The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134158	Salmonella enterica subsp. enterica serovar Goldcoast strain NCTC13175 genome assembly, chromosome: 1	4677748	1675600	1684771	4677748	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
VEA86146.1|1675600_1676548_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
VEA86147.1|1676531_1677263_+	putative permease transmembrane component	NA	NA	NA	NA	NA
VEA86148.1|1677243_1677351_-	membrane protein	NA	NA	NA	NA	NA
VEA86149.1|1677410_1678142_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
VEA86150.1|1678364_1680050_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
VEA86151.1|1680046_1680766_+	two-component system response regulator	NA	NA	NA	NA	NA
VEA86152.1|1680812_1681280_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	1.8e-74
VEA86153.1|1681336_1681867_-	lipoprotein	NA	NA	NA	NA	NA
VEA86154.1|1682038_1682497_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
VEA86155.1|1682737_1684771_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.4e-54
>prophage 2
LR134158	Salmonella enterica subsp. enterica serovar Goldcoast strain NCTC13175 genome assembly, chromosome: 1	4677748	1753069	1763577	4677748		Enterobacteria_phage(37.5%)	11	NA	NA
VEA86212.1|1753069_1754473_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	27.2	4.0e-21
VEA86213.1|1754650_1755544_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
VEA86214.1|1755920_1757006_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	1.0e-101
VEA86215.1|1757005_1757905_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
VEA86216.1|1757952_1758831_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
VEA86217.1|1758834_1759383_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
VEA86218.1|1759388_1760363_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
VEA86219.1|1760378_1761152_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
VEA86220.1|1761156_1761633_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	32.6	6.3e-11
VEA86221.1|1761607_1762237_+	CDP-glucose 4,6-dehydratase	NA	NA	NA	NA	NA
VEA86222.1|1762263_1763577_+	lipopolysaccharide biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 3
LR134158	Salmonella enterica subsp. enterica serovar Goldcoast strain NCTC13175 genome assembly, chromosome: 1	4677748	2224651	2232115	4677748	transposase	Escherichia_phage(42.86%)	9	NA	NA
VEA86684.1|2224651_2225110_+|transposase	transposase for IS200	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
VEA86685.1|2225625_2226750_+	bacteriophage protein	NA	NA	NA	NA	NA
VEA86686.1|2227696_2228110_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
VEA86687.1|2228126_2228855_+	Pertussis toxin, subunit 1 subfamily	NA	A0A0U2KD26	Escherichia_phage	52.9	4.1e-62
VEA86688.1|2229046_2229589_+	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
VEA86689.1|2229736_2230114_-	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
VEA86690.1|2230186_2230996_-	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	50.0	4.6e-62
VEA86691.1|2231493_2231658_+|transposase	transposase	transposase	NA	NA	NA	NA
VEA86692.1|2231875_2232115_-	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 4
LR134158	Salmonella enterica subsp. enterica serovar Goldcoast strain NCTC13175 genome assembly, chromosome: 1	4677748	3311688	3371052	4677748	tRNA,transposase,protease	Bacillus_phage(25.0%)	52	NA	NA
VEA87727.1|3311688_3312606_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
VEA87728.1|3312602_3313055_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
VEA87729.1|3313055_3313472_-	copper efflux regulator	NA	NA	NA	NA	NA
VEA87730.1|3313581_3315003_+	Lead cadmium zinc and mercury transporting ATPase	NA	NA	NA	NA	NA
VEA87731.1|3315041_3316082_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	40.7	4.2e-52
VEA87732.1|3316235_3317063_+	Secreted protein	NA	NA	NA	NA	NA
VEA87733.1|3318144_3318624_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
VEA87734.1|3318740_3320393_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
VEA87735.1|3320565_3321786_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
VEA87736.1|3321797_3321923_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA87737.1|3322000_3323677_+	transport protein	NA	NA	NA	NA	NA
VEA87738.1|3323725_3325030_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
VEA87739.1|3325182_3326154_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
VEA87740.1|3326150_3327113_-	ferrochelatase	NA	NA	NA	NA	NA
VEA87741.1|3327341_3327986_-	adenylate kinase	NA	NA	NA	NA	NA
VEA87742.1|3328459_3330334_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.3e-115
VEA87743.1|3330444_3331050_-	recombination protein RecR	NA	NA	NA	NA	NA
VEA87744.1|3331049_3331379_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
VEA87745.1|3333466_3334018_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
VEA87746.1|3334170_3334548_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
VEA87747.1|3334628_3335144_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
VEA87748.1|3335157_3335325_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA87749.1|3335394_3336330_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	52.1	1.6e-63
VEA87750.1|3336371_3339734_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA87751.1|3339852_3340506_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
VEA87752.1|3340647_3341841_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
VEA87753.1|3341863_3345013_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA87754.1|3345508_3345883_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
VEA87755.1|3345910_3346129_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
VEA87756.1|3346307_3346859_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VEA87757.1|3346976_3347447_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA87758.1|3347644_3347908_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEA87759.1|3348132_3349683_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
VEA87760.1|3349991_3350303_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
VEA87761.1|3350335_3350905_-	lipoprotein	NA	NA	NA	NA	NA
VEA87762.1|3351119_3351980_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
VEA87763.1|3352079_3353366_-	ammonium transporter	NA	NA	NA	NA	NA
VEA87764.1|3353397_3353736_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
VEA87765.1|3353948_3355730_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	4.1e-39
VEA87766.1|3355722_3357495_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
VEA87767.1|3357535_3357994_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA87768.1|3358106_3359162_+	lyase	NA	NA	NA	NA	NA
VEA87769.1|3359211_3360030_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
VEA87770.1|3360130_3361831_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEA87771.1|3361895_3362591_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	1.2e-87
VEA87772.1|3362696_3363095_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
VEA87773.1|3363198_3363573_-	competence protein ComEA	NA	NA	NA	NA	NA
VEA87774.1|3363722_3365594_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEA87775.1|3365884_3366157_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
VEA87776.1|3366365_3368720_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
VEA87777.1|3368905_3370177_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
VEA87778.1|3370428_3371052_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 5
LR134158	Salmonella enterica subsp. enterica serovar Goldcoast strain NCTC13175 genome assembly, chromosome: 1	4677748	4176899	4181402	4677748		Escherichia_phage(100.0%)	6	NA	NA
VEA88534.1|4176899_4177493_-	Twin-arginine leader-binding protein DmsD	NA	A0A077SLS7	Escherichia_phage	73.0	1.5e-81
VEA88535.1|4177568_4178342_-	dimethyl sulfoxide reductase subunit C	NA	A0A077SK59	Escherichia_phage	79.8	7.9e-104
VEA88536.1|4178334_4178961_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	92.3	2.9e-120
VEA88537.1|4178974_4180237_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	81.6	1.0e-209
VEA88538.1|4180206_4181178_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	83.4	6.1e-146
VEA88539.1|4181174_4181402_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	66.7	2.9e-06
>prophage 6
LR134158	Salmonella enterica subsp. enterica serovar Goldcoast strain NCTC13175 genome assembly, chromosome: 1	4677748	4268505	4315598	4677748	tRNA,tail,plate	Burkholderia_phage(42.86%)	48	NA	NA
VEA88603.1|4268505_4269504_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
VEA88604.1|4269591_4270902_-	conjugative transfer protein	NA	NA	NA	NA	NA
VEA88605.1|4271148_4271664_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
VEA88606.1|4271762_4271975_-	stress-response protein	NA	NA	NA	NA	NA
VEA88607.1|4271993_4272122_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA88608.1|4272103_4273429_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
VEA88609.1|4273606_4274215_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
VEA88610.1|4274323_4274692_-	diacylglycerol kinase	NA	NA	NA	NA	NA
VEA88611.1|4274862_4277283_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
VEA88612.1|4277381_4278254_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
VEA88613.1|4278267_4278765_-	chorismate lyase	NA	NA	NA	NA	NA
VEA88614.1|4278945_4279863_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
VEA88615.1|4280026_4281382_-	maltoporin	NA	NA	NA	NA	NA
VEA88616.1|4281470_4282580_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
VEA88617.1|4282941_4284132_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
VEA88618.1|4284263_4285808_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
VEA88619.1|4285822_4286713_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
VEA88620.1|4286878_4287289_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
VEA88621.1|4287431_4289528_-	lipoprotein	NA	NA	NA	NA	NA
VEA88622.1|4289527_4290265_-	putative lipoprotein	NA	NA	NA	NA	NA
VEA88623.1|4290261_4290900_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
VEA88624.1|4290963_4291209_-	YjbE secreted protein	NA	NA	NA	NA	NA
VEA88625.1|4291649_4293299_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
VEA88626.1|4293686_4295036_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
VEA88627.1|4295166_4295514_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
VEA88628.1|4296090_4296378_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
VEA88629.1|4296609_4296987_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	62.1	1.5e-39
VEA88630.1|4296999_4297314_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
VEA88631.1|4297472_4297928_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA88632.1|4297924_4298122_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	5.1e-07
VEA88633.1|4298111_4299539_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	71.2	1.4e-194
VEA88634.1|4299538_4300063_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
VEA88635.1|4300114_4300432_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA88636.1|4300616_4302983_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	30.7	2.1e-67
VEA88637.1|4302982_4303936_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
VEA88638.1|4303935_4304145_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
VEA88639.1|4304132_4305176_+	gp21	NA	Q6QIA2	Burkholderia_phage	45.3	8.5e-77
VEA88640.1|4305185_4305908_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
VEA88641.1|4306594_4307524_+	bactoprenol glucosyl transferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
VEA88642.1|4307523_4309071_+	membrane protein	NA	B9UDL6	Salmonella_phage	30.1	3.8e-49
VEA88643.1|4309051_4309174_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA88644.1|4309234_4309594_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
VEA88645.1|4309584_4310700_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.7	9.0e-101
VEA88646.1|4310692_4311322_+|tail	tail fiber protein	tail	Q6QI98	Burkholderia_phage	55.6	1.8e-21
VEA88647.1|4311324_4313070_+|tail	tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	5.5e-52
VEA88648.1|4313074_4313680_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA88649.1|4313676_4314132_+	cytoplasmic protein	NA	NA	NA	NA	NA
VEA88650.1|4314869_4315598_+	cytoplasmic protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
