assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	1	642190-642441	1	PILER-CR	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA|180aa|down_1|LR134157.1_643948_644488_-	NA|158aa|up_9|LR134157.1_631764_632238_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|LR134157.1_632260_633541_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|LR134157.1_633789_634599_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|LR134157.1_634653_635118_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|LR134157.1_635117_635453_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|LR134157.1_635601_637173_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|LR134157.1_637547_638882_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|LR134157.1_638897_639668_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|LR134157.1_639697_640588_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|LR134157.1_640684_641830_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|LR134157.1_642739_643927_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|LR134157.1_643948_644488_-	NA	NA|313aa|down_2|LR134157.1_645277_646216_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_3|LR134157.1_646314_647304_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_4|LR134157.1_647325_648657_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_5|LR134157.1_648682_649891_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_6|LR134157.1_649924_652219_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_7|LR134157.1_652232_652622_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_8|LR134157.1_652693_654058_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_9|LR134157.1_654332_655664_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	2	1000225-1001045	2,1,1,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	7,13,13,7	13	Unclear	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|172aa|up_9|LR134157.1_989058_989574_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|LR134157.1_989630_990932_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|LR134157.1_990979_993214_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|LR134157.1_993291_993540_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|LR134157.1_993539_993875_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|LR134157.1_993945_994737_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LR134157.1_994964_996602_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LR134157.1_996689_997988_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|LR134157.1_998047_998920_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|LR134157.1_999213_999885_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134157.1_1001683_1003162_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|461aa|down_1|LR134157.1_1003188_1004571_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134157.1_1004785_1005571_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134157.1_1005640_1007095_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134157.1_1007116_1008526_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134157.1_1008503_1009283_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134157.1_1009279_1010140_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|100aa|down_7|LR134157.1_1010287_1010587_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|424aa|down_8|LR134157.1_1011134_1012406_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|LR134157.1_1012483_1012849_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	3	1026599-1027603	4,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	14,16,16	16	TypeI-E	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|571aa|up_9|LR134157.1_1014963_1016676_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134157.1_1016749_1017484_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|LR134157.1_1017842_1020509_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_6|LR134157.1_1020923_1022276_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|LR134157.1_1022424_1022907_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|LR134157.1_1022919_1024011_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|LR134157.1_1024013_1024688_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|LR134157.1_1024674_1025274_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|LR134157.1_1025289_1026207_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|LR134157.1_1026208_1026493_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134157.1_1027623_1028661_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134157.1_1028912_1029821_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134157.1_1029822_1031250_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134157.1_1031249_1031855_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134157.1_1031904_1032228_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134157.1_1032421_1032733_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134157.1_1032751_1033462_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134157.1_1033461_1033941_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134157.1_1033937_1034987_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134157.1_1034967_1035729_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	4	1556021-1556138	3	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|300aa|up_9|LR134157.1_1545504_1546404_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134157.1_1546596_1547787_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134157.1_1547783_1549043_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|LR134157.1_1549032_1550661_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134157.1_1550933_1552292_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134157.1_1552296_1553373_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134157.1_1553414_1553621_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134157.1_1553835_1554486_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134157.1_1554539_1554794_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134157.1_1554793_1555924_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|97aa|down_0|LR134157.1_1556157_1556448_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|567aa|down_1|LR134157.1_1556419_1558120_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|35aa|down_2|LR134157.1_1558340_1558445_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_3|LR134157.1_1559140_1562893_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_4|LR134157.1_1563020_1563743_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_5|LR134157.1_1563889_1566517_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|266aa|down_6|LR134157.1_1566665_1567463_+	PRK11410, PRK11410, hypothetical protein; Provisional	NA|289aa|down_7|LR134157.1_1567487_1568354_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_8|LR134157.1_1568350_1568974_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1026aa|down_9|LR134157.1_1569117_1572195_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	6	3013716-3013799	5	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|431aa|up_9|LR134157.1_2998616_2999909_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|LR134157.1_2999999_3001343_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|LR134157.1_3001353_3001965_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1343aa|up_6|LR134157.1_3002119_3006148_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|LR134157.1_3006282_3006777_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|LR134157.1_3007321_3008287_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|LR134157.1_3008409_3010176_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|LR134157.1_3010176_3011898_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|LR134157.1_3011939_3012644_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|LR134157.1_3012928_3013147_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|497aa|down_0|LR134157.1_3014010_3015501_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|268aa|down_1|LR134157.1_3015484_3016288_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_2|LR134157.1_3016318_3016639_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_3|LR134157.1_3016962_3017187_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|670aa|down_4|LR134157.1_3017197_3019207_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|150aa|down_5|LR134157.1_3019203_3019653_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|77aa|down_6|LR134157.1_3019627_3019858_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|56aa|down_7|LR134157.1_3019829_3019997_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|76aa|down_8|LR134157.1_3020077_3020305_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_9|LR134157.1_3020437_3021430_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	7	3148575-3148719	6	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA|56aa|up_2|LR134157.1_3145616_3145784_+,NA	NA|72aa|up_9|LR134157.1_3141275_3141491_-	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|244aa|up_8|LR134157.1_3141678_3142410_-	PRK09940, PRK09940, transcriptional regulator YdeO; Provisional	NA|251aa|up_7|LR134157.1_3142761_3143514_-	COG3272, COG3272, Uncharacterized conserved protein [Function unknown]	NA|139aa|up_6|LR134157.1_3143914_3144331_+	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional	NA|98aa|up_5|LR134157.1_3144341_3144635_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|92aa|up_4|LR134157.1_3144763_3145039_-	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|143aa|up_3|LR134157.1_3145104_3145533_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_2|LR134157.1_3145616_3145784_+	NA	NA|231aa|up_1|LR134157.1_3146398_3147091_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|LR134157.1_3147225_3148509_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|291aa|down_0|LR134157.1_3148742_3149615_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|444aa|down_1|LR134157.1_3149673_3151005_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_2|LR134157.1_3151187_3152621_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_3|LR134157.1_3152696_3153749_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_4|LR134157.1_3153932_3154886_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_5|LR134157.1_3154926_3155922_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_6|LR134157.1_3156076_3156895_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_7|LR134157.1_3156895_3157954_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_8|LR134157.1_3157956_3158646_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|172aa|down_9|LR134157.1_3158645_3159161_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	8	3398898-3398994	7	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|98aa|up_9|LR134157.1_3391534_3391828_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|92aa|up_8|LR134157.1_3391956_3392232_-	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|289aa|up_7|LR134157.1_3392618_3393485_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134157.1_3393486_3393699_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134157.1_3393806_3394328_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134157.1_3394363_3395749_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134157.1_3395922_3396417_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134157.1_3396419_3397142_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134157.1_3397259_3397769_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134157.1_3397765_3398833_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134157.1_3399027_3399921_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134157.1_3399917_3400733_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134157.1_3400743_3402003_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|491aa|down_3|LR134157.1_3402012_3403485_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|92aa|down_4|LR134157.1_3403544_3403820_+	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|98aa|down_5|LR134157.1_3403948_3404242_+	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|278aa|down_6|LR134157.1_3404176_3405010_-	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase	NA|259aa|down_7|LR134157.1_3405109_3405886_-	PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional	NA|594aa|down_8|LR134157.1_3405898_3407680_-	PRK11269, PRK11269, glyoxylate carboligase; Provisional	NA|272aa|down_9|LR134157.1_3407769_3408585_-	PRK10163, PRK10163, HTH-type transcriptional repressor AllR
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	9	3531143-3531287	8	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|194aa|up_9|LR134157.1_3517442_3518024_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_8|LR134157.1_3518028_3519846_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_7|LR134157.1_3520001_3521375_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|443aa|up_6|LR134157.1_3521442_3522771_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_5|LR134157.1_3523177_3524473_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_4|LR134157.1_3524530_3525220_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|85aa|up_3|LR134157.1_3525409_3525664_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|324aa|up_2|LR134157.1_3525641_3526613_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|LR134157.1_3526609_3529756_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|423aa|up_0|LR134157.1_3529797_3531066_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|79aa|down_0|LR134157.1_3531310_3531547_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|106aa|down_1|LR134157.1_3531759_3532077_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|90aa|down_2|LR134157.1_3532078_3532348_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|118aa|down_3|LR134157.1_3532492_3532846_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|102aa|down_4|LR134157.1_3532848_3533154_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|94aa|down_5|LR134157.1_3533418_3533700_-	pfam10971, DUF2773, Protein of unknown function (DUF2773)	NA|95aa|down_6|LR134157.1_3533906_3534191_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_7|LR134157.1_3534262_3534940_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_8|LR134157.1_3535197_3535389_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_9|LR134157.1_3535438_3535963_-	PRK03731, aroL, shikimate kinase AroL
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	10	3564483-3564626	9	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	ACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|64aa|up_9|LR134157.1_3557025_3557217_+	TIGR04001, thiol_BshB1, bacillithiol biosynthesis deacetylase BshB1	NA|97aa|up_8|LR134157.1_3557226_3557517_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|292aa|up_7|LR134157.1_3557530_3558406_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|258aa|up_6|LR134157.1_3558985_3559759_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_5|LR134157.1_3559944_3560220_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|112aa|up_4|LR134157.1_3560264_3560600_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|276aa|up_3|LR134157.1_3560538_3561366_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|LR134157.1_3561458_3562292_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|LR134157.1_3562516_3563056_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|LR134157.1_3563157_3564369_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_0|LR134157.1_3564746_3565760_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|LR134157.1_3565756_3566707_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|LR134157.1_3566703_3567513_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|LR134157.1_3567522_3568389_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|LR134157.1_3568406_3569351_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|79aa|down_5|LR134157.1_3569352_3569589_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|485aa|down_6|LR134157.1_3569563_3571018_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_7|LR134157.1_3571094_3572042_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|364aa|down_8|LR134157.1_3572109_3573201_+	PRK09526, lacI, lac repressor; Reviewed	NA|1025aa|down_9|LR134157.1_3573323_3576398_+	PRK09525, lacZ, beta-galactosidase
GCA_900635685.1_32407_D01	LR134157	Escherichia coli strain NCTC11105 genome assembly, chromosome: 1	11	4092126-4092275	10	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA|556aa|down_7|LR134157.1_4099375_4101043_-	NA|340aa|up_9|LR134157.1_4080317_4081337_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|LR134157.1_4081340_4081904_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|LR134157.1_4082120_4083152_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|LR134157.1_4083175_4083940_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|LR134157.1_4084003_4085323_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|LR134157.1_4085389_4086388_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|LR134157.1_4086465_4087968_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|LR134157.1_4088128_4089211_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|LR134157.1_4089210_4090311_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|LR134157.1_4090577_4092089_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|LR134157.1_4092442_4092886_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|530aa|down_1|LR134157.1_4092885_4094475_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|434aa|down_2|LR134157.1_4094440_4095742_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_3|LR134157.1_4095797_4096994_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_4|LR134157.1_4097186_4097690_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_5|LR134157.1_4097735_4098152_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|303aa|down_6|LR134157.1_4098313_4099222_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|556aa|down_7|LR134157.1_4099375_4101043_-	NA	NA|151aa|down_8|LR134157.1_4101165_4101618_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|241aa|down_9|LR134157.1_4101634_4102357_-	COG1309, AcrR, Transcriptional regulator [Transcription]
