The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	1405	8115	4527628		Bacillus_phage(33.33%)	9	NA	NA
VEA29764.1|1405_2167_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	37.1	3.2e-33
VEA29766.1|2117_2507_+	DNA polymerase III subunit beta	NA	NA	NA	NA	NA
VEA29768.1|2654_3563_+	recF protein	NA	NA	NA	NA	NA
VEA29770.1|3760_3961_+	DNA gyrase subunit B	NA	A0A127AW23	Bacillus_phage	49.1	2.1e-08
VEA29772.1|3941_4295_+	DNA gyrase subunit B	NA	A0A141HRW8	Bacillus_phage	42.2	5.7e-17
VEA29774.1|4541_5072_+	DNA gyrase subunit B	NA	G4KKP9	Yersinia_phage	36.4	2.0e-13
VEA29776.1|5142_6177_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	27.1	5.4e-23
VEA29778.1|6183_6756_-	putative LysR-family transcriptioanl regulator	NA	NA	NA	NA	NA
VEA29780.1|7128_8115_-	mandelate racemase	NA	Q6A202	Oenococcus_phage	33.4	6.0e-40
>prophage 2
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	455006	494362	4527628	protease,tRNA	Oenococcus_phage(66.67%)	56	NA	NA
VEA31235.1|455006_455972_-|tRNA	tRNA-dihydrouridine synthase B	tRNA	NA	NA	NA	NA
VEA31238.1|456633_457515_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
VEA31241.1|457526_458978_-	sodium/pantothenate symporter	NA	NA	NA	NA	NA
VEA31244.1|458967_459210_-	Membrane protein	NA	NA	NA	NA	NA
VEA31247.1|459318_460332_-	biotin carboxylase	NA	NA	NA	NA	NA
VEA31250.1|460321_460669_-	biotin carboxylase	NA	NA	NA	NA	NA
VEA31253.1|460679_460892_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA	NA
VEA31256.1|460972_461152_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA	NA
VEA31259.1|461544_462096_-	Membrane protein YedZ	NA	NA	NA	NA	NA
VEA31262.1|462145_462310_-	reductase	NA	NA	NA	NA	NA
VEA31265.1|462306_463149_-	reductase	NA	NA	NA	NA	NA
VEA31268.1|463261_463873_-	oxidoreductase	NA	NA	NA	NA	NA
VEA31271.1|463887_464235_-	oxidoreductase	NA	NA	NA	NA	NA
VEA31274.1|464438_466379_+	lipoprotein	NA	NA	NA	NA	NA
VEA31277.1|466686_467730_+	rod shape-determining protein mreB	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
VEA31280.1|467794_468847_+	rod shape-determining protein	NA	NA	NA	NA	NA
VEA31283.1|468920_469337_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
VEA31287.1|469345_469939_+	Septum formation protein Maf	NA	NA	NA	NA	NA
VEA31290.1|469928_471398_+	ribonuclease G	NA	NA	NA	NA	NA
VEA31293.1|471508_472075_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA31296.1|472104_472785_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA31300.1|472793_473654_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA31303.1|473761_475306_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA	NA
VEA31306.1|475449_475665_+|protease	protease TldD	protease	NA	NA	NA	NA
VEA31309.1|475724_476267_+|protease	protease TldD	protease	NA	NA	NA	NA
VEA31312.1|476263_476692_+|protease	protease TldD	protease	NA	NA	NA	NA
VEA31315.1|476640_476901_+|protease	protease TldD	protease	NA	NA	NA	NA
VEA31318.1|477022_477952_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA31321.1|478346_478478_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA	NA
VEA31324.1|478701_479280_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA	NA
VEA31327.1|479285_479729_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA	NA
VEA31330.1|479679_480249_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA	NA
VEA31334.1|480492_480639_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA	NA
VEA31337.1|480596_481259_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA	NA
VEA31340.1|481432_481705_+	putative ribonuclease inhibitor	NA	NA	NA	NA	NA
VEA31343.1|481764_482031_-	membrane protein	NA	NA	NA	NA	NA
VEA31346.1|482135_482246_-	membrane protein	NA	NA	NA	NA	NA
VEA31349.1|482242_482401_-	membrane protein	NA	NA	NA	NA	NA
VEA31352.1|482767_483094_-	arginine repressor	NA	NA	NA	NA	NA
VEA31355.1|483904_484141_+	malate dehydrogenase	NA	NA	NA	NA	NA
VEA31358.1|484118_484589_+	malate dehydrogenase	NA	NA	NA	NA	NA
VEA31361.1|484706_484994_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEA31364.1|485082_485334_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEA31367.1|485320_485845_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA31370.1|485793_485985_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA31373.1|486195_486471_+	possible membrane transport protein	NA	Q6A201	Oenococcus_phage	44.4	1.1e-07
VEA31376.1|486499_487462_+	possible membrane transport protein	NA	Q6A201	Oenococcus_phage	32.3	4.8e-42
VEA31379.1|487494_488394_+	tartrate dehydratase subunit alpha	NA	NA	NA	NA	NA
VEA31382.1|488393_489011_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA	NA
VEA31385.1|489167_489410_+	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA	NA
VEA31387.1|489426_491196_+	oxaloacetate decarboxylase alpha subunit	NA	NA	NA	NA	NA
VEA31390.1|491208_491742_+	oxaloacetate decarboxylase subunit beta	NA	NA	NA	NA	NA
VEA31393.1|491726_492509_+	oxaloacetate decarboxylase beta chain	NA	NA	NA	NA	NA
VEA31397.1|492560_493259_+	membrane protein	NA	NA	NA	NA	NA
VEA31400.1|493292_493727_-|protease	serine endoprotease	protease	NA	NA	NA	NA
VEA31402.1|493735_494362_-|protease	serine endoprotease	protease	NA	NA	NA	NA
>prophage 3
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	541243	550707	4527628	protease,transposase	Saccharomonospora_phage(25.0%)	18	NA	NA
VEA31570.1|541243_541702_+|transposase	transposase for IS200	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
VEA31573.1|541867_543133_-	penicillin-binding protein	NA	NA	NA	NA	NA
VEA31576.1|543550_543739_+	transcription elongation factor	NA	NA	NA	NA	NA
VEA31579.1|543770_544028_+	transcription elongation factor	NA	NA	NA	NA	NA
VEA31582.1|544183_544516_-	RNA binding protein	NA	NA	NA	NA	NA
VEA31585.1|544604_544922_+	cell division protein	NA	NA	NA	NA	NA
VEA31587.1|544918_545089_+	cell division protein	NA	NA	NA	NA	NA
VEA31590.1|545088_545274_+	cell division protein	NA	NA	NA	NA	NA
VEA31593.1|545322_545577_+|protease	ATP-dependent metalloprotease	protease	NA	NA	NA	NA
VEA31596.1|545686_545950_+|protease	ATP-dependent metalloprotease	protease	R4TQL5	Phaeocystis_globosa_virus	51.4	3.4e-14
VEA31599.1|545957_546980_+|protease	ATP-dependent metalloprotease	protease	G9E4U6	Ostreococcus_lucimarinus_virus	51.9	9.9e-70
VEA31601.1|547074_547269_+|protease	ATP-dependent metalloprotease	protease	NA	NA	NA	NA
VEA31605.1|547372_547678_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	49.3	3.5e-07
VEA31608.1|547674_547836_+	dihydropteroate synthase	NA	NA	NA	NA	NA
VEA31611.1|548021_548219_+	dihydropteroate synthase	NA	NA	NA	NA	NA
VEA31614.1|548211_549450_+	PGM/PMM family protein	NA	NA	NA	NA	NA
VEA31617.1|549771_549987_+	Protein-export membrane protein secG	NA	NA	NA	NA	NA
VEA31620.1|550389_550707_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
>prophage 4
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	633357	641983	4527628	protease,tRNA	Moraxella_phage(33.33%)	11	NA	NA
VEA31909.1|633357_635340_-	RNA polymerase sigma-70 factor	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
VEA31912.1|635354_635945_-	DNA primase	NA	NA	NA	NA	NA
VEA31915.1|635901_636744_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	40.9	2.3e-48
VEA31918.1|636727_637102_-	DNA primase	NA	S5M810	Pseudoalteromonas_phage	49.5	1.9e-23
VEA31921.1|638034_638505_+|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	58.1	5.0e-45
VEA31924.1|638458_638800_+|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	55.1	9.7e-22
VEA31927.1|638823_638922_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA31930.1|639050_639605_-	Acyl-phosphate:glycerol-3-phosphateO- acyltransferase PlsY	NA	NA	NA	NA	NA
VEA31934.1|639769_640129_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
VEA31937.1|640226_641048_+	undecaprenyl pyrophosphate phosphatase	NA	NA	NA	NA	NA
VEA31940.1|641152_641983_-|tRNA	tRNA nucleotidyltransferase	tRNA	S5MVS8	Sinorhizobium_phage	41.1	8.9e-45
>prophage 5
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	1090610	1140231	4527628	plate,protease,capsid,transposase,integrase,terminase,head,tail,portal,holin	Salmonella_phage(91.53%)	80	1095868:1095912	1132818:1132862
VEA33670.1|1090610_1090766_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
VEA33673.1|1091188_1091692_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33676.1|1091946_1092138_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33679.1|1094028_1094172_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33682.1|1095555_1095702_-|integrase	prophage integrase	integrase	A0A1B5FPC6	Escherichia_phage	100.0	8.0e-10
1095868:1095912	attL	TGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
VEA33685.1|1096030_1097056_-|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	100.0	9.9e-203
VEA33688.1|1097273_1097693_-	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	100.0	9.0e-70
VEA33691.1|1097812_1098055_+	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	100.0	1.1e-38
VEA33694.1|1098017_1098599_+	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	100.0	4.9e-82
VEA33697.1|1098606_1098807_+	bacteriophage protein	NA	A0A1S6L005	Salmonella_phage	100.0	3.2e-33
VEA33700.1|1098770_1099112_+	Uncharacterised protein	NA	A0A1S6L019	Salmonella_phage	100.0	2.1e-56
VEA33703.1|1099180_1099414_+	putative 8.8 kDa protein in GpA 5'region	NA	A0A1S6L021	Salmonella_phage	100.0	9.8e-34
VEA33706.1|1099413_1099641_+	C4-type zinc finger protein, DksA/TraR family	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
VEA33708.1|1099637_1099934_+	gp91	NA	C9E2N9	Enterococcus_phage	45.5	1.5e-10
VEA33711.1|1099930_1100779_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	82.3	6.4e-131
VEA33714.1|1100775_1101786_+	phosphohydrolase	NA	B7SYG0	Stenotrophomonas_phage	43.2	5.9e-67
VEA33717.1|1101782_1104206_+	Bacteriophage replication gene A protein (GPA)	NA	A0A1S6L028	Salmonella_phage	93.5	0.0e+00
VEA33720.1|1104361_1104550_+	bacteriophage protein	NA	A0A1S6L006	Salmonella_phage	98.4	1.0e-25
VEA33723.1|1104561_1104798_+	dinI-like protein in retron EC67	NA	A0A1S6L014	Salmonella_phage	94.3	7.4e-29
VEA33727.1|1104914_1105424_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33730.1|1105389_1105524_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33733.1|1106699_1107044_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33736.1|1107056_1107491_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33739.1|1107490_1108156_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33742.1|1108314_1108428_-|capsid,portal	probable capsid portal protein	capsid,portal	E5G6M3	Salmonella_phage	96.4	2.6e-08
VEA33745.1|1108424_1109117_-|portal	portal vertex-like protein	portal	A0A1S6KZW5	Salmonella_phage	95.2	4.3e-125
VEA33748.1|1109564_1111022_-|terminase	terminase, ATPase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.2	3.1e-287
VEA33751.1|1111164_1111353_+|capsid	capsid protein	capsid	E5G6M5	Salmonella_phage	90.3	2.5e-24
VEA33754.1|1111349_1111997_+|capsid	capsid protein	capsid	E5G6M5	Salmonella_phage	97.7	1.9e-90
VEA33757.1|1112013_1112169_+|capsid	major capsid-like protein	capsid	E5G6M6	Salmonella_phage	100.0	3.2e-09
VEA33760.1|1112293_1112881_+|capsid	major capsid-like protein	capsid	E5G6M6	Salmonella_phage	94.1	3.0e-95
VEA33763.1|1112834_1113065_+|capsid	major capsid-like protein	capsid	E5G6M6	Salmonella_phage	95.5	7.2e-29
VEA33766.1|1113243_1113423_+|terminase	terminase, endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	1.9e-24
VEA33769.1|1113385_1113712_+|terminase	terminase, endonuclease subunit	terminase	E5G6M7	Salmonella_phage	91.3	4.9e-39
VEA33772.1|1114023_1114311_+|head	phage head completion protein	head	A0A1S6KZW8	Salmonella_phage	87.8	5.1e-32
VEA33775.1|1114307_1114490_+|tail	phage tail protein X	tail	E5G6M9	Salmonella_phage	85.4	4.2e-16
VEA33778.1|1114493_1114709_+|holin	holin family protein	holin	E5G6N0	Salmonella_phage	80.6	1.3e-24
VEA33781.1|1114717_1114933_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	85.1	9.7e-28
VEA33783.1|1114973_1115207_+	lysozyme	NA	E5G6N1	Salmonella_phage	93.3	1.0e-35
VEA33786.1|1115203_1115506_+	regulatory protein	NA	E5G6N2	Salmonella_phage	96.0	3.7e-41
VEA33789.1|1115770_1116106_+|tail	tail fiber protein	tail	E5G6N3	Salmonella_phage	93.4	5.2e-52
VEA33792.1|1116074_1116563_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33795.1|1116623_1116818_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33798.1|1117041_1117710_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33801.1|1117742_1118078_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33803.1|1118468_1118711_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	84.6	1.7e-33
VEA33806.1|1118688_1118856_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	88.0	6.0e-17
VEA33810.1|1118852_1119212_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	87.4	3.2e-52
VEA33813.1|1119198_1119564_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	86.3	7.1e-47
VEA33816.1|1119560_1119788_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	93.2	2.4e-21
VEA33819.1|1119759_1120107_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	92.7	7.2e-49
VEA33822.1|1120067_1120199_+|tail	putative phage tail protein	tail	E5G6N9	Salmonella_phage	96.7	2.3e-08
VEA33825.1|1120200_1120710_+|tail	putative phage tail protein	tail	A0A1S6L000	Salmonella_phage	94.7	2.6e-95
VEA33828.1|1120706_1122047_+|tail	phage tail-like protein	tail	A0A1S6KZZ8	Salmonella_phage	66.7	2.0e-150
VEA33831.1|1122046_1122310_+	Fels-2 prophage Pin	NA	A0A1B0V7G4	Salmonella_phage	93.7	9.7e-30
VEA33834.1|1122529_1122937_+	Fels-2 prophage Tfa	NA	A0A1B0V844	Salmonella_phage	88.1	1.4e-64
VEA33837.1|1122940_1123528_-|tail	phage tail-fiber asembly protein	tail	A0A1B0VCD0	Salmonella_phage	94.4	1.7e-106
VEA33840.1|1123505_1124105_-|tail	phage tail-like protein	tail	A0A1B0VFW4	Salmonella_phage	89.5	8.6e-82
VEA33843.1|1124342_1124603_+	DNA invertase-like protein	NA	A0A1S6L009	Salmonella_phage	100.0	3.5e-32
VEA33846.1|1125008_1125335_+|tail	major tail sheath protein	tail	E5G6P7	Salmonella_phage	100.0	8.6e-28
VEA33849.1|1125403_1125859_+|tail	major tail sheath protein	tail	E5G6P7	Salmonella_phage	98.7	2.0e-83
VEA33852.1|1125911_1126217_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	97.6	5.8e-42
VEA33855.1|1126195_1126360_+|tail	phage major tail tube protein FII	tail	E5G6P8	Salmonella_phage	100.0	4.5e-17
VEA33858.1|1126322_1126712_+|tail	phage major tail tube protein FII	tail	A0A1S6L002	Salmonella_phage	98.4	1.8e-64
VEA33861.1|1126766_1127069_+|tail	phage tail protein E	tail	A0A1S6KZZ9	Salmonella_phage	100.0	2.5e-45
VEA33864.1|1127195_1127855_+|tail	phage tail tape measure protein	tail	A0A1S6L010	Salmonella_phage	98.9	4.9e-38
VEA33867.1|1127839_1128061_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	100.0	3.2e-26
VEA33870.1|1128002_1130003_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	99.2	0.0e+00
VEA33873.1|1129999_1130251_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	98.7	2.5e-35
VEA33876.1|1130690_1131587_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	96.6	1.5e-151
VEA33878.1|1131392_1131860_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA33880.1|1132156_1132747_+	antirepressor-like protein	NA	A0A0P0ZC44	Stx2-converting_phage	76.7	2.3e-47
VEA33883.1|1133250_1134213_-	Putative HlyD family secretion protein	NA	NA	NA	NA	NA
1132818:1132862	attR	TGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
VEA33886.1|1134209_1134440_-	Putative HlyD family secretion protein	NA	NA	NA	NA	NA
VEA33889.1|1134420_1135368_-	type I secretion protein, ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	34.5	3.3e-19
VEA33892.1|1135357_1135969_-	type I secretion protein, ATP-binding protein	NA	NA	NA	NA	NA
VEA33895.1|1135931_1136324_-	type I secretion protein, ATP-binding protein	NA	NA	NA	NA	NA
VEA33898.1|1137021_1137408_-	type I secretion protein	NA	NA	NA	NA	NA
VEA33901.1|1138076_1139813_-	large repetitive protein	NA	NA	NA	NA	NA
VEA33904.1|1139916_1140231_-|protease	Bacillopeptidase F Esterase; RP-I protease; 90 kDa serine proteinase; Flags: Precursor	protease	NA	NA	NA	NA
>prophage 6
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	1646631	1655807	4527628	tRNA	Enterobacteria_phage(75.0%)	12	NA	NA
VEA35699.1|1646631_1647579_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
VEA35702.1|1647562_1648294_+	putative permease transmembrane component	NA	NA	NA	NA	NA
VEA35705.1|1648274_1648382_-	membrane protein	NA	NA	NA	NA	NA
VEA35707.1|1648441_1649182_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.1	5.1e-100
VEA35710.1|1649404_1649995_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	88.2	1.8e-71
VEA35713.1|1649939_1651199_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	93.5	1.0e-193
VEA35716.1|1651254_1651617_+	two-component system response regulator	NA	NA	NA	NA	NA
VEA35719.1|1651875_1652217_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.1	1.0e-39
VEA35722.1|1652213_1652315_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	87.9	8.5e-11
VEA35725.1|1652371_1652884_-	lipoprotein	NA	NA	NA	NA	NA
VEA35728.1|1653074_1653533_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
VEA35731.1|1653773_1655807_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 7
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	1812272	1839677	4527628	protease,integrase,transposase	Escherichia_phage(50.0%)	32	1803441:1803500	1835235:1835312
1803441:1803500	attL	ATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGA	NA	NA	NA	NA
VEA36242.1|1812272_1812797_-|protease	endoprotease	protease	G9L6C4	Escherichia_phage	77.7	1.3e-36
VEA36245.1|1813424_1815521_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36248.1|1815552_1816368_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36251.1|1816331_1816844_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36254.1|1816846_1817215_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36257.1|1817452_1817866_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36261.1|1817934_1818285_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36264.1|1818862_1819087_+|transposase	transposase	transposase	NA	NA	NA	NA
VEA36267.1|1819106_1819739_+|transposase	transposase	transposase	NA	NA	NA	NA
VEA36270.1|1820027_1820756_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36273.1|1820805_1821375_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36275.1|1821480_1822071_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36278.1|1822027_1823314_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36281.1|1824085_1824577_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36284.1|1824626_1824923_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36287.1|1824952_1826236_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36290.1|1826448_1826802_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36293.1|1826870_1827497_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36296.1|1827628_1828336_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36299.1|1828773_1829049_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36302.1|1829014_1829248_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36305.1|1829244_1829394_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA36308.1|1830129_1830321_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
VEA36311.1|1830325_1830547_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
VEA36314.1|1831137_1831362_+	DNA-binding protein	NA	NA	NA	NA	NA
VEA36316.1|1831315_1831747_+	DNA-binding prophage protein	NA	NA	NA	NA	NA
VEA36319.1|1831749_1832022_+	DNA-binding protein	NA	NA	NA	NA	NA
VEA36322.1|1832822_1834085_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	39.6	1.1e-70
VEA36325.1|1835392_1836190_-	Putative inner membrane protein	NA	NA	NA	NA	NA
1835235:1835312	attR	TCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTACAGAGGAATTGTTTCAACGAGGCGCAT	NA	NA	NA	NA
VEA36328.1|1837384_1838200_+	membrane protein	NA	NA	NA	NA	NA
VEA36330.1|1838373_1839552_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
VEA36333.1|1839548_1839677_+|transposase	transposase IS116	transposase	NA	NA	NA	NA
>prophage 8
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	1939751	1948507	4527628	plate,transposase,tail	Salmonella_phage(53.85%)	13	NA	NA
VEA36748.1|1939751_1940450_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	3.7e-20
VEA36753.1|1940646_1941105_+|transposase	transposase for IS200	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
VEA36756.1|1941230_1941515_+|plate	baseplate protein	plate	A0A0M5M1K7	Salmonella_phage	100.0	7.2e-47
VEA36759.1|1941518_1941983_+	bacteriophage protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	63.0	2.9e-53
VEA36762.1|1941982_1942336_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	96.6	4.6e-59
VEA36765.1|1942336_1943323_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.4	1.3e-164
VEA36768.1|1943288_1943537_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	96.3	2.9e-36
VEA36771.1|1943533_1944214_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	97.8	4.9e-126
VEA36772.1|1944213_1944495_+|tail	side tail fiber protein	tail	A0A0M3ULD8	Salmonella_phage	100.0	1.6e-43
VEA36775.1|1945000_1945432_+|tail	Caudovirales tail fibre assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	51.8	5.1e-36
VEA36778.1|1946935_1947298_+	Phage DNA invertase	NA	A0A1S6L009	Salmonella_phage	79.7	5.4e-47
VEA36781.1|1947418_1948087_-	Uncharacterized protein yedK	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	62.6	3.5e-76
VEA36784.1|1948345_1948507_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	63.0	2.9e-08
>prophage 9
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	2047953	2054386	4527628		Hokovirus(66.67%)	7	NA	NA
VEA37160.1|2047953_2049000_-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase	NA	S4W5F1	Pandoravirus	47.6	9.7e-81
VEA37163.1|2049154_2049988_-	PEP synthetase regulatory protein	NA	NA	NA	NA	NA
VEA37166.1|2050324_2050804_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.6	2.7e-09
VEA37169.1|2050788_2051565_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	43.6	3.7e-45
VEA37173.1|2051536_2051953_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	39.7	3.8e-20
VEA37176.1|2052134_2052704_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	54.0	3.2e-54
VEA37179.1|2052745_2054386_-	short chain acyl-CoA synthetase	NA	A0A1V0SBX8	Catovirus	24.1	2.3e-20
>prophage 10
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	2195262	2205905	4527628		Escherichia_phage(81.82%)	19	NA	NA
VEA37799.1|2195262_2195877_-	Anaerobic dimethyl sulfoxide reductasechaperone DmsD	NA	A0A077SLS7	Escherichia_phage	37.3	7.3e-28
VEA37801.1|2195919_2196777_-	dimethyl sulfoxide reductase subunit H	NA	NA	NA	NA	NA
VEA37803.1|2196778_2197396_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.1	1.6e-75
VEA37805.1|2197406_2197607_-	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	65.6	2.3e-15
VEA37807.1|2197911_2198472_-	dimethyl sulfoxide reductase subunit	NA	NA	NA	NA	NA
VEA37809.1|2198413_2198608_-	dimethyl sulfoxide reductase subunit	NA	NA	NA	NA	NA
VEA37811.1|2198689_2199694_-	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	47.3	1.7e-69
VEA37813.1|2199867_2200557_-	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	52.9	7.7e-42
VEA37815.1|2200562_2201171_-	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	50.3	4.1e-39
VEA37817.1|2201121_2201388_-	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	57.7	1.3e-21
VEA37819.1|2201479_2201773_-	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	55.8	3.3e-18
VEA37821.1|2201729_2202395_-	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	48.8	1.0e-35
VEA37823.1|2202510_2202858_-	outer membrane protein	NA	NA	NA	NA	NA
VEA37825.1|2202955_2203189_+	lipoprotein	NA	NA	NA	NA	NA
VEA37827.1|2203133_2203676_+	lipoprotein	NA	NA	NA	NA	NA
VEA37829.1|2203716_2204277_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VEA37831.1|2204312_2204654_-	putative secreted protein	NA	NA	NA	NA	NA
VEA37833.1|2204797_2205133_+	UPF0060 membrane protein CKO_01576	NA	A0A218MNG8	uncultured_virus	52.4	5.0e-23
VEA37835.1|2205254_2205905_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	35.9	1.2e-20
>prophage 11
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	2366861	2377184	4527628	tRNA	Stx2-converting_phage(40.0%)	13	NA	NA
VEA38383.1|2366861_2367296_+	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
VEA38386.1|2367348_2367687_-	multidrug transporter	NA	NA	NA	NA	NA
VEA38389.1|2367960_2368476_-	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	67.3	2.4e-56
VEA38392.1|2368899_2369148_-	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	66.2	5.2e-25
VEA38395.1|2369258_2370062_-	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	40.7	7.3e-52
VEA38398.1|2370144_2371386_-	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	34.9	5.1e-60
VEA38401.1|2372061_2372715_+|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	96.3	5.3e-117
VEA38404.1|2372740_2372998_+|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	100.0	1.2e-11
VEA38407.1|2373041_2373683_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.7	6.5e-19
VEA38410.1|2373784_2374414_-	ATP-dependent RNA helicase	NA	A0A1V0SBR7	Catovirus	31.3	3.4e-20
VEA38413.1|2374899_2375535_-	zinc transport protein ZntB	NA	NA	NA	NA	NA
VEA38416.1|2375485_2375884_-	membrane transport protein	NA	NA	NA	NA	NA
VEA38419.1|2376029_2377184_-	chemo-receptor protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.7	1.5e-10
>prophage 12
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	2614605	2622200	4527628	integrase,tail	Escherichia_phage(33.33%)	7	2616091:2616104	2624373:2624386
VEA39326.1|2614605_2615277_+	Gifsy-2 prophage protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	60.8	1.1e-80
VEA39329.1|2615596_2617699_-	SspH1	NA	Q9MBL9	Phage_Gifsy-2	46.9	2.1e-26
2616091:2616104	attL	GCGTTGCCAGGCGG	NA	NA	NA	NA
VEA39332.1|2617870_2618644_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	87.5	2.6e-131
VEA39334.1|2618597_2618900_-	regulator	NA	A0A077SLK2	Escherichia_phage	81.5	1.2e-39
VEA39337.1|2619324_2619594_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA39340.1|2620809_2621169_-|tail	side tail fiber protein	tail	E5G6P0	Salmonella_phage	73.0	3.2e-15
VEA39343.1|2621114_2622200_-	putative Tail Fiber Protein	NA	Q1MVL8	Enterobacteria_phage	45.1	9.9e-52
2624373:2624386	attR	CCGCCTGGCAACGC	NA	NA	NA	NA
>prophage 13
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	2697441	2702347	4527628		Burkholderia_phage(50.0%)	7	NA	NA
VEA39682.1|2697441_2697912_-	patch repair protein	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
VEA39685.1|2697892_2698264_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	60.6	4.3e-23
VEA39688.1|2698250_2699324_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	55.0	7.4e-68
VEA39691.1|2699397_2700093_-	metal-dependent phospho hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.1e-07
VEA39694.1|2700172_2700484_-	membrane protein	NA	NA	NA	NA	NA
VEA39697.1|2701134_2701503_+	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	62.3	2.0e-33
VEA39700.1|2701480_2702347_+	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	52.3	7.6e-63
>prophage 14
LR134148	Salmonella enterica subsp. enterica strain NCTC8271 genome assembly, chromosome: 1	4527628	3245735	3281343	4527628	protease,transposase	Bacillus_phage(33.33%)	46	NA	NA
VEA41459.1|3245735_3246329_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	54.8	2.0e-54
VEA41461.1|3246340_3246670_+|transposase	Putative transposase	transposase	NA	NA	NA	NA
VEA41463.1|3246711_3248982_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA41465.1|3248941_3249148_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA41467.1|3249194_3249701_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA41469.1|3249648_3250077_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA41471.1|3250195_3250522_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
VEA41473.1|3250502_3250850_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
VEA41475.1|3250991_3252185_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
VEA41477.1|3252207_3253191_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA41479.1|3253203_3255357_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA41481.1|3255845_3256229_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
VEA41483.1|3256256_3256475_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
VEA41485.1|3256653_3256872_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VEA41487.1|3256922_3257207_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VEA41489.1|3257481_3257796_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA41491.1|3257851_3257992_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
VEA41493.1|3257997_3258258_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEA41495.1|3258482_3260033_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
VEA41497.1|3260341_3260653_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
VEA41499.1|3260685_3261255_-	lipoprotein	NA	NA	NA	NA	NA
VEA41501.1|3261470_3262043_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
VEA41503.1|3261999_3262332_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
VEA41505.1|3262431_3262785_-	ammonium transporter	NA	NA	NA	NA	NA
VEA41507.1|3262745_3263720_-	ammonium transporter	NA	NA	NA	NA	NA
VEA41509.1|3263751_3264090_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
VEA41511.1|3264303_3266085_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.9	2.4e-39
VEA41513.1|3266077_3267148_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	36.4	1.5e-39
VEA41515.1|3267128_3267851_-	ABC transporter ATP-binding membrane protein	NA	NA	NA	NA	NA
VEA41517.1|3267891_3268149_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA41519.1|3268117_3268351_-	putative transcriptional regulator	NA	NA	NA	NA	NA
VEA41521.1|3268464_3269520_+	lyase	NA	NA	NA	NA	NA
VEA41523.1|3269570_3270389_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
VEA41526.1|3270489_3271215_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEA41528.1|3271306_3272191_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEA41530.1|3272255_3272951_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	9.3e-88
VEA41532.1|3273056_3273455_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
VEA41534.1|3273558_3273933_-	competence protein ComEA	NA	NA	NA	NA	NA
VEA41536.1|3274150_3274717_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEA41538.1|3274697_3275231_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEA41540.1|3275293_3275959_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEA41542.1|3276249_3276522_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
VEA41544.1|3276730_3277804_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	60.2	1.2e-118
VEA41546.1|3277838_3279086_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	44.2	2.3e-89
VEA41548.1|3279273_3280545_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
VEA41550.1|3280800_3281343_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	62.4	4.3e-56
