assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635655.1_31629_D01	LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	2	1003313-1004867	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACC	29,29,29,28	5	5	1003403-1003434|1003647-1003678|1004014-1004045|1004502-1004533|1004501-1004533	LR134154.1_1642221-1642252|LR134154.1_1672284-1672315|LR134154.1_1644089-1644120|LR134154.1_1663210-1663241|LR134154.1_1663209-1663241	I-E:I-E:I-E:I-E	22,25,25,22	25	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|164aa|up_9|LR134154.1_991859_992351_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|162aa|up_8|LR134154.1_992392_992878_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|167aa|up_7|LR134154.1_992877_993378_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|LR134154.1_993403_994177_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|882aa|up_5|LR134154.1_994189_996835_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|LR134154.1_996968_997556_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|LR134154.1_998161_998962_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LR134154.1_999189_1000827_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LR134154.1_1000909_1002208_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LR134154.1_1002344_1003016_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LR134154.1_1004964_1005762_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LR134154.1_1005851_1006214_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|403aa|down_2|LR134154.1_1006356_1007565_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|600aa|down_3|LR134154.1_1007964_1009764_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|LR134154.1_1009763_1011476_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|LR134154.1_1011584_1012319_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|LR134154.1_1012406_1013360_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|899aa|down_7|LR134154.1_1013743_1016440_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|down_8|LR134154.1_1016604_1016904_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_9|LR134154.1_1016913_1017255_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_900635655.1_31629_D01	LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	3	1023607-1025345	3,3,2,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAAC	29,29,29,27	2	2	1025285-1025316|1025289-1025322	LR134154.1_1649972-1650003|LR134154.1_1649970-1650003	I-E:I-E:I-E:I-E	26,28,28,26	28	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	cas3|899aa|up_9|LR134154.1_1013743_1016440_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|LR134154.1_1016604_1016904_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|LR134154.1_1016913_1017255_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|LR134154.1_1017610_1019146_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|209aa|up_5|LR134154.1_1019162_1019789_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|LR134154.1_1019811_1020870_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|LR134154.1_1020879_1021605_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|LR134154.1_1021604_1022309_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|LR134154.1_1022308_1023226_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134154.1_1023228_1023522_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LR134154.1_1025359_1026406_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134154.1_1026656_1027565_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LR134154.1_1027574_1029014_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134154.1_1029000_1029606_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134154.1_1029656_1029980_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134154.1_1030170_1030482_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134154.1_1030500_1031211_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134154.1_1031210_1031690_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134154.1_1031686_1032736_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134154.1_1032716_1033478_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635655.1_31629_D01	LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	4	2241398-2241731	5,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACC,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|230aa|up_9|LR134154.1_2227096_2227786_+	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|118aa|up_8|LR134154.1_2227812_2228166_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|422aa|up_7|LR134154.1_2228501_2229767_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_6|LR134154.1_2229767_2230418_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_5|LR134154.1_2230410_2232207_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|466aa|up_4|LR134154.1_2232545_2233943_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|LR134154.1_2234329_2238073_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|LR134154.1_2238069_2239605_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|LR134154.1_2239601_2240312_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|LR134154.1_2240311_2240989_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|LR134154.1_2243173_2244016_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|LR134154.1_2244066_2244525_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|170aa|down_2|LR134154.1_2244644_2245154_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|116aa|down_3|LR134154.1_2245194_2245542_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_4|LR134154.1_2245632_2246646_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_5|LR134154.1_2246848_2247757_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_6|LR134154.1_2247888_2248302_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_7|LR134154.1_2248963_2249581_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_8|LR134154.1_2249776_2252455_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_9|LR134154.1_2252931_2253579_+	PRK11111, PRK11111, YchE family NAAT transporter
