assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635565.1_31136_G01	LR134146	Salmonella enterica subsp. enterica strain NCTC6759 genome assembly, chromosome: 1	2	167411-167489	2	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Orphan	TTGATATTAGCCTGGTGGTAATG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA|70aa|up_8|LR134146.1_156012_156222_+,NA	NA|121aa|up_9|LR134146.1_155359_155722_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|70aa|up_8|LR134146.1_156012_156222_+	NA	NA|197aa|up_7|LR134146.1_156231_156822_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|up_6|LR134146.1_156818_157967_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|639aa|up_5|LR134146.1_158187_160104_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|214aa|up_4|LR134146.1_160546_161188_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|464aa|up_3|LR134146.1_161286_162678_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|617aa|up_2|LR134146.1_162674_164525_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|294aa|up_1|LR134146.1_164772_165654_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|466aa|up_0|LR134146.1_165965_167363_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|199aa|down_0|LR134146.1_167592_168189_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|396aa|down_1|LR134146.1_168142_169330_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|94aa|down_2|LR134146.1_169268_169550_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|272aa|down_3|LR134146.1_169815_170631_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|232aa|down_4|LR134146.1_170791_171487_-	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|287aa|down_5|LR134146.1_171480_172341_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|221aa|down_6|LR134146.1_172333_172996_-	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|256aa|down_7|LR134146.1_172992_173760_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|243aa|down_8|LR134146.1_173761_174490_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|329aa|down_9|LR134146.1_174493_175480_-	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold
GCA_900635565.1_31136_G01	LR134146	Salmonella enterica subsp. enterica strain NCTC6759 genome assembly, chromosome: 1	4	940051-943801	1,4,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	59,61,61,59	61	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|167aa|up_9|LR134146.1_929612_930113_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|54aa|up_8|LR134146.1_930138_930300_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|205aa|up_7|LR134146.1_930296_930911_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|882aa|up_6|LR134146.1_930923_933569_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_5|LR134146.1_933702_934290_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_4|LR134146.1_934898_935699_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LR134146.1_935927_937565_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LR134146.1_937647_938946_+	PRK00077, eno, enolase; Provisional	NA|73aa|up_1|LR134146.1_939081_939300_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|150aa|up_0|LR134146.1_939304_939754_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|167aa|down_0|LR134146.1_943898_944399_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LR134146.1_944786_945149_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|178aa|down_2|LR134146.1_945572_946106_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|443aa|down_3|LR134146.1_946044_947373_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|LR134146.1_947372_949085_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|LR134146.1_949160_949895_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|LR134146.1_950107_951061_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_7|LR134146.1_951444_954144_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_8|LR134146.1_954501_956037_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_9|LR134146.1_956053_956656_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2
GCA_900635565.1_31136_G01	LR134146	Salmonella enterica subsp. enterica strain NCTC6759 genome assembly, chromosome: 1	5	960474-964509	3,5,2,4,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,26,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	16,65,65,16,65	65	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|245aa|up_9|LR134146.1_949160_949895_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|LR134146.1_950107_951061_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|LR134146.1_951444_954144_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|LR134146.1_954501_956037_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|LR134146.1_956053_956656_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|LR134146.1_956678_957737_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|LR134146.1_957746_958472_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|LR134146.1_958471_959176_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|LR134146.1_959175_960093_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134146.1_960095_960389_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LR134146.1_964523_965570_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134146.1_965820_966729_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LR134146.1_966738_968178_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134146.1_968164_968770_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134146.1_968820_969144_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134146.1_969334_969646_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134146.1_969664_970375_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134146.1_970374_970854_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134146.1_970850_971900_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134146.1_971880_972642_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
