-43
VEA91490.1|1690409_1690652_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91492.1|1690923_1691724_+	glycosyl transferase family 1	NA	NA	NA	NA	NA
VEA91494.1|1691774_1692893_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	66.1	1.4e-133
VEA91496.1|1693095_1693809_+	GDP-fucose synthetase	NA	D1LW79	Prochlorococcus_phage	51.3	6.9e-62
VEA91498.1|1693811_1694312_+	O-antigen biosynthesis protein	NA	NA	NA	NA	NA
VEA91500.1|1694304_1695753_+	mannose-1-phosphate guanyltransferase	NA	A0A1V0SH58	Hokovirus	31.9	3.0e-56
VEA91502.1|1695756_1697139_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	26.7	1.9e-31
>prophage 4
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	1737092	1764405	4867363	integrase	Pseudomonas_phage(33.33%)	26	1740338:1740397	1765295:1765379
VEA91577.1|1737092_1738355_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	40.1	5.8e-72
VEA91579.1|1738788_1740219_+	putative inner membrane protein	NA	NA	NA	NA	NA
1740338:1740397	attL	ACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTT	NA	NA	NA	NA
VEA91581.1|1740579_1741257_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	40.1	1.2e-31
VEA91583.1|1741647_1741914_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91585.1|1742107_1742314_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91587.1|1742498_1742639_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91589.1|1742806_1744273_+	secreted peptidase	NA	NA	NA	NA	NA
VEA91591.1|1745378_1745582_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91593.1|1745594_1746284_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91595.1|1747194_1748418_+	integral membrane transport protein	NA	S4TR35	Salmonella_phage	24.3	6.1e-26
VEA91597.1|1748410_1749352_+	oxaloacetate decarboxylase alpha subunit	NA	E5EQ69	Micromonas_sp._RCC1109_virus	29.6	2.5e-19
VEA91599.1|1749348_1750065_+	Alpha/beta hydrolase family	NA	NA	NA	NA	NA
VEA91601.1|1750061_1752215_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VEA91603.1|1752222_1752891_+	4-hydroxy-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
VEA91604.1|1752887_1753781_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91605.1|1753746_1754640_-	putative transcription regulator protein	NA	NA	NA	NA	NA
VEA91607.1|1754802_1755114_-|integrase	bacteriophage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	47.6	1.1e-11
VEA91609.1|1755118_1755355_-|integrase	bacteriophage integrase	integrase	Q7M297	Enterobacteria_phage	36.5	3.6e-07
VEA91611.1|1755440_1756058_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.1	2.3e-29
VEA91613.1|1756625_1756769_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91615.1|1757924_1758746_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91617.1|1758768_1759566_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91618.1|1759552_1761922_-	vgrS protein	NA	A0A077K8Q4	Ralstonia_phage	24.9	3.0e-21
VEA91620.1|1762147_1762666_-	Major exported protein Secreted protein hcp	NA	NA	NA	NA	NA
VEA91622.1|1763362_1763743_+	type VI secretion protein, family	NA	NA	NA	NA	NA
VEA91624.1|1763844_1764405_-|integrase	bacteriophage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	38.8	2.2e-23
1765295:1765379	attR	AACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTACAGAGGAATCGTTTCAACGAGGCGCATAATACGGGGC	NA	NA	NA	NA
>prophage 5
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	1810485	1855511	4867363	terminase,integrase,protease,transposase,tail,portal	Enterobacteria_phage(38.64%)	63	1810322:1810379	1855965:1856022
1810322:1810379	attL	GATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCAT	NA	NA	NA	NA
VEA91723.1|1810485_1811496_-|integrase	integrase	integrase	K7PLZ2	Enterobacterial_phage	64.0	8.1e-125
VEA91725.1|1811495_1811723_-	phage-like protein	NA	K7PHA0	Enterobacterial_phage	43.3	7.4e-10
VEA91727.1|1811730_1811877_-	Putative bacteriophage protein	NA	A0A1B5FPC2	Escherichia_phage	79.2	6.1e-18
VEA91729.1|1811873_1812089_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91731.1|1812088_1812550_-	ATPase involved in DNA repair	NA	A0A1B5FPC7	Escherichia_phage	51.2	9.7e-41
VEA91733.1|1812753_1812978_-	Uncharacterised protein	NA	A0A1B5FPG2	Escherichia_phage	64.8	4.3e-18
VEA91735.1|1812974_1813541_-	Mobile element protein	NA	A0A088C4R7	Shewanella_sp._phage	38.9	2.0e-27
VEA91737.1|1813537_1814272_-	IS phage Tn	NA	A0A1B5FPC0	Escherichia_phage	77.5	6.3e-103
VEA91739.1|1814283_1814691_-	Uncharacterised protein	NA	A0A286S1S2	Klebsiella_phage	70.9	8.0e-47
VEA91741.1|1814687_1814939_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91743.1|1814938_1815295_-	Uncharacterised protein	NA	A0A1B5FPB3	Escherichia_phage	49.6	2.0e-22
VEA91745.1|1815275_1815485_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91747.1|1815487_1815595_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91749.1|1815672_1815858_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91751.1|1815854_1816049_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91753.1|1816122_1816488_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91755.1|1816616_1817162_-	transcriptional repressor DicA	NA	NA	NA	NA	NA
VEA91758.1|1817271_1817727_-	transcriptional repressor DicA	NA	NA	NA	NA	NA
VEA91760.1|1817832_1818072_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91762.1|1818073_1818271_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91764.1|1818267_1819191_+	Replication protein O	NA	Q8W642	Enterobacteria_phage	66.7	1.4e-22
VEA91766.1|1819187_1819295_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91768.1|1819297_1821169_+	gp61	NA	Q5G8S8	Enterobacteria_phage	60.0	3.6e-227
VEA91770.1|1821138_1821495_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91772.1|1821491_1822328_+	Antitermination protein Q homolog from lambdoid prophage Qin	NA	A0A1B5FPA5	Escherichia_phage	84.1	4.7e-126
VEA91775.1|1822582_1822825_+|transposase	transposase	transposase	I4AZI8	Saccharomonospora_phage	32.4	7.4e-08
VEA91777.1|1822866_1823040_+|transposase	transposase	transposase	NA	NA	NA	NA
VEA91779.1|1823770_1824196_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA	NA
VEA91781.1|1824508_1824898_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	71.8	1.1e-40
VEA91783.1|1824884_1825166_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	79.6	4.4e-36
VEA91785.1|1825165_1825405_+	Phage endolysin	NA	Q8HA86	Salmonella_phage	89.5	2.6e-21
VEA91787.1|1825418_1826441_+|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA91789.1|1826440_1827220_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA91791.1|1827280_1827742_+	phage encoded lysozyme	NA	Q8HA86	Salmonella_phage	77.3	1.6e-64
VEA91793.1|1827738_1828275_+	exported phage protein	NA	NA	NA	NA	NA
VEA91796.1|1828457_1828559_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91798.1|1828668_1829160_+|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	56.2	1.3e-43
VEA91800.1|1829146_1831255_+|terminase	phage terminase large subunit	terminase	Q9EYD1	Enterobacteria_phage	70.7	9.5e-293
VEA91802.1|1831251_1831458_+	primosomal replication protein PriB/PriC domain protein	NA	A5LH28	Enterobacteria_phage	48.6	1.1e-07
VEA91804.1|1831454_1832948_+|portal	phage portal protein, lambda family protein	portal	K7PHM5	Enterobacterial_phage	63.4	7.9e-177
VEA91806.1|1832907_1835022_+|protease	ATP-dependent protease	protease	K7PGT6	Enterobacteria_phage	71.6	3.4e-274
VEA91808.1|1835110_1835434_+	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	62.3	8.6e-28
VEA91810.1|1835459_1835702_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	41.2	1.0e-09
VEA91811.1|1835705_1836290_+|tail	prophage minor tail protein Z	tail	A5LH33	Enterobacteria_phage	77.1	5.8e-75
VEA91813.1|1836286_1836688_+|tail	phage minor tail protein U	tail	A0A291AWY2	Escherichia_phage	66.9	2.9e-49
VEA91815.1|1836698_1837442_+|tail	putative tail component of prophage	tail	A0A291AWU6	Escherichia_phage	77.3	5.1e-100
VEA91817.1|1837492_1837888_+|tail	minor tail protein	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
VEA91819.1|1837908_1838223_+|tail	minor tail-like protein	tail	A5LH37	Enterobacteria_phage	62.9	8.0e-31
VEA91821.1|1838194_1841290_+|tail	tail protein	tail	A0A291AWX1	Escherichia_phage	62.1	2.8e-277
VEA91823.1|1841292_1841622_+|tail	tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
VEA91825.1|1841631_1842330_+|tail	Minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	3.2e-104
VEA91827.1|1842336_1843074_+	Tail fiber component K	NA	K7PLW1	Enterobacteria_phage	85.0	4.7e-130
VEA91829.1|1843112_1843619_+|tail	tail protein	tail	A5LH42	Enterobacteria_phage	79.8	2.4e-69
VEA91830.1|1843681_1844254_+|tail	Phage tail fiber protein	tail	K7PKJ2	Enterobacteria_phage	77.6	3.1e-73
VEA91832.1|1844231_1847045_+|tail	Phage tail fiber protein	tail	K7PKJ2	Enterobacteria_phage	81.4	0.0e+00
VEA91834.1|1847083_1847326_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA91836.1|1849704_1850238_+|tail	Phage tail fiber	tail	A0A1S6KZZ1	Salmonella_phage	72.5	3.3e-69
VEA91838.1|1851067_1851586_+	subtilase cytotoxin subunit B	NA	NA	NA	NA	NA
VEA91840.1|1851601_1852333_+	pertussis-like toxin subunit	NA	A0A0U2KD26	Escherichia_phage	52.4	1.6e-61
VEA91842.1|1852529_1853072_+	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	65.4	1.4e-70
VEA91844.1|1853250_1853616_-	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.2	9.4e-15
VEA91846.1|1853763_1854576_-	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	47.0	1.6e-59
VEA91848.1|1855286_1855511_-	virulence protein MsgA	NA	K7PKM2	Enterobacterial_phage	84.9	6.5e-27
1855965:1856022	attR	GATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCAT	NA	NA	NA	NA
>prophage 6
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	1924605	2037381	4867363	terminase,integrase,holin,protease,transposase,tail	Escherichia_phage(18.46%)	119	1940886:1940945	1993440:1995365
VEA91993.1|1924605_1924836_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
VEA91995.1|1924973_1925348_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
VEA91997.1|1925348_1926224_+	membrane protein	NA	NA	NA	NA	NA
VEA91999.1|1926240_1926591_+	Putative periplasmic or exported protein	NA	NA	NA	NA	NA
VEA92001.1|1926976_1928056_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	8.7e-101
VEA92003.1|1928030_1928303_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	36.4	3.0e-10
VEA92005.1|1928381_1928798_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92007.1|1928896_1929076_-	Protein of uncharacterised function (DUF1187)	NA	A0A0U2QL97	Escherichia_phage	62.1	4.3e-13
VEA92009.1|1929063_1929906_-	putative DNA methylase	NA	A0A0K1LM14	Caulobacter_phage	49.8	4.0e-69
VEA92011.1|1929902_1930136_-	Uncharacterised protein	NA	S4TVX5	Salmonella_phage	47.7	3.3e-13
VEA92013.1|1930170_1931001_-	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.3e-104
VEA92015.1|1930993_1933684_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	74.9	9.1e-115
VEA92017.1|1933824_1934160_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92019.1|1934235_1934442_-	prophage Kil protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
VEA92021.1|1934445_1934721_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92023.1|1934999_1935242_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92025.1|1935302_1935572_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92026.1|1935677_1935833_-	Protein of uncharacterised function (DUF1391)	NA	M4QQ57	Salicola_phage	55.3	2.7e-08
VEA92028.1|1936129_1936462_-	putative regulator	NA	A0A0M4R5D1	Salmonella_phage	32.7	5.6e-06
VEA92030.1|1936626_1936881_+	CRO	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
VEA92032.1|1936867_1937362_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
VEA92034.1|1937408_1938416_+	replication protein	NA	A0A0U2RT81	Escherichia_phage	67.5	1.5e-123
VEA92036.1|1938408_1938870_+	Replication protein 14	NA	A0A0U2JGJ0	Escherichia_phage	74.8	4.6e-67
VEA92038.1|1938884_1939280_+	DNA-binding protein	NA	A0A088CBK9	Shigella_phage	38.1	3.7e-17
VEA92040.1|1939565_1940696_-	Bacteriophytochrome cph2	NA	NA	NA	NA	NA
1940886:1940945	attL	TGTTACCAACGGTGCGAAAGTGATCCATATCCGACGCCTGAAATCAGATCCAGGGGTTAA	NA	NA	NA	NA
VEA92042.1|1940971_1941994_+|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA92044.1|1941993_1942773_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA92046.1|1943050_1945030_+	alkyl/aryl-sulfatase BDS1	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	1.1e-162
VEA92048.1|1945050_1945287_+	phage membrane protein	NA	NA	NA	NA	NA
VEA92050.1|1945714_1945963_+	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
VEA92052.1|1946026_1946353_+	IrsA	NA	A0A0U2RT94	Escherichia_phage	84.4	3.1e-41
VEA92054.1|1946621_1946816_+	Phage protein	NA	S4TNP0	Salmonella_phage	61.5	7.9e-13
VEA92056.1|1946797_1947094_+	Protein of uncharacterised function (DUF1364)	NA	K7P7Q1	Enterobacteria_phage	78.0	5.1e-35
VEA92058.1|1947090_1947645_+	putative bacteriophage protein	NA	A0A0U2S606	Escherichia_phage	64.6	2.8e-63
VEA92060.1|1948306_1948615_+|holin	phage-holin analog protein	holin	NA	NA	NA	NA
VEA92062.1|1948592_1949132_+	Phage endolysin R	NA	K7PLY1	Enterobacteria_phage	71.2	5.7e-77
VEA92064.1|1949232_1949700_+	Phage outer membrane lytic protein Rz, Endopeptidase	NA	Q8HA85	Salmonella_phage	83.1	8.0e-59
VEA92066.1|1949925_1950114_+	Protein of uncharacterised function (DUF826)	NA	NA	NA	NA	NA
VEA92068.1|1950177_1950807_+|terminase	putative prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	98.1	3.3e-108
VEA92070.1|1950809_1952429_+	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	80.5	1.5e-261
VEA92071.1|1952428_1953949_+	Phage-associated protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	45.5	5.2e-107
VEA92073.1|1953989_1954679_+	putative bacteriophage protein	NA	H9C0V1	Aeromonas_phage	49.6	3.4e-58
VEA92075.1|1954675_1956007_+	Uncharacterized protein conserved in bacteria	NA	A0A219YCD3	Aeromonas_phage	36.6	1.3e-66
VEA92077.1|1956008_1956491_+	Uncharacterised protein	NA	A0A2R3UAX9	Myoviridae_environmental_samples	50.3	3.2e-26
VEA92079.1|1956490_1957519_+	Uncharacterised protein	NA	A0A219YBB0	Aeromonas_phage	47.2	7.3e-81
VEA92081.1|1957522_1957870_+	Uncharacterised protein	NA	H9C0V9	Aeromonas_phage	38.1	1.5e-09
VEA92083.1|1957875_1958322_+	Uncharacterised protein	NA	A0A068CGG9	Acinetobacter_phage	42.3	6.1e-16
VEA92085.1|1958315_1958900_+	Mu-like prophage protein gpG	NA	H9C0W2	Aeromonas_phage	30.3	1.6e-16
VEA92087.1|1958896_1959262_+	Uncharacterised protein	NA	A0A077KAW7	Edwardsiella_phage	40.5	3.0e-21
VEA92089.1|1959246_1959792_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92091.1|1959772_1961257_+	Protein of uncharacterised function (DUF3383)	NA	A0A077KGV4	Edwardsiella_phage	41.0	4.0e-96
VEA92093.1|1961257_1961704_+	Uncharacterised protein	NA	Q2NPD1	Xanthomonas_phage	39.7	4.8e-21
VEA92095.1|1961703_1962108_+	Uncharacterised protein	NA	H9C0W7	Aeromonas_phage	43.1	2.6e-18
VEA92097.1|1962315_1964487_+	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	65.8	4.9e-50
VEA92098.1|1964483_1965194_+	Uncharacterised protein	NA	A0A077KGW3	Edwardsiella_phage	35.0	1.4e-27
VEA92100.1|1965193_1965496_+	Uncharacterised protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	5.4e-24
VEA92102.1|1965492_1966359_+	Uncharacterised protein	NA	A0A077KC17	Edwardsiella_phage	32.7	1.5e-31
VEA92104.1|1966342_1967017_+	Mu-like prophage protein gp45	NA	A0A077KAY0	Edwardsiella_phage	36.0	7.0e-32
VEA92106.1|1967029_1967386_+	Uncharacterised protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	1.6e-19
VEA92108.1|1967382_1968624_+	bacteriophage protein	NA	A0A077KGW9	Edwardsiella_phage	49.9	1.6e-101
VEA92110.1|1968625_1969228_+	Protein of uncharacterised function (DUF2612)	NA	H9C0Y0	Aeromonas_phage	43.2	5.9e-30
VEA92112.1|1969217_1970666_+|tail	side tail fiber protein	tail	E5G6P0	Salmonella_phage	69.6	1.1e-37
VEA92114.1|1970662_1971487_+|tail	phage tail assembly-like protein	tail	A0A0M4QWS3	Salmonella_phage	87.9	4.9e-136
VEA92116.1|1972806_1973508_-	Protein of uncharacterised function (DUF1076)	NA	B6DZC0	Enterobacteria_phage	29.2	1.3e-15
VEA92117.1|1974494_1974896_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	47.7	5.8e-26
VEA92119.1|1976033_1976318_-	Uncharacterized HTH-type transcriptional regulator YddM	NA	A0A2L1IV52	Escherichia_phage	54.5	4.7e-22
VEA92120.1|1976317_1976596_-	Plasmid maintenance system killer protein	NA	A0A2L1IV28	Escherichia_phage	55.4	1.8e-26
VEA92122.1|1977178_1977865_-	virulence protein	NA	Q9MBM0	Phage_Gifsy-2	70.6	3.9e-86
VEA92124.1|1978289_1979120_+|tail	Phage tail fiber	tail	Q8HAB4	Salmonella_phage	49.4	9.9e-36
VEA92126.1|1979122_1979557_+|tail	Phage tail fiber	tail	A0A1S6KZZ1	Salmonella_phage	69.9	1.5e-43
VEA92127.1|1979810_1982117_+	leucine-rich repeat protein	NA	Q9MBL9	Phage_Gifsy-2	46.5	1.3e-24
VEA92128.1|1983901_1986013_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	45.7	6.9e-25
VEA92130.1|1986677_1986866_-|transposase	transposase	transposase	NA	NA	NA	NA
VEA92131.1|1986980_1987469_-|transposase	transposase-like protein	transposase	NA	NA	NA	NA
VEA92132.1|1988727_1990854_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	69.9	5.3e-57
VEA92133.1|1991033_1991573_-|integrase	integrase	integrase	NA	NA	NA	NA
VEA92135.1|1991611_1992391_-|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA92136.1|1992390_1993413_-|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA92138.1|1993439_1993964_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92139.1|1993990_1994776_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA92140.1|1994780_1995272_-	Positive regulator GrlA	NA	NA	NA	NA	NA
VEA92141.1|1995367_1996528_-	fimbrial protein	NA	NA	NA	NA	NA
1993440:1995365	attR	TTAACCCCTGGATCTGATTTCAGGCGTCGGATATGGATCACTTTCGCACCGTTGGTAACAATCAACAGATGTGTACTGATATAAGCCAGGCCCAATTTTGCAGGTATCCATCTGAACCCGATCACCGGGAACAGGGCGTTCGTAGCGAATGAAATCAGCTTTACGCCGGAATTTAACAACAGGTTTAACCTGATTTTGGCAAAGGACTTTGTGGATTGTTGCCATTGCCAGTGAGATTGAATGAAGACGTTTTAACTCGCTTTGAATCCGTCTTGCACCCAGATTTCTCTGGGTACGTAACTCCAGAATCAGAGCGACTTCGTCAGCGCCGGTTTTCGTTGATGGTGAGTGTTTAGGGCGACGGCTTTGGCTTTCCAGACCAGCAATGCCCTGAGCCAGATATCTGCGCCACCATTTACGCAATGTGGGCCGAGAAATGCCACAGCGACGGCATACGAACCCCGCATCACCGGACGTATCATAGAGTTTTACCCACTGTAGTCGCTGCTGAGTTTCTCTGTTCATAGTGAGGCATTATAGTGAAACGATGTCTATGAATCACACAGATTAGGATATACAGTTTTCGCCGGAGCCATAAAAATCGTTTTTTGCATATTCATACAGAATCGGGTGCCGTGCAACAGTTCACGTAATCGATTTCTCATGCCTAATTTCACCAGCAAGCGGTACTTGTCTTGCCAGATTTGTCTCTCCCTTGCATTCAGTCGTCCACAGAGCGCTGACAGTCTTCCCCGGCCACGGTAAACCTCCTCAAGCAGACGCTGCTGGGCCGGACTCACTCCACATGCCAGAATTTCCCTATGCATCAGCAGTGACATGTAGCGCATCAGCTGCTTTGGATTATTGAATATTTGGGGAACTTCCAGAAAACCTGTTACCGGGGTCGGATATAACAGAAAATTGTCCAGCTTTAGCATCGTTTGGCGACGCGTTCCGCCGTACCATTGATTTCCTTGTTTAATCTGTATAAGCATCTCTGTTAGTTCCCGCTGTTGAATCGCCGGGATACCTCCATATACCTTTAGTACCAGATGGTCACTAAAAAACAGTTCATCGCTGATGACCAGAACCGGGTGATCCAGGAGCGCTTGCTTCAGGGCGTAAAATAAAAAAAGATGTTCACGAGGGCGCAGACACAATACTAACGTTGCTTGCGGCTTTTGGTACAGTTGCTGCAACAGAGCTGGCAGTGCGTACGTAATTTCATATTCACACGCAGACAGAACTGACCTGGCCAGATGTGCCACGGCGGTAGCTATCGGCCAGCAGTCACCATAAATAATAACCTGGCGGGCTGGTGTCGGGTTATAGCTCATCATCCTAATCCTCCTTTTTCAGGATTTTCCCGGCATGTCTGTTACTGCACAGCCTGTTCCACAGTTCATTCGCCTGTGTCTTGTCACCATTCCCCACCCGGTATTTCGTTAACGGTGGTGCCGCGCCCCGTTCCTGTCGGGTCGGCACAGGGTTTTCAAGAATACGAATGATATAGATCTCATAACGCCGAGCTTTATTGAACAGTGTCTGGTAGCGGCACACGCAGACCACCCGCGACGCTTTATTTCTCAGGTAGGAAATCAGATAGCTGGCCCGCCTTGCGGTGATGTGAAAGGCCTCGGATATCTGTCCACGCTGAACCCAGCCCTGCTGTTGCAGACACCAGTGCGCCACAATGATATACAGGGGAGCCCCGGCGTACTGGCGAACACTCTCTGGAATAAAACAGGTATCATGATTTGTCTGGGCTGGATAATGAATGTCCTTACCTCCGGCTGCGTACAGTTTCTTCTTTTGCGTATTGTCAGAGCACATAAAAACCTCGTCATCATGATTAACGAAAAAACCAGTGCTAATTAGTCAAGTAATTATTTGTGATTATTATTTTGTTACCGGAATAACGGGGTT	NA	NA	NA	NA
VEA92143.1|1996520_1997267_-	fimbrial chaperone protein StdC	NA	NA	NA	NA	NA
VEA92144.1|1997308_1999798_-	fimbrial usher protein	NA	NA	NA	NA	NA
VEA92147.1|1999982_2000588_-	fimbrial protein	NA	NA	NA	NA	NA
VEA92149.1|2001558_2002035_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92151.1|2002423_2003146_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
VEA92152.1|2003427_2003592_+	membrane protein	NA	NA	NA	NA	NA
VEA92153.1|2003812_2004463_+	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	52.6	9.1e-61
VEA92154.1|2004481_2004673_-	putative secreted protein	NA	NA	NA	NA	NA
VEA92156.1|2004783_2005023_-	conserved domain protein	NA	NA	NA	NA	NA
VEA92157.1|2005129_2006671_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
VEA92158.1|2006646_2009280_-	mce-related protein	NA	NA	NA	NA	NA
VEA92159.1|2009248_2010532_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
VEA92161.1|2010588_2011158_+	GAF domain-containing protein	NA	NA	NA	NA	NA
VEA92162.1|2011255_2011942_+	ProP effector	NA	NA	NA	NA	NA
VEA92163.1|2011961_2014010_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.4	4.0e-86
VEA92164.1|2014203_2015085_+	heat shock protein	NA	NA	NA	NA	NA
VEA92166.1|2015132_2016506_-	export protein	NA	NA	NA	NA	NA
VEA92167.1|2016681_2017473_+	transcriptional regulator KdgR	NA	NA	NA	NA	NA
VEA92168.1|2017677_2017917_-	putative exported protein	NA	NA	NA	NA	NA
VEA92170.1|2018074_2018218_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA92172.1|2018288_2018570_+	putative exported protein	NA	NA	NA	NA	NA
VEA92174.1|2019803_2021549_+	penicillin-binding protein	NA	NA	NA	NA	NA
VEA92177.1|2021614_2022424_+	23S rRNA methyltransferase A	NA	NA	NA	NA	NA
VEA92179.1|2022420_2022987_-	membrane protein YebN	NA	NA	NA	NA	NA
VEA92181.1|2023396_2023855_-	membrane protein	NA	NA	NA	NA	NA
VEA92183.1|2023912_2024764_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
VEA92185.1|2024776_2025577_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA	NA
VEA92187.1|2025630_2026599_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
VEA92189.1|2027070_2028630_+	Magnesium and cobalt efflux protein CorC	NA	A0A0R6PEZ3	Moraxella_phage	44.4	7.3e-40
VEA92191.1|2028651_2030253_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA	NA
VEA92192.1|2030390_2031755_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
VEA92194.1|2032030_2032609_-	putative nudix hydrolase YeaB	NA	NA	NA	NA	NA
VEA92196.1|2032612_2033977_-	para-aminobenzoate synthase component I	NA	A0A0B5J984	Pandoravirus	33.5	2.5e-44
VEA92198.1|2034057_2034237_+	conserved domain protein	NA	NA	NA	NA	NA
VEA92200.1|2034242_2034587_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA	NA
VEA92202.1|2034717_2036628_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	32.7	4.5e-92
VEA92204.1|2036685_2037381_+|protease	metal-dependent protease-like protein, putative molecular chaperone	protease	NA	NA	NA	NA
>prophage 7
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	2244289	2305582	4867363	tRNA,transposase	Escherichia_phage(31.25%)	57	NA	NA
VEA92605.1|2244289_2245225_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	7.2e-144
VEA92608.1|2246185_2249512_+	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	51.8	0.0e+00
VEA92610.1|2249714_2250188_+	Multidrug transporter emrE Efflux-multidrug resistance protein emrE; Methyl viologen resistance protein C; Ethidium resistance protein	NA	NA	NA	NA	NA
VEA92612.1|2250240_2250675_-	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	51.4	2.7e-29
VEA92614.1|2251156_2254681_-	pyruvate-flavodoxin oxidoreductase	NA	NA	NA	NA	NA
VEA92616.1|2254956_2255223_+	Putative hemolysin	NA	NA	NA	NA	NA
VEA92618.1|2255266_2255677_-	heat shock protein HslJ	NA	NA	NA	NA	NA
VEA92620.1|2255787_2256777_-	D-lactate dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	42.8	2.4e-68
VEA92622.1|2257043_2259680_+	Putative uncharacterized protein ydbH	NA	NA	NA	NA	NA
VEA92624.1|2259679_2259871_+	conserved domain protein	NA	NA	NA	NA	NA
VEA92626.1|2259878_2260202_+	putative secreted protein	NA	NA	NA	NA	NA
VEA92627.1|2260370_2260820_+	glutathione-dependent formaldehyde-activating, GFA	NA	NA	NA	NA	NA
VEA92629.1|2260816_2261422_-	ACP phosphodiesterase	NA	NA	NA	NA	NA
VEA92631.1|2261604_2265525_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	30.0	6.5e-53
VEA92633.1|2265611_2266412_+	protein YdcF	NA	NA	NA	NA	NA
VEA92635.1|2266528_2267059_+	Cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	44.9	9.1e-19
VEA92637.1|2267312_2267975_-	type 12 methyltransferase	NA	NA	NA	NA	NA
VEA92639.1|2268285_2268966_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VEA92641.1|2268962_2269694_-	sulfate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.6	9.0e-25
VEA92643.1|2269718_2270366_-	polar amino acid ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VEA92645.1|2270372_2271134_-	amino acid-binding protein	NA	NA	NA	NA	NA
VEA92647.1|2272046_2272403_+	cyanate transport	NA	NA	NA	NA	NA
VEA92649.1|2272494_2273721_-	pathogenicity island 2 effector protein SseJ	NA	Q9MBL9	Phage_Gifsy-2	35.8	1.4e-09
VEA92651.1|2274095_2274812_+	putative inner membrane protein	NA	NA	NA	NA	NA
VEA92653.1|2274886_2275075_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92655.1|2275081_2275483_-	dipicolinate reductase	NA	NA	NA	NA	NA
VEA92656.1|2275785_2276028_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92658.1|2276204_2276480_+	FrmR: Negative transcriptional regulator of formaldehyde detoxification operon	NA	NA	NA	NA	NA
VEA92660.1|2276511_2277630_+	alcohol dehydrogenase class III	NA	E3SJ82	Synechococcus_phage	28.8	1.2e-31
VEA92662.1|2277799_2279425_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.5	3.7e-10
VEA92664.1|2279485_2280409_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA92666.1|2280701_2282045_+	protein ydcJ	NA	NA	NA	NA	NA
VEA92667.1|2282094_2283603_+	esterase	NA	G5CSV8	Megavirus	37.1	2.3e-30
VEA92668.1|2283858_2285478_+	glucan biosynthesis protein D	NA	NA	NA	NA	NA
VEA92670.1|2285682_2286249_+	YceI	NA	NA	NA	NA	NA
VEA92671.1|2286257_2287463_+	L-lactate oxidase	NA	NA	NA	NA	NA
VEA92672.1|2287509_2287947_-	aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA	NA
VEA92673.1|2287946_2288744_-	Putative regulatory protein	NA	NA	NA	NA	NA
VEA92674.1|2288922_2290122_-	YdeA protein	NA	NA	NA	NA	NA
VEA92676.1|2290111_2290375_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA92677.1|2290623_2290908_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEA92678.1|2290898_2291381_+	Uncharacterized protein y4aS	NA	NA	NA	NA	NA
VEA92680.1|2291658_2292108_+	putative lipoprotein	NA	NA	NA	NA	NA
VEA92682.1|2292308_2292665_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	36.6	1.3e-08
VEA92684.1|2292764_2293052_+	Insertion element IS630 uncharacterized 39 kDa protein ISO-IS200 39 kDa protein	NA	NA	NA	NA	NA
VEA92686.1|2293067_2293847_-|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA92688.1|2293846_2294869_-|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA92690.1|2294927_2295428_+|transposase	transposase	transposase	NA	NA	NA	NA
VEA92692.1|2296047_2296584_+	fimbrial protein	NA	NA	NA	NA	NA
VEA92694.1|2296637_2297369_+	chaperone protein EcpD	NA	NA	NA	NA	NA
VEA92696.1|2297379_2299926_+	putative outer membrane usher protein	NA	NA	NA	NA	NA
VEA92698.1|2300126_2301179_+	G lectin	NA	NA	NA	NA	NA
VEA92700.1|2301341_2301794_+	Inhibitor of vertebrate lysozyme precursor	NA	NA	NA	NA	NA
VEA92702.1|2301959_2302778_-|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	88.0	4.6e-102
VEA92704.1|2303191_2304367_+	Uncharacterized hydrolase YxeP	NA	NA	NA	NA	NA
VEA92706.1|2304423_2305047_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA92708.1|2305228_2305582_+|transposase	transposase	transposase	Q9MCT5	Escherichia_phage	84.2	1.3e-50
>prophage 8
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	2723198	2737160	4867363	transposase,tail	Escherichia_phage(40.0%)	16	NA	NA
VEA93453.1|2723198_2725178_-	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	75.7	1.8e-22
VEA93455.1|2725365_2726145_-|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA93457.1|2726144_2727167_-|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA93459.1|2727528_2727675_+	Uncharacterised protein	NA	G8C7U1	Escherichia_phage	61.5	1.4e-06
VEA93461.1|2727843_2728968_-	bacteriophage protein	NA	NA	NA	NA	NA
VEA93463.1|2729610_2730471_-	Transposase IS116/IS110/IS902 family	NA	Q9JMN8	Wolbachia_phage	40.8	4.0e-56
VEA93465.1|2730511_2730928_-	Uncharacterised protein	NA	Q9JMN8	Wolbachia_phage	52.3	7.1e-35
VEA93468.1|2731317_2731656_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA93470.1|2731710_2732253_-|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
VEA93472.1|2732249_2732864_-	bacteriophage protein	NA	Q8HA86	Salmonella_phage	92.6	2.1e-107
VEA93474.1|2732863_2733145_-	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	79.6	5.7e-36
VEA93477.1|2733131_2733521_-	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	71.8	6.9e-40
VEA93479.1|2733766_2733952_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA93481.1|2734143_2734662_-	Colicin-M	NA	NA	NA	NA	NA
VEA93483.1|2735848_2736022_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA93485.1|2736323_2737160_-	Antitermination protein Q homolog from lambdoid prophage Qin	NA	A0A1B5FPA5	Escherichia_phage	76.3	1.9e-119
>prophage 9
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	2985348	3034364	4867363	tRNA,transposase,integrase,protease	uncultured_Mediterranean_phage(10.53%)	41	2974253:2974267	3036653:3036667
2974253:2974267	attL	CATATTACGACAACT	NA	NA	NA	NA
VEA93939.1|2985348_2986641_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	2.5e-94
VEA93941.1|2986898_2988242_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	41.3	2.8e-80
VEA93943.1|2988251_2988863_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEA93945.1|2989005_2992953_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.8e-88
VEA93947.1|2993087_2993582_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
VEA93949.1|2994129_2995098_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	45.2	1.1e-62
VEA93951.1|2995212_2996979_+	cysteine/glutathione ABC transporter membrane /ATP-binding component	NA	W8CYL7	Bacillus_phage	25.1	7.8e-22
VEA93953.1|2996979_2998701_+	transport ATP-binding protein CydC	NA	W8CYL7	Bacillus_phage	23.7	2.2e-13
VEA93955.1|2998745_2999450_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
VEA93957.1|2999761_2999980_+	initiation factor IF-1	NA	NA	NA	NA	NA
VEA93959.1|3000069_3000981_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA93961.1|3001089_3001950_+	pirin-like protein	NA	NA	NA	NA	NA
VEA93963.1|3001969_3002647_+	Isochorismatase family protein	NA	NA	NA	NA	NA
VEA93965.1|3003328_3005605_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.2	2.8e-165
VEA93967.1|3005635_3005956_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
VEA93969.1|3006279_3006501_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
VEA93971.1|3006639_3008586_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	42.7	2.7e-39
VEA93973.1|3008582_3009701_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.1e-08
VEA93975.1|3009846_3010797_+	virK protein	NA	NA	NA	NA	NA
VEA93977.1|3010793_3012452_-	putative ATP-dependent endonuclease of the OLDfamily YbjD subgroup	NA	NA	NA	NA	NA
VEA93979.1|3012652_3013552_+	Surface protein	NA	NA	NA	NA	NA
VEA93981.1|3013695_3015348_+	Hydroxylamine reductase	NA	NA	NA	NA	NA
VEA93983.1|3015359_3016328_+	oxidoreductase	NA	NA	NA	NA	NA
VEA93985.1|3016454_3018173_+	pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.3	8.3e-29
VEA93987.1|3018211_3019213_+	L-allo-threonine aldolase	NA	NA	NA	NA	NA
VEA93989.1|3019223_3020657_+	NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
VEA93991.1|3020752_3021766_+	oxidoreductase	NA	NA	NA	NA	NA
VEA93993.1|3021762_3022593_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	29.9	7.4e-07
VEA93995.1|3022589_3022913_-	cytoplasmic protein	NA	NA	NA	NA	NA
VEA93997.1|3023305_3023464_+	virulence protein MsgA	NA	K7PKR6	Enterobacteria_phage	76.5	1.5e-14
VEA93999.1|3023961_3024096_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA94001.1|3024247_3024427_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA94003.1|3025402_3026299_+	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
VEA94005.1|3026681_3026795_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA94007.1|3026781_3027018_-	exported phage protein	NA	NA	NA	NA	NA
VEA94009.1|3027170_3027950_-|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA94011.1|3027949_3028972_-|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA94013.1|3028985_3029480_-	Phage endolysin	NA	T1SBJ3	Salmonella_phage	81.8	1.1e-63
VEA94015.1|3030927_3031332_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA94017.1|3033464_3033578_+|integrase	integrase	integrase	Q859D2	Escherichia_coli_phage	81.8	4.0e-09
VEA94019.1|3033689_3034364_+|integrase	integrase	integrase	Q20GI2	Phage_258-320	54.6	3.3e-66
3036653:3036667	attR	CATATTACGACAACT	NA	NA	NA	NA
>prophage 10
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	3361840	3404484	4867363	tRNA,integrase,protease,transposase,tail	Salmonella_phage(46.15%)	43	3361056:3361100	3372586:3372630
3361056:3361100	attL	TGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
VEA94604.1|3361840_3362809_-	Fis family transcriptional regulator	NA	Q9MBL9	Phage_Gifsy-2	95.0	4.3e-184
VEA94606.1|3362997_3364302_-	Uncharacterised protein	NA	A0A1V0E5M2	Salmonella_phage	59.1	4.7e-133
VEA94608.1|3364312_3365272_-	Uncharacterised protein	NA	H6WRW5	Salmonella_phage	95.6	8.7e-177
VEA94610.1|3365280_3367596_-|tail	tail protein	tail	S4TTF5	Salmonella_phage	96.5	0.0e+00
VEA94612.1|3367894_3368569_+	conserved hypothetical bacteriophage protein	NA	A0A1B0VCG7	Salmonella_phage	59.7	4.4e-58
VEA94614.1|3368595_3369618_+|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA94616.1|3369617_3370397_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA94617.1|3370487_3370688_+	Uncharacterised protein family UPF0547	NA	NA	NA	NA	NA
VEA94619.1|3370698_3371109_+	prophage protein	NA	C6ZR26	Salmonella_phage	81.2	1.3e-20
VEA94621.1|3371406_3372570_+|integrase	integrase	integrase	B9UDL9	Salmonella_phage	89.4	2.2e-206
VEA94623.1|3372910_3373507_+	fimbriae regulatory protein FimW	NA	NA	NA	NA	NA
3372586:3372630	attR	TGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
VEA94625.1|3373671_3374397_+	EAL domain	NA	NA	NA	NA	NA
VEA94627.1|3374415_3375138_+	fimbriae Y protein	NA	NA	NA	NA	NA
VEA94629.1|3375740_3376373_+	transcriptional regulator	NA	NA	NA	NA	NA
VEA94631.1|3376418_3376937_-	adhesin	NA	NA	NA	NA	NA
VEA94633.1|3376946_3377954_-	adhesin	NA	NA	NA	NA	NA
VEA94635.1|3377968_3380581_-	outer membrane usher protein	NA	NA	NA	NA	NA
VEA94637.1|3380611_3381301_-	fimbrial chaperone protein FimC	NA	NA	NA	NA	NA
VEA94639.1|3381344_3381854_-	fimbrial protein FimI	NA	NA	NA	NA	NA
VEA94641.1|3381951_3382509_-	major type 1 subunit fimbrin (pilin)	NA	NA	NA	NA	NA
VEA94643.1|3383053_3383920_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	36.5	5.5e-29
VEA94645.1|3383921_3384134_+	ribosome-associated protein	NA	NA	NA	NA	NA
VEA94647.1|3384234_3385620_-|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	35.5	3.3e-44
VEA94649.1|3385792_3386287_+	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA	NA
VEA94651.1|3386289_3387012_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
VEA94653.1|3387129_3387639_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	NA	NA	NA	NA
VEA94655.1|3387635_3388703_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
VEA94657.1|3388798_3389887_+|tRNA	tRNA 2-selenouridine synthase	tRNA	NA	NA	NA	NA
VEA94659.1|3389904_3390561_-	putative lipoprotein	NA	NA	NA	NA	NA
VEA94661.1|3390557_3391391_-	Uncharacterized conserved protein (DUF2235)	NA	NA	NA	NA	NA
VEA94663.1|3391520_3392183_-	putative lipoprotein	NA	NA	NA	NA	NA
VEA94665.1|3392292_3394182_-	VgrG protein	NA	NA	NA	NA	NA
VEA94666.1|3394598_3395732_-	membrane protein	NA	NA	NA	NA	NA
VEA94668.1|3395816_3395921_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA94670.1|3395917_3398332_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VEA94671.1|3398328_3399015_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.6e-31
VEA94673.1|3399015_3399600_+	acyl-CoA thioesterase I	NA	NA	NA	NA	NA
VEA94675.1|3399754_3400525_+	Putative NAD(P)-dependent oxidoreductase EC-YbbO	NA	NA	NA	NA	NA
VEA94677.1|3400584_3401439_+	Thioredoxin domain-containing protein EC-YbbN	NA	NA	NA	NA	NA
VEA94679.1|3401527_3402307_-	YbbM seven transmembrane helix protein	NA	NA	NA	NA	NA
VEA94681.1|3402293_3402971_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.8	1.1e-21
VEA94683.1|3403117_3404035_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
VEA94685.1|3404031_3404484_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
>prophage 11
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	3552475	3602286	4867363	terminase,integrase,holin,head,transposase,tail,portal	Salmonella_phage(41.38%)	67	3553690:3553735	3598395:3598440
VEA94979.1|3552475_3552643_-|transposase	transposase, Mutator family protein	transposase	I6RSM4	Salmonella_phage	83.7	5.2e-13
VEA94981.1|3552811_3553186_-	leucine-rich repeat protein	NA	NA	NA	NA	NA
VEA94983.1|3553369_3553675_+|integrase	Phage integrase	integrase	A0A192Y6Q1	Salmonella_phage	93.8	2.9e-49
3553690:3553735	attL	TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
VEA94985.1|3554362_3554692_-	Error-prone lesion bypass DNA polymerase V(UmuC)	NA	I6RSM4	Salmonella_phage	84.0	1.8e-41
VEA94987.1|3554975_3556037_+	acetyltransferase family protein	NA	NA	NA	NA	NA
VEA94989.1|3556105_3557461_-	Uncharacterised protein	NA	I6R0Q9	Salmonella_phage	57.1	1.9e-129
VEA94991.1|3557471_3558431_-	Uncharacterised protein	NA	H6WRW5	Salmonella_phage	94.4	5.6e-176
VEA94993.1|3558432_3561642_-	gp29	NA	O64335	Escherichia_phage	86.5	0.0e+00
VEA94995.1|3561696_3562287_-|tail	phage tail assembly protein	tail	K7PH91	Enterobacterial_phage	77.4	4.5e-75
VEA94997.1|3562342_3562768_-	putative lipoprotein	NA	K7PLY8	Enterobacterial_phage	36.9	8.7e-12
VEA94999.1|3562797_3563508_-|tail	phage tail assembly protein	tail	K7PGR2	Enterobacteria_phage	91.5	6.5e-137
VEA95001.1|3563509_3564265_-|tail	tail protein	tail	K7PGX3	Enterobacteria_phage	85.3	6.9e-129
VEA95003.1|3564261_3564609_-|tail	tail protein	tail	K7PJT2	Enterobacteria_phage	70.4	1.4e-39
VEA95005.1|3564612_3567129_-|tail	minor tail protein	tail	K7PKR0	Enterobacteria_phage	69.0	1.2e-310
VEA95007.1|3567106_3567385_-|tail	minor tail-like protein	tail	K7PHE1	Enterobacteria_phage	66.3	1.8e-26
VEA95009.1|3567435_3567843_-|tail	minor tail protein	tail	K7PM17	Enterobacteria_phage	60.7	4.5e-26
VEA95011.1|3567879_3568617_-|tail	major tail protein	tail	O64327	Escherichia_phage	62.4	3.1e-81
VEA95013.1|3568624_3569023_-|tail	tail protein	tail	K7P7G5	Enterobacteria_phage	81.8	6.1e-60
VEA95014.1|3569019_3569574_-|tail	prophage minor tail protein Z	tail	K7P7A8	Enterobacteria_phage	92.0	7.2e-75
VEA95016.1|3569583_3569937_-|tail	tail attachment protein	tail	K7P6U9	Enterobacteria_phage	72.6	2.2e-45
VEA95018.1|3569948_3570353_-	DNA packaging protein	NA	K7P7M3	Enterobacteria_phage	53.5	2.1e-23
VEA95020.1|3570397_3571423_-|head	head protein	head	K7PGW9	Enterobacteria_phage	92.7	1.9e-182
VEA95022.1|3571490_3571823_-	Head decoration protein	NA	E4WL24	Enterobacteria_phage	82.7	1.4e-46
VEA95024.1|3571832_3573170_-	scaffold protein	NA	O64320	Escherichia_phage	78.3	2.7e-184
VEA95027.1|3573150_3574743_-|portal	phage portal protein, lambda family	portal	E4WL21	Enterobacteria_phage	92.1	7.4e-290
VEA95029.1|3574739_3574946_-|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	95.5	3.2e-28
VEA95031.1|3574945_3576292_-|terminase	phage terminase large subunit	terminase	E4WL19	Enterobacteria_phage	97.3	8.8e-260
VEA95033.1|3576350_3577373_+|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA95035.1|3577372_3578152_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA95037.1|3578167_3578827_-|terminase	phage terminase large subunit	terminase	E4WL19	Enterobacteria_phage	99.0	3.4e-116
VEA95039.1|3578801_3579347_-|terminase	terminase	terminase	E4WL18	Enterobacteria_phage	98.9	1.8e-94
VEA95041.1|3579637_3580039_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
VEA95043.1|3580295_3580940_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA95045.1|3580900_3581443_-|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
VEA95047.1|3581439_3582066_-	Phage endolysin	NA	Q858F0	Salmonella_phage	80.2	2.3e-93
VEA95049.1|3582068_3582410_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	1.3e-45
VEA95051.1|3582620_3583301_-	Gifsy-1 prophage RegQ	NA	I6PDF8	Cronobacter_phage	52.2	3.1e-59
VEA95053.1|3583297_3583438_-	DNA breaking-rejoining protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
VEA95055.1|3583434_3584046_-	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	98.5	1.3e-90
VEA95057.1|3584048_3584255_-	Phage protein	NA	S4TNP0	Salmonella_phage	98.5	3.9e-34
VEA95059.1|3584254_3584857_-	bacteriophage protein	NA	A0A0M4QX23	Salmonella_phage	98.0	2.0e-107
VEA95061.1|3585274_3585508_-	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
VEA95063.1|3585698_3586331_-	Uncharacterised protein	NA	H6WRY3	Salmonella_phage	92.9	1.9e-103
VEA95065.1|3586425_3586605_-	Protein of uncharacterised function (DUF1187)	NA	A0A0U2QL97	Escherichia_phage	62.1	1.9e-13
VEA95067.1|3586592_3587435_-	DNA modification methylase	NA	Q5QF26	Pseudomonas_virus	50.4	2.0e-68
VEA95069.1|3587431_3587779_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA95071.1|3587775_3588363_-	Uncharacterised protein	NA	M1F3E2	Salmonella_phage	46.7	4.0e-39
VEA95073.1|3588374_3588677_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	66.7	4.5e-31
VEA95075.1|3588717_3589467_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
VEA95077.1|3589469_3590447_-	regulatory protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
VEA95079.1|3590537_3590858_-	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
VEA95081.1|3590892_3591120_-	phage regulatory protein	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
VEA95082.1|3591225_3591660_+	regulatory protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
VEA95084.1|3591845_3591935_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA95086.1|3591931_3592132_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA95088.1|3592131_3592329_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA	NA
VEA95090.1|3592339_3592612_+	Uncharacterised protein	NA	S4TU79	Salmonella_phage	62.2	1.6e-27
VEA95092.1|3592695_3592992_+	Host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	2.0e-47
VEA95094.1|3592997_3593741_+	Recombinational DNA repair protein RecT (prophage associated)	NA	A0A0M4RD39	Salmonella_phage	68.8	3.7e-66
VEA95096.1|3593740_3594361_+	Integration, recombination (Phage or Prophage)	NA	A0A0S2SY31	Pseudomonas_phage	56.8	9.3e-55
VEA95098.1|3594357_3596706_+	putative DNA methylase	NA	A0A1B0V7P0	Salmonella_phage	47.5	1.1e-193
VEA95100.1|3596708_3596951_+	putative bacteriophage protein	NA	A0A0M4S646	Salmonella_phage	97.5	2.9e-36
VEA95102.1|3596992_3597340_+	HTH Phage	NA	K7P6W6	Enterobacteria_phage	67.6	5.4e-36
VEA95104.1|3597366_3598380_+|integrase	Phage integrase	integrase	M1FN74	Enterobacteria_phage	67.2	1.1e-132
VEA95106.1|3598585_3599836_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	1.0e-97
3598395:3598440	attR	TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
VEA95108.1|3599847_3600951_-	Glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
VEA95110.1|3601233_3602286_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	58.4	1.5e-113
>prophage 12
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	4127032	4182160	4867363	transposase,tRNA,integrase,protease	Vibrio_phage(25.0%)	49	4137126:4137140	4189065:4189079
VEA96033.1|4127032_4127764_-|tRNA	putative tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
VEA96035.1|4127826_4130271_-	ribonuclease R (RNase R)	NA	Q0GXV6	Lactococcus_phage	32.8	1.3e-67
VEA96051.1|4130308_4130734_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA96053.1|4130953_4132252_-	adenylosuccinate synthetase	NA	W5S5V7	Pithovirus	35.0	7.1e-65
VEA96055.1|4132354_4132552_-	membrane protein	NA	NA	NA	NA	NA
VEA96057.1|4132630_4133635_-|protease	FtsH protease regulator HflC	protease	NA	NA	NA	NA
VEA96059.1|4133637_4134897_-|protease	protease	protease	NA	NA	NA	NA
VEA96061.1|4135113_4136394_-|protease	GTP-binding subunit of protease	protease	NA	NA	NA	NA
VEA96063.1|4136465_4136774_-	host factor-I protein(HF-I)	NA	NA	NA	NA	NA
VEA96065.1|4136856_4137807_-|tRNA	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	tRNA	NA	NA	NA	NA
4137126:4137140	attL	CTTCAAATCCTGAAG	NA	NA	NA	NA
VEA96067.1|4137799_4139656_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.5	2.2e-59
VEA96069.1|4139665_4140988_-	N-acetylmuramoyl-l-alanine amidase II	NA	A0A067ZJB6	Vibrio_phage	29.2	1.8e-15
VEA96071.1|4141004_4141466_-	ATPase YjeE predicted to have essential rolein cell wall biosynthesis	NA	NA	NA	NA	NA
VEA96073.1|4141437_4142982_-	carbohydrate kinase	NA	NA	NA	NA	NA
VEA96075.1|4142983_4144123_+	Fe-S protein	NA	NA	NA	NA	NA
VEA96077.1|4144968_4145709_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEA96079.1|4145770_4146316_-	Oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	39.9	6.5e-28
VEA96082.1|4146422_4147475_+	ribosome-associated GTPase	NA	NA	NA	NA	NA
VEA96084.1|4147566_4148535_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
VEA96085.1|4148553_4151880_+	Potassium efflux system KefA protein	NA	NA	NA	NA	NA
VEA96086.1|4151937_4152252_-	inner membrane protein YjeO	NA	NA	NA	NA	NA
VEA96087.1|4152251_4152962_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96088.1|4153172_4154675_-	amino acid permease	NA	NA	NA	NA	NA
VEA96089.1|4154900_4155878_-|tRNA	lysyl-tRNA synthetase	tRNA	A0A2K9KZX5	Tupanvirus	29.1	1.7e-26
VEA96090.1|4156200_4157991_+	fumarate reductase flavoprotein subunit	NA	NA	NA	NA	NA
VEA96092.1|4157983_4158718_+	fumarate reductase, iron-sulfur protein	NA	NA	NA	NA	NA
VEA96094.1|4158728_4159124_+	fumarate reductase complex subunit C; membrane anchor polypeptide	NA	NA	NA	NA	NA
VEA96096.1|4159134_4159494_+	fumarate reductase complex subunit D; membrane anchor polypeptide	NA	NA	NA	NA	NA
VEA96098.1|4159606_4160140_+	lipoprotein	NA	A0A1W6JNX6	Morganella_phage	54.5	1.8e-46
VEA96100.1|4160144_4160462_-	SugE protein	NA	NA	NA	NA	NA
VEA96102.1|4160660_4161308_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
VEA96104.1|4161787_4162354_-	Elongation factor P EF-P	NA	NA	NA	NA	NA
VEA96106.1|4162394_4163423_+	Lysyl-lysine 23-aminomutase	NA	NA	NA	NA	NA
VEA96107.1|4163699_4164557_+	inner membrane protein	NA	NA	NA	NA	NA
VEA96109.1|4164604_4164958_-	membrane protein	NA	NA	NA	NA	NA
VEA96110.1|4165210_4166857_-	GroEL protein	NA	A0A2I7SAK5	Vibrio_phage	68.5	3.4e-189
VEA96113.1|4166900_4167194_-	GroES protein	NA	K4F9I2	Cronobacter_phage	43.3	1.2e-12
VEA96115.1|4167469_4168711_+	transporter	NA	NA	NA	NA	NA
VEA96117.1|4168771_4169287_-	FxsA protein	NA	NA	NA	NA	NA
VEA96119.1|4169587_4171024_+	aspartate ammonia-lyase	NA	NA	NA	NA	NA
VEA96121.1|4171137_4172439_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
VEA96123.1|4172559_4172907_+	Divalent cation tolerance protein	NA	NA	NA	NA	NA
VEA96125.1|4172882_4174586_+	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA	NA
VEA96127.1|4174622_4175198_+	transcriptional regulator	NA	NA	NA	NA	NA
VEA96129.1|4175567_4176581_-|integrase	probable phage integrase	integrase	NA	NA	NA	NA
VEA96131.1|4176743_4178408_-	Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyl transferase (E2) component-related enzyme	NA	NA	NA	NA	NA
VEA96133.1|4178400_4179888_-	DNA helicase	NA	A0A2I7R5Z1	Vibrio_phage	30.9	8.8e-43
VEA96135.1|4180358_4181381_+|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA96137.1|4181380_4182160_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
4189065:4189079	attR	CTTCAGGATTTGAAG	NA	NA	NA	NA
>prophage 13
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	4289048	4338089	4867363	transposase,integrase	Salmonella_phage(16.67%)	43	4280591:4280608	4326709:4326726
4280591:4280608	attL	CTGACTTCAGTGACTGAA	NA	NA	NA	NA
VEA96377.1|4289048_4290068_-|transposase	transposase IS116	transposase	NA	NA	NA	NA
VEA96379.1|4290158_4291913_-	nucleotide-binding protein	NA	NA	NA	NA	NA
VEA96381.1|4291930_4292524_-	pilus assembly protein	NA	NA	NA	NA	NA
VEA96383.1|4292510_4293791_-	putative pilus assembly protein	NA	NA	NA	NA	NA
VEA96385.1|4293792_4295475_-	lipoprotein	NA	NA	NA	NA	NA
VEA96387.1|4295486_4295924_-	putative exported protein	NA	NA	NA	NA	NA
VEA96388.1|4295926_4297150_-	putative exported protein	NA	NA	NA	NA	NA
VEA96391.1|4297245_4297473_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96393.1|4297666_4298995_+|transposase	Insertion element 4 transposase N-terminal	transposase	NA	NA	NA	NA
VEA96395.1|4299065_4299497_-	Domain of uncharacterised function DUF29	NA	A0A0K2QQ08	Ralstonia_phage	46.3	4.8e-26
VEA96397.1|4299578_4300043_-	single-stranded DNA-binding protein	NA	A0A1B0VAF5	Salmonella_phage	67.3	6.3e-56
VEA96399.1|4300055_4300274_-	Uncharacterised protein	NA	A0A1B1IVH0	uncultured_Mediterranean_phage	51.9	3.1e-05
VEA96401.1|4300354_4300804_-	Periplasmic protein TonB	NA	NA	NA	NA	NA
VEA96403.1|4301470_4303462_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.6	9.3e-40
VEA96405.1|4303500_4304343_-	integrating conjugative element protein	NA	NA	NA	NA	NA
VEA96407.1|4304602_4305889_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96409.1|4306025_4306274_-	Uncharacterised protein	NA	A0A286S1P6	Klebsiella_phage	38.7	1.1e-06
VEA96411.1|4306273_4306831_-	Protein of uncharacterised function (DUF2857)	NA	NA	NA	NA	NA
VEA96414.1|4306915_4307638_-	Protein of uncharacterised function (DUF2786)	NA	NA	NA	NA	NA
VEA96416.1|4307624_4307888_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96418.1|4307884_4308109_-	protein YbiI	NA	NA	NA	NA	NA
VEA96420.1|4308098_4309898_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
VEA96422.1|4309890_4311255_-	DNA helicase	NA	A0A1B0VG30	Salmonella_phage	51.3	3.1e-111
VEA96424.1|4311251_4311515_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96426.1|4311511_4311880_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96428.1|4311876_4312908_-	Chromosome partitioning protein	NA	NA	NA	NA	NA
VEA96431.1|4313203_4314463_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	44.3	6.2e-82
VEA96434.1|4314671_4315229_+	nucleotide binding protein	NA	A0A219VHB7	Ochrobactrum_phage	53.5	1.0e-20
VEA96436.1|4315445_4316327_-	DNA-binding protein	NA	NA	NA	NA	NA
VEA96438.1|4317262_4317478_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	63.4	2.0e-17
VEA96440.1|4317474_4317936_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96442.1|4318381_4320355_+	Predicted ATPase	NA	NA	NA	NA	NA
VEA96444.1|4320509_4321127_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96446.1|4321126_4322188_+	nucleotidyltransferase	NA	NA	NA	NA	NA
VEA96448.1|4322375_4324430_+	ATPase	NA	NA	NA	NA	NA
VEA96450.1|4324443_4325466_+|transposase	putative transposase	transposase	A0A2L1IVA1	Escherichia_phage	90.9	1.4e-185
VEA96452.1|4325465_4326245_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	96.9	6.0e-136
VEA96455.1|4326305_4326662_+	ATPase	NA	NA	NA	NA	NA
VEA96457.1|4326665_4327982_+	ATPase AAA	NA	NA	NA	NA	NA
4326709:4326726	attR	TTCAGTCACTGAAGTCAG	NA	NA	NA	NA
VEA96459.1|4327978_4330177_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
VEA96461.1|4330188_4334883_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96463.1|4334879_4337111_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96466.1|4337711_4338089_+|transposase	transposase IS3	transposase	S5WIU1	Leptospira_phage	35.3	7.7e-12
>prophage 14
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	4867363	4606861	4651987	4867363	transposase,portal,integrase,protease	Salmonella_phage(22.22%)	49	4622464:4622480	4656197:4656213
VEA96885.1|4606861_4607227_+|portal	phage portal pbsx family protein	portal	Q6K1J0	Salmonella_virus	88.9	1.4e-47
VEA96887.1|4607349_4607640_+|portal	phage portal pbsx family protein	portal	S4TNX7	Salmonella_phage	91.8	3.2e-26
VEA96889.1|4607754_4608045_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96891.1|4608353_4608650_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96893.1|4609996_4610755_-	Putative diguanylate phosphodi esterase (EALdomain)	NA	NA	NA	NA	NA
VEA96895.1|4610871_4615509_-	ShdA	NA	NA	NA	NA	NA
VEA96897.1|4615640_4616003_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96899.1|4616188_4616668_-	Transcription antitermination protein nusG	NA	NA	NA	NA	NA
VEA96901.1|4616797_4617070_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96903.1|4617165_4617603_-	Positive regulator GrlA	NA	NA	NA	NA	NA
VEA96905.1|4617731_4618094_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96907.1|4620292_4621237_+|transposase	transposase IS4 family protein	transposase	S5FM71	Shigella_phage	63.4	1.3e-108
VEA96909.1|4621610_4622564_-	ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	2.4e-17
4622464:4622480	attL	CCAATTGTCATTTCATT	NA	NA	NA	NA
VEA96911.1|4622995_4623703_-	Lactococcin-G-processing and transport ATP-binding protein LagD	NA	NA	NA	NA	NA
VEA96913.1|4623711_4624299_-	putative toxin secretion membrane fusionprotein	NA	NA	NA	NA	NA
VEA96915.1|4624384_4624657_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96917.1|4625071_4625632_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96919.1|4626063_4626783_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VEA96921.1|4626779_4627205_-	Positive regulator GrlA	NA	NA	NA	NA	NA
VEA96923.1|4628413_4628689_+|integrase	Puataive integrase	integrase	S4TP66	Salmonella_phage	85.5	8.9e-26
VEA96925.1|4629172_4629673_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA	NA
VEA96931.1|4629823_4630522_+	two-component response regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
VEA96933.1|4630518_4631892_+	two-component sensor kinase protein	NA	W8CYF6	Bacillus_phage	25.6	1.1e-15
VEA96935.1|4631925_4632600_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
VEA96937.1|4632751_4633432_+	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
VEA96939.1|4633543_4633729_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96941.1|4633739_4634360_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.4	2.4e-63
VEA96943.1|4634649_4635684_+	rhamnose-proton symporter	NA	NA	NA	NA	NA
VEA96945.1|4635680_4636529_-	transcriptional activator RhaR	NA	NA	NA	NA	NA
VEA96947.1|4636635_4637472_-	L-rhamnose operon regulatory protein	NA	NA	NA	NA	NA
VEA96948.1|4637795_4639265_+	rhamnulokinase	NA	NA	NA	NA	NA
VEA96949.1|4639261_4640521_+	L-rhamnose isomerase	NA	NA	NA	NA	NA
VEA96951.1|4640599_4641424_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA	NA
VEA96953.1|4641435_4642584_+	Lactaldehyde reductase	NA	NA	NA	NA	NA
VEA96955.1|4642580_4642895_+	L-rhamnose mutarotase	NA	NA	NA	NA	NA
VEA96957.1|4642937_4643486_-	putative DNA-binding protein	NA	NA	NA	NA	NA
VEA96959.1|4643586_4644246_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
VEA96962.1|4644245_4644569_+	Inner membrane protein	NA	NA	NA	NA	NA
VEA96964.1|4644683_4645241_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96966.1|4645237_4645675_-	sugar phosphotransferase	NA	NA	NA	NA	NA
VEA96968.1|4645698_4645968_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA96970.1|4646026_4646869_-	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
VEA96972.1|4646855_4648223_-	membrane permease	NA	NA	NA	NA	NA
VEA96974.1|4648215_4648530_-	sugar phosphotransferase component II B	NA	NA	NA	NA	NA
VEA96976.1|4648541_4649621_-	6-phosphofructokinase	NA	NA	NA	NA	NA
VEA96978.1|4649831_4650494_+|protease	metalloprotease	protease	NA	NA	NA	NA
VEA96980.1|4650536_4651106_+	putative frv operon regulatory protein	NA	NA	NA	NA	NA
VEA96982.1|4651315_4651528_-	Protein of uncharacterised function (DUF1471)	NA	NA	NA	NA	NA
VEA96984.1|4651846_4651987_-|transposase	transposase	transposase	U5P4I9	Shigella_phage	76.9	7.2e-08
4656197:4656213	attR	AATGAAATGACAATTGG	NA	NA	NA	NA
