assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635575.1_31180_A01	LR134144	Salmonella enterica subsp. enterica strain NCTC7404 genome assembly, chromosome: 1	2	597604-597844	1,2	PILER-CR,CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	Orphan	TTTTACAGGGCGACAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA,GCTTCGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGAC	53,54	1	1	597771-597825	LR134144.1_597845-597899	NA:NA	2,1	2	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	NA,NA|55aa|down_8|LR134144.1_610088_610253_-	NA|348aa|up_9|LR134144.1_586451_587495_-	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase	NA|458aa|up_8|LR134144.1_587538_588912_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|95aa|up_7|LR134144.1_588915_589200_-	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|155aa|up_6|LR134144.1_589230_589695_-	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|424aa|up_5|LR134144.1_589709_590981_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|285aa|up_4|LR134144.1_591100_591955_-	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|524aa|up_3|LR134144.1_592212_593784_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|LR134144.1_594314_595085_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|LR134144.1_595110_596001_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|LR134144.1_596098_597244_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|LR134144.1_598579_599518_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|LR134144.1_599615_600605_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|LR134144.1_600625_601957_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|LR134144.1_602023_603232_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|LR134144.1_603265_605560_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|LR134144.1_605629_606994_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|LR134144.1_607308_608640_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|LR134144.1_608665_609976_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|LR134144.1_610088_610253_-	NA	NA|234aa|down_9|LR134144.1_610276_610978_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCA_900635575.1_31180_A01	LR134144	Salmonella enterica subsp. enterica strain NCTC7404 genome assembly, chromosome: 1	3	938743-940296	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,25,25	25	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	NA|49aa|up_0|LR134144.1_938476_938623_+,NA	NA|162aa|up_9|LR134144.1_927822_928308_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|167aa|up_8|LR134144.1_928307_928808_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_7|LR134144.1_928833_929607_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|882aa|up_6|LR134144.1_929619_932265_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_5|LR134144.1_932399_932987_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_4|LR134144.1_933592_934393_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LR134144.1_934620_936258_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LR134144.1_936340_937639_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_1|LR134144.1_937774_938446_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|49aa|up_0|LR134144.1_938476_938623_+	NA	NA|266aa|down_0|LR134144.1_940393_941191_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LR134144.1_941280_941643_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134144.1_942066_943866_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134144.1_943865_945578_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134144.1_945653_946388_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LR134144.1_946475_947429_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|LR134144.1_947809_950509_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|LR134144.1_950865_952401_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|LR134144.1_952417_953020_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|LR134144.1_953042_954101_+	pfam09344, Cas_CT1975, CT1975-like protein
GCA_900635575.1_31180_A01	LR134144	Salmonella enterica subsp. enterica strain NCTC7404 genome assembly, chromosome: 1	4	956838-958584	4,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	28,28,25	28	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	NA,NA	NA|245aa|up_9|LR134144.1_945653_946388_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|LR134144.1_946475_947429_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|LR134144.1_947809_950509_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|LR134144.1_950865_952401_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|LR134144.1_952417_953020_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|LR134144.1_953042_954101_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|LR134144.1_954110_954836_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|LR134144.1_954835_955540_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|LR134144.1_955539_956457_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134144.1_956459_956753_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LR134144.1_958598_959645_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134144.1_959895_960804_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LR134144.1_960813_962253_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134144.1_962239_962845_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134144.1_962895_963219_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134144.1_963409_963721_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134144.1_963739_964450_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134144.1_964449_964929_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134144.1_964925_965975_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134144.1_965955_966717_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
