The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	1639866	1656123	4952084		Salmonella_phage(35.29%)	28	NA	NA
VEA60258.1|1639866_1640448_-	KilA, N- domain-containing protein	NA	I6R977	Salmonella_phage	61.9	1.0e-31
VEA60259.1|1640733_1641912_-	Integrase	NA	A0A2D1GN00	Marinobacter_phage	30.8	2.5e-32
VEA60260.1|1641917_1642124_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60261.1|1642188_1644003_-	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	23.5	1.7e-08
VEA60262.1|1644013_1644235_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60263.1|1644310_1644454_-	Bacteriophage lambda Kil protein	NA	NA	NA	NA	NA
VEA60264.1|1644474_1644630_-	Protein of uncharacterised function (DUF1391)	NA	NA	NA	NA	NA
VEA60265.1|1644852_1645206_-	transcriptional repressor DicA	NA	Q7Y5W5	Haemophilus_phage	52.5	1.5e-09
VEA60266.1|1645212_1645515_-	regulator	NA	K7PM35	Enterobacteria_phage	42.2	5.8e-10
VEA60267.1|1645703_1646138_+	phage regulatory protein	NA	A0A0M4QX15	Salmonella_phage	64.3	5.2e-20
VEA60268.1|1646171_1647233_+	replication protein	NA	A0A0U2RT81	Escherichia_phage	43.9	8.8e-29
VEA60269.1|1647225_1647663_+	replication P family protein	NA	A0A0U2JGJ0	Escherichia_phage	55.2	6.1e-45
VEA60270.1|1647672_1647942_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60271.1|1647928_1648147_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60272.1|1648143_1648578_+	Eae protein	NA	A0A0N6WGF1	Salmonella_phage	48.5	4.1e-17
VEA60273.1|1648611_1648785_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60274.1|1648784_1649081_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60275.1|1649077_1649446_+	Ead protein	NA	A0A2H4A316	Salmonella_phage	52.0	3.4e-12
VEA60276.1|1649450_1649660_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60277.1|1649728_1650454_+	prophage protein	NA	A0A0M4RCP6	Salmonella_phage	61.8	3.2e-83
VEA60278.1|1650465_1651425_+	hypothetical bacteriophage protein	NA	A0A075B8H2	Enterobacteria_phage	63.3	6.5e-39
VEA60279.1|1651551_1652181_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60280.1|1652349_1652514_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60281.1|1652626_1652917_+	Protein of uncharacterised function (DUF968)	NA	A0A1I9KFA7	Aeromonas_phage	51.6	4.8e-22
VEA60282.1|1652916_1653276_+	Holliday junction resolvase	NA	K7P6W0	Enterobacteria_phage	58.3	4.3e-36
VEA60283.1|1653272_1654673_+	C-5 cytosine-specific DNA methylase family protein	NA	A0A1B0V7P0	Salmonella_phage	52.4	2.0e-129
VEA60284.1|1654669_1655275_+	bacteriophage protein	NA	H9C175	Pectobacterium_phage	62.9	2.0e-70
VEA60285.1|1655544_1656123_+	antirepressor	NA	A0A2D1GLJ3	Escherichia_phage	50.8	3.8e-26
>prophage 2
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	1659234	1681122	4952084	tail,portal,protease,plate,head,capsid,terminase	Salmonella_phage(31.82%)	27	NA	NA
VEA60291.1|1659234_1659729_+	Lysozyme	NA	A0A0S2SYD0	Pseudomonas_phage	51.4	6.7e-32
VEA60292.1|1660059_1660578_+	phage protein	NA	A0A1V0E5P7	Salmonella_phage	70.9	3.5e-63
VEA60293.1|1660607_1660799_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60294.1|1660918_1661065_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60295.1|1661272_1662031_+	Putative methyl transferase	NA	Q775B4	Bordetella_phage	50.2	3.5e-64
VEA60296.1|1662601_1663072_+	bacteriophage protein	NA	Q8W632	Enterobacteria_phage	82.7	4.4e-73
VEA60297.1|1663068_1664799_+|terminase	terminase	terminase	Q8W631	Enterobacteria_phage	87.7	1.5e-307
VEA60298.1|1664795_1666034_+|portal	portal protein	portal	Q8HAD4	Salmonella_phage	71.0	4.4e-173
VEA60299.1|1666011_1666662_+|head,protease	pro-head protease	head,protease	Q8HAD3	Salmonella_phage	71.3	7.4e-87
VEA60300.1|1666672_1667881_+|capsid	capsid protein	capsid	M1FPN2	Enterobacteria_phage	63.2	1.2e-146
VEA60301.1|1667922_1668243_+	phage protein	NA	Q8SBH7	Shigella_phage	50.5	3.7e-23
VEA60302.1|1668239_1668671_+|head,tail	phage head-tail adaptor	head,tail	NA	NA	NA	NA
VEA60303.1|1668654_1669197_+	phage protein	NA	Q8HAC8	Salmonella_phage	54.5	1.7e-44
VEA60304.1|1669196_1669772_+	phage protein	NA	A0A192Y5U4	Salmonella_phage	56.5	1.0e-55
VEA60305.1|1669783_1671289_+|tail	tail sheath protein	tail	Q8HAC5	Salmonella_phage	56.3	1.0e-155
VEA60306.1|1671288_1671645_+|tail	tail protein	tail	U5P076	Shigella_phage	73.7	2.2e-45
VEA60307.1|1671641_1671932_+	phage protein	NA	NA	NA	NA	NA
VEA60308.1|1672067_1673867_+|tail	tail protein	tail	Q8W620	Enterobacteria_phage	39.5	1.3e-104
VEA60309.1|1673902_1675198_+	DNA circulation family protein	NA	S5FUX4	Shigella_phage	40.5	1.2e-85
VEA60310.1|1675194_1676280_+|plate	baseplate protein	plate	U5P0H6	Shigella_phage	51.4	2.0e-97
VEA60311.1|1676279_1677092_+|plate	baseplate assembly protein	plate	Q8W617	Enterobacteria_phage	54.8	3.1e-26
VEA60312.1|1677088_1677505_+	phage protein GP46	NA	A0A192Y6D0	Salmonella_phage	57.8	1.3e-39
VEA60313.1|1677497_1678559_+|tail	tail protein	tail	Q8W615	Enterobacteria_phage	57.3	5.2e-114
VEA60314.1|1678546_1679179_+|tail	phage tail protein	tail	O22003	Shigella_phage	51.8	5.5e-55
VEA60315.1|1679141_1679957_+|tail	phage tail fiber protein	tail	U5P0I1	Shigella_phage	60.0	2.2e-19
VEA60316.1|1679956_1680538_+|tail	tail assembly protein	tail	NA	NA	NA	NA
VEA60317.1|1680882_1681122_+	DNA polymerase V subunit	NA	K7P7N3	Enterobacteria_phage	56.4	5.9e-18
>prophage 3
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	1758484	1767052	4952084	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
VEA60392.1|1758484_1759432_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.9e-23
VEA60393.1|1759415_1760147_+	putative permease transmembrane component	NA	NA	NA	NA	NA
VEA60394.1|1760127_1760235_-	membrane protein	NA	NA	NA	NA	NA
VEA60395.1|1760294_1761026_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	88.4	1.2e-101
VEA60396.1|1761248_1762934_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.6	2.9e-276
VEA60397.1|1762930_1763650_+	two-component system response regulator	NA	NA	NA	NA	NA
VEA60398.1|1763696_1764167_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	91.0	6.1e-75
VEA60399.1|1764318_1764777_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.9	1.5e-54
VEA60400.1|1765018_1767052_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	5.6e-56
>prophage 4
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	1836946	1845808	4952084		Bacillus_phage(33.33%)	8	NA	NA
VEA60460.1|1836946_1837840_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
VEA60461.1|1838175_1839192_+	UDP-galactose-4-epimerase	NA	A0A2K9L1R4	Tupanvirus	47.7	3.1e-84
VEA60462.1|1839228_1840353_+	glycosyl transferase family 1	NA	NA	NA	NA	NA
VEA60463.1|1840400_1841519_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	65.2	1.5e-132
VEA60464.1|1841521_1842487_+	GDP-fucose synthetase	NA	D1LW79	Prochlorococcus_phage	50.5	2.7e-85
VEA60465.1|1842489_1842990_+	O-antigen biosynthesis protein	NA	NA	NA	NA	NA
VEA60466.1|1842982_1844431_+	mannose-1-phosphate guanyltransferase	NA	A0A1V0SH58	Hokovirus	32.3	2.7e-57
VEA60467.1|1844434_1845808_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	26.9	4.5e-33
>prophage 5
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	1914402	1979119	4952084	integrase	Stenotrophomonas_phage(37.5%)	55	1940733:1940748	1989310:1989325
VEA60543.1|1914402_1915665_+|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	40.6	1.8e-73
VEA60544.1|1915744_1916005_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
VEA60545.1|1916121_1916406_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
VEA60546.1|1916546_1916768_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	61.2	7.9e-17
VEA60547.1|1917633_1918515_+	DNA-binding protein	NA	NA	NA	NA	NA
VEA60548.1|1918640_1918760_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60549.1|1918749_1919379_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60550.1|1919383_1920091_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60551.1|1920643_1921183_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	31.0	2.1e-18
VEA60552.1|1922194_1926424_+	core protein	NA	S5W9C6	Leptospira_phage	27.2	2.4e-05
VEA60553.1|1926428_1926893_+	sugar tyrosine-protein kinase	NA	NA	NA	NA	NA
VEA60554.1|1927027_1929154_+	core protein	NA	S5W9C6	Leptospira_phage	30.6	4.2e-06
VEA60555.1|1929171_1929651_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60556.1|1929683_1930583_+	core protein	NA	S5W9C6	Leptospira_phage	28.6	3.0e-06
VEA60557.1|1930963_1931458_+	core protein	NA	NA	NA	NA	NA
VEA60558.1|1932383_1934897_+	Putative hydroxymethyl transferase	NA	NA	NA	NA	NA
VEA60559.1|1935158_1936613_+	AMP nucleosidase	NA	NA	NA	NA	NA
VEA60560.1|1936862_1937081_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60561.1|1937318_1937633_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60562.1|1937818_1939549_-	putative periplasmic protein	NA	NA	NA	NA	NA
VEA60563.1|1939605_1941774_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
1940733:1940748	attL	AAACACCACGAATTTT	NA	NA	NA	NA
VEA60564.1|1942096_1942501_-|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	45.2	4.4e-13
VEA60565.1|1943022_1943343_+	nitrogen assimilation regulatory protein (pseudogene)	NA	NA	NA	NA	NA
VEA60566.1|1943751_1944000_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60567.1|1944016_1944379_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60568.1|1944775_1944874_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60569.1|1945299_1945986_+	Putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA60570.1|1946634_1949232_+	autotransporter	NA	NA	NA	NA	NA
VEA60571.1|1949303_1949867_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60572.1|1950104_1950266_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60573.1|1950415_1950685_-	PerC transcriptional activator	NA	NA	NA	NA	NA
VEA60574.1|1951346_1953032_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEA60575.1|1953016_1953688_+	Protein of uncharacterised function (DUF1175)	NA	NA	NA	NA	NA
VEA60576.1|1953711_1958241_+	MG2 domain	NA	NA	NA	NA	NA
VEA60577.1|1958244_1959891_+	Predicted secreted protein	NA	NA	NA	NA	NA
VEA60578.1|1959897_1960668_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEA60579.1|1960792_1962289_-	dipeptidase	NA	NA	NA	NA	NA
VEA60580.1|1962546_1962645_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60581.1|1962600_1964565_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60582.1|1964513_1965707_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60583.1|1965779_1966010_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60584.1|1966621_1966879_+	Antitoxin PemI	NA	NA	NA	NA	NA
VEA60585.1|1966879_1967212_+	mRNA interferase PemK	NA	NA	NA	NA	NA
VEA60586.1|1968021_1968159_+	Tyrosine recombinase xerD	NA	NA	NA	NA	NA
VEA60587.1|1968159_1968789_+	Tyrosine recombinase xerD	NA	NA	NA	NA	NA
VEA60588.1|1969008_1969110_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60589.1|1969335_1970721_+	lysine decarboxylase	NA	NA	NA	NA	NA
VEA60590.1|1970755_1972252_+	AMP-binding protein	NA	NA	NA	NA	NA
VEA60591.1|1972367_1973330_+	transporter EamA family protein	NA	NA	NA	NA	NA
VEA60592.1|1973417_1974413_+	glyceraldehyde-3-phosphate dehydrogenase, type I	NA	NA	NA	NA	NA
VEA60593.1|1974562_1975441_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA60594.1|1976195_1976363_-|integrase	integrase	integrase	NA	NA	NA	NA
VEA60595.1|1976384_1977461_-|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.3	9.4e-63
VEA60596.1|1977798_1978596_-	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA60597.1|1978876_1979119_-|integrase	Putative integrase	integrase	NA	NA	NA	NA
1989310:1989325	attR	AAAATTCGTGGTGTTT	NA	NA	NA	NA
>prophage 6
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	2092852	2134136	4952084	holin,tail,protease,plate,head,integrase,terminase	Salmonella_phage(56.82%)	60	2089821:2089835	2094759:2094773
2089821:2089835	attL	CCACAGCGCGCTACT	NA	NA	NA	NA
VEA60719.1|2092852_2093932_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.7	1.5e-100
VEA60720.1|2094257_2094674_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60721.1|2094670_2096764_-	methyltransferase	NA	H9C171	Pectobacterium_phage	51.6	5.7e-197
2094759:2094773	attR	CCACAGCGCGCTACT	NA	NA	NA	NA
VEA60722.1|2096760_2097018_-	putative DNA methyl transferase	NA	NA	NA	NA	NA
VEA60723.1|2097111_2097297_-	Protein of uncharacterised function (DUF1187)	NA	NA	NA	NA	NA
VEA60724.1|2097343_2098174_-	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.3e-104
VEA60725.1|2098166_2100857_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	72.8	4.0e-118
VEA60726.1|2100997_2101333_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60727.1|2101408_2101615_-	prophage Kil protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
VEA60728.1|2101618_2101894_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60729.1|2102241_2102508_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60730.1|2102504_2102612_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60731.1|2102920_2103346_-	transcriptional regulator	NA	K7PH71	Enterobacterial_phage	56.3	9.3e-14
VEA60732.1|2103442_2103697_+	CRO	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
VEA60733.1|2103683_2104178_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
VEA60734.1|2104221_2105229_+	replication protein	NA	A0A0U2RT81	Escherichia_phage	67.3	6.9e-124
VEA60735.1|2105221_2105683_+	Replication protein 14	NA	A0A0U2JGJ0	Escherichia_phage	74.8	7.8e-67
VEA60736.1|2105696_2106092_+	DNA-binding protein	NA	A0A088CBK9	Shigella_phage	37.0	6.4e-17
VEA60737.1|2106088_2106361_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60738.1|2106915_2107218_+	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
VEA60739.1|2107391_2107829_+	prophage protein	NA	G8C7V3	Escherichia_phage	69.4	6.1e-53
VEA60740.1|2107825_2108020_+	Phage protein	NA	S4TNP0	Salmonella_phage	59.6	1.0e-12
VEA60741.1|2108001_2108298_+	Protein of uncharacterised function (DUF1364)	NA	K7P7Q1	Enterobacteria_phage	79.1	2.3e-35
VEA60742.1|2108294_2108849_+	putative bacteriophage protein	NA	A0A0U2S606	Escherichia_phage	64.6	1.7e-63
VEA60743.1|2108968_2109097_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60744.1|2109093_2109270_+	Probable mRNA interferase HicA	NA	A0A0M3LQ86	Mannheimia_phage	60.3	1.2e-12
VEA60745.1|2109320_2109728_+	Antitoxin HicB	NA	F1C593	Cronobacter_phage	63.0	8.0e-39
VEA60746.1|2109871_2110180_+|holin	phage-holin analog protein	holin	NA	NA	NA	NA
VEA60747.1|2110157_2110697_+	Phage endolysin R	NA	K7PLY1	Enterobacteria_phage	70.6	2.2e-76
VEA60748.1|2110797_2111259_+	Phage outer membrane lytic protein Rz, Endopeptidase	NA	M9NYX9	Enterobacteria_phage	56.2	2.5e-41
VEA60749.1|2111369_2111759_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60750.1|2111983_2112184_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60751.1|2112187_2112817_+|terminase	putative prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	84.7	9.0e-90
VEA60752.1|2112819_2114442_+	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	99.4	0.0e+00
VEA60753.1|2114441_2115908_+	Phage-associated protein	NA	A0A0M4S6U1	Salmonella_phage	99.4	4.4e-281
VEA60754.1|2115924_2116533_+	putative bacteriophage protein	NA	A0A0M4REK0	Salmonella_phage	88.1	6.4e-101
VEA60755.1|2116547_2117780_+|head,protease	head protein/prohead protease	head,protease	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
VEA60756.1|2117784_2118282_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	1.1e-87
VEA60757.1|2118293_2119235_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
VEA60758.1|2119276_2119645_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	99.2	4.3e-60
VEA60759.1|2119598_2120018_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	1.4e-70
VEA60760.1|2120014_2120569_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
VEA60761.1|2120555_2120945_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	99.2	2.1e-68
VEA60762.1|2120934_2121483_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	2.1e-79
VEA60763.1|2121486_2122632_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.8	1.0e-163
VEA60764.1|2122644_2123088_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	75.2	4.6e-56
VEA60765.1|2123091_2123544_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	79.2	5.7e-62
VEA60766.1|2123721_2125731_+	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	96.0	0.0e+00
VEA60767.1|2125730_2126306_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	96.9	8.5e-95
VEA60768.1|2126305_2126608_+	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	97.0	1.1e-50
VEA60769.1|2126610_2127684_+	bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	97.7	6.5e-189
VEA60770.1|2127680_2128028_+	putative secreted protein	NA	A0A0M4RTY3	Salmonella_phage	69.2	6.8e-23
VEA60771.1|2128034_2128565_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60772.1|2128567_2128741_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA60773.1|2128800_2129556_+|plate	baseplate protein	plate	A0A0M5M1K7	Salmonella_phage	92.8	1.0e-127
VEA60774.1|2129555_2129909_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	97.4	1.2e-59
VEA60775.1|2129909_2131109_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	96.7	8.0e-212
VEA60776.1|2131105_2131786_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	99.1	6.2e-129
VEA60777.1|2131785_2133315_+|tail	Gifsy-2 prophage tail fiber protein	tail	A0A1B0VFW4	Salmonella_phage	83.8	1.9e-80
VEA60778.1|2133311_2134136_+	UPF0189 protein LA_4133	NA	A0A0M4QWS3	Salmonella_phage	95.3	6.8e-154
>prophage 7
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	3017973	3029059	4952084	tRNA	Escherichia_phage(33.33%)	7	NA	NA
VEA62113.1|3017973_3018591_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.1	2.5e-76
VEA62114.1|3018601_3021046_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.7	7.0e-223
VEA62115.1|3021283_3021469_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	59.3	7.1e-11
VEA62116.1|3021551_3022577_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.9	1.9e-60
VEA62117.1|3022836_3024180_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	40.9	9.6e-81
VEA62118.1|3024189_3024801_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEA62119.1|3024943_3029059_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.9e-88
>prophage 8
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	3422436	3430069	4952084	transposase	Salmonella_phage(28.57%)	10	NA	NA
VEA62752.1|3422436_3423762_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.5	2.6e-102
VEA62754.1|3423976_3424831_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VEA62756.1|3424881_3425073_-	cation efflux system protein CusA	NA	NA	NA	NA	NA
VEA62758.1|3425103_3425526_+	sensor kinase CusS	NA	A0A1V0SGX0	Hokovirus	36.0	5.2e-09
VEA62760.1|3425725_3425980_+	copE1	NA	NA	NA	NA	NA
VEA62762.1|3426412_3426775_+	translocase	NA	A0A192Y6N5	Salmonella_phage	98.3	1.6e-59
VEA62764.1|3426771_3427689_+	bactoprenol glucosyl transferase	NA	A8CG95	Salmonella_phage	93.4	4.4e-162
VEA62765.1|3427685_3429110_+	GtrC	NA	F1C5A9	Cronobacter_phage	27.5	2.5e-34
VEA62766.1|3429211_3429385_+|transposase	transposase	transposase	F6MIM4	Haemophilus_phage	58.7	5.4e-05
VEA62767.1|3429649_3430069_+|transposase	transposase IS1113	transposase	A0A218MNI5	uncultured_virus	33.9	7.5e-08
>prophage 9
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	3502975	3561402	4952084	tRNA,transposase,protease	Bacillus_phage(25.0%)	52	NA	NA
VEA62857.1|3502975_3503893_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
VEA62859.1|3503889_3504342_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
VEA62860.1|3504342_3504759_-	copper efflux regulator	NA	NA	NA	NA	NA
VEA62861.1|3504868_3507370_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.0	8.8e-112
VEA62862.1|3508621_3509101_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
VEA62864.1|3509224_3510877_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
VEA62865.1|3511049_3512270_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
VEA62866.1|3512484_3514161_+	transport protein	NA	NA	NA	NA	NA
VEA62868.1|3514283_3515633_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
VEA62869.1|3515740_3516712_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.8	6.0e-16
VEA62870.1|3516708_3517671_-	ferrochelatase	NA	NA	NA	NA	NA
VEA62871.1|3517871_3518231_-	adenylate kinase	NA	NA	NA	NA	NA
VEA62873.1|3518227_3518455_-	adenylate kinase	NA	NA	NA	NA	NA
VEA62874.1|3518812_3520687_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.1	3.4e-116
VEA62875.1|3520797_3521403_-	recombination protein RecR	NA	NA	NA	NA	NA
VEA62876.1|3521402_3521684_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
VEA62878.1|3523818_3524370_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
VEA62879.1|3524522_3524900_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
VEA62880.1|3524980_3525496_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
VEA62881.1|3525509_3525677_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA62883.1|3525746_3526013_+	Transposase_31	NA	NA	NA	NA	NA
VEA62884.1|3526012_3526555_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	51.9	3.7e-39
VEA62885.1|3526721_3530084_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA62886.1|3530202_3530856_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
VEA62888.1|3530997_3532191_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
VEA62889.1|3532213_3535363_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA62890.1|3535860_3536235_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
VEA62891.1|3536262_3536481_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
VEA62893.1|3536659_3537211_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VEA62894.1|3537326_3537797_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA62895.1|3537997_3538258_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEA62897.1|3538482_3539103_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
VEA62899.1|3539144_3540032_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
VEA62901.1|3540340_3540652_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
VEA62902.1|3540684_3541254_-	lipoprotein	NA	NA	NA	NA	NA
VEA62903.1|3541468_3542329_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
VEA62904.1|3542428_3543715_-	ammonium transporter	NA	NA	NA	NA	NA
VEA62906.1|3543746_3544085_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
VEA62907.1|3544298_3546080_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	7.1e-39
VEA62909.1|3546072_3547845_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
VEA62910.1|3547885_3548344_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA62912.1|3548456_3549512_+	lyase	NA	NA	NA	NA	NA
VEA62914.1|3549561_3550380_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
VEA62915.1|3550480_3552181_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEA62917.1|3552245_3552941_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	2.7e-87
VEA62919.1|3553046_3553445_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
VEA62921.1|3553548_3553923_-	competence protein ComEA	NA	NA	NA	NA	NA
VEA62923.1|3554072_3555944_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEA62925.1|3556234_3556507_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
VEA62927.1|3556715_3559070_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	5.5e-225
VEA62929.1|3559255_3560527_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	2.5e-131
VEA62931.1|3560778_3561402_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 10
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	3868991	3913988	4952084	bacteriocin,tRNA	unidentified_phage(16.67%)	44	NA	NA
VEA63505.1|3868991_3869933_+|tRNA	glutamyl-Q tRNA(Asp) synthetase	tRNA	NA	NA	NA	NA
VEA63507.1|3870073_3871492_+	poly(A) polymerase	NA	H7BUW3	unidentified_phage	37.4	4.2e-26
VEA63509.1|3871488_3871968_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
VEA63511.1|3872215_3873010_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
VEA63513.1|3873122_3873977_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
VEA63515.1|3874069_3874450_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
VEA63517.1|3874776_3875394_+	fimbrial protein StkA	NA	NA	NA	NA	NA
VEA63519.1|3875472_3876216_+	fimbrial assembly chaperone protein StcB	NA	NA	NA	NA	NA
VEA63521.1|3876284_3878882_+	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VEA63523.1|3878916_3879507_+	fimbrial protein	NA	NA	NA	NA	NA
VEA63525.1|3879533_3880109_+	fimbrial protein	NA	NA	NA	NA	NA
VEA63527.1|3880184_3880781_+	fimbrial protein	NA	NA	NA	NA	NA
VEA63529.1|3880806_3881385_+	fimbrial protein	NA	NA	NA	NA	NA
VEA63531.1|3881403_3881994_+	fimbrial protein	NA	NA	NA	NA	NA
VEA63533.1|3881994_3883224_-	polysaccharide deacetylase domain protein	NA	NA	NA	NA	NA
VEA63535.1|3883285_3883726_-	PTS system IIA component	NA	NA	NA	NA	NA
VEA63537.1|3883830_3884601_-	ABC transporter	NA	NA	NA	NA	NA
VEA63539.1|3884597_3885524_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.2	1.5e-21
VEA63541.1|3885632_3886295_+	carbonic anhydrase	NA	NA	NA	NA	NA
VEA63543.1|3886352_3886889_-	Hypoxanthine-guanine phosphoribosyl transferase	NA	A0A218MMB5	uncultured_virus	33.1	7.8e-18
VEA63545.1|3887094_3889485_+	glucose dehydrogenase	NA	NA	NA	NA	NA
VEA63547.1|3889562_3891173_-	Blue copper oxidase CueO	NA	A0A0C6DWA2	Mamastrovirus	59.8	3.0e-20
VEA63549.1|3891335_3891722_+	lipoprotein, PulS/OutS family	NA	NA	NA	NA	NA
VEA63551.1|3891828_3892689_+	spermidine synthase	NA	NA	NA	NA	NA
VEA63553.1|3892709_3893504_+	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA	NA
VEA63555.1|3893533_3894301_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	35.7	2.2e-29
VEA63557.1|3894310_3895294_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
VEA63559.1|3895283_3896555_-	membrane protein	NA	NA	NA	NA	NA
VEA63561.1|3896551_3897505_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
VEA63786.1|3897739_3898102_-	protein YacL	NA	NA	NA	NA	NA
VEA63788.1|3898289_3900887_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
VEA63790.1|3901277_3902876_+	membrane protein	NA	NA	NA	NA	NA
VEA63792.1|3902888_3903680_+	probable secreted protein	NA	NA	NA	NA	NA
VEA63794.1|3903717_3904002_-	putative secreted protein	NA	NA	NA	NA	NA
VEA63796.1|3904337_3905762_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.1	1.2e-41
VEA63798.1|3905963_3907844_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
VEA63800.1|3907858_3910522_-	pyruvate dehydrogenase E1 component	NA	NA	NA	NA	NA
VEA63802.1|3910681_3911446_-	pyruvate dehydrogenase complex repressor	NA	NA	NA	NA	NA
VEA63804.1|3911897_3912188_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA63806.1|3912257_3912548_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA63807.1|3912617_3912908_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA63809.1|3912977_3913268_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA63811.1|3913337_3913628_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA63813.1|3913697_3913988_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 11
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4952084	4516325	4559133	4952084	tail,plate,tRNA	Burkholderia_phage(44.44%)	44	NA	NA
VEA64957.1|4516325_4517324_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
VEA64959.1|4517411_4518722_-	conjugative transfer protein	NA	NA	NA	NA	NA
VEA64961.1|4518968_4519484_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
VEA64963.1|4519583_4519796_-	stress-response protein	NA	NA	NA	NA	NA
VEA64965.1|4519814_4519943_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA64967.1|4519924_4521250_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
VEA64969.1|4521428_4522037_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
VEA64971.1|4522145_4522514_-	diacylglycerol kinase	NA	NA	NA	NA	NA
VEA64973.1|4522684_4525105_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
VEA64975.1|4525215_4526088_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
VEA64977.1|4526101_4526599_-	chorismate lyase	NA	NA	NA	NA	NA
VEA64979.1|4526779_4527697_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
VEA64981.1|4527860_4529219_-	maltoporin	NA	NA	NA	NA	NA
VEA64983.1|4529306_4530416_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
VEA64985.1|4530778_4531969_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
VEA64987.1|4532100_4533645_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
VEA64989.1|4533659_4534550_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
VEA64991.1|4534893_4536369_+	D-xylose transporter XylE	NA	NA	NA	NA	NA
VEA64993.1|4536413_4536824_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
VEA64995.1|4536965_4537265_-	lipoprotein	NA	NA	NA	NA	NA
VEA64997.1|4537239_4539063_-	lipoprotein	NA	NA	NA	NA	NA
VEA64999.1|4539062_4539800_-	putative lipoprotein	NA	NA	NA	NA	NA
VEA65001.1|4539796_4540435_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
VEA65003.1|4540498_4540744_-	YjbE secreted protein	NA	NA	NA	NA	NA
VEA65005.1|4541184_4542834_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
VEA65007.1|4543222_4544572_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
VEA65010.1|4544706_4545054_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
VEA65012.1|4545629_4545917_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	2.3e-16
VEA65014.1|4546293_4546524_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	65.8	3.8e-22
VEA65016.1|4546536_4546851_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	4.9e-20
VEA65018.1|4547010_4547466_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA65020.1|4547462_4547660_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	5.1e-07
VEA65022.1|4547649_4549065_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	70.0	8.9e-186
VEA65024.1|4549064_4549589_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	69.0	3.1e-67
VEA65026.1|4549640_4549958_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA65028.1|4550138_4552424_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	28.8	1.4e-68
VEA65030.1|4552423_4553242_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	53.1	3.6e-38
VEA65032.1|4553377_4553587_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
VEA65034.1|4553574_4554615_+	gp21	NA	A4JWL3	Burkholderia_virus	46.2	2.3e-74
VEA65036.1|4554624_4555347_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
VEA65038.1|4555444_4555804_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	1.4e-34
VEA65040.1|4555794_4556910_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	50.9	1.9e-98
VEA65042.1|4556902_4557535_+|tail	tail fiber protein	tail	Q6QI98	Burkholderia_phage	54.9	2.1e-22
VEA65044.1|4557537_4559133_+|tail	tail protein	tail	A0A0M3ULH6	Salmonella_phage	42.8	6.5e-52
