assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635535.1_30316_A02	LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	2	957756-958699	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACC,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG	28,29,29	2	2	958272-958304|958273-958304	LR134141.1_969326-969294|LR134141.1_969325-969294	I-E:I-E:I-E	14,15,15	15	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|919aa|up_9|LR134141.1_946140_948897_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_8|LR134141.1_948954_950250_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|124aa|up_7|LR134141.1_950301_950673_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|up_6|LR134141.1_950638_951940_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|215aa|up_5|LR134141.1_951891_952536_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|107aa|up_4|LR134141.1_952610_952931_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|167aa|up_3|LR134141.1_952902_953403_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LR134141.1_953630_955268_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LR134141.1_955350_956649_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LR134141.1_956787_957459_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LR134141.1_958796_959594_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LR134141.1_959683_960046_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134141.1_960472_962272_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134141.1_962271_963984_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134141.1_964092_964827_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LR134141.1_964914_965868_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|248aa|down_6|LR134141.1_966721_967465_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|145aa|down_7|LR134141.1_967562_967997_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|251aa|down_8|LR134141.1_968223_968976_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|486aa|down_9|LR134141.1_969087_970545_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_900635535.1_30316_A02	LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	3	974852-975677	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAAC	30,29,27	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|69aa|down_5|LR134141.1_979648_979855_-	cas3|145aa|up_9|LR134141.1_967562_967997_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|251aa|up_8|LR134141.1_968223_968976_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|486aa|up_7|LR134141.1_969087_970545_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|181aa|up_6|LR134141.1_970541_971084_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_5|LR134141.1_971097_972156_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_4|LR134141.1_972166_972913_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|73aa|up_3|LR134141.1_972894_973113_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas6e|159aa|up_2|LR134141.1_973069_973546_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|291aa|up_1|LR134141.1_973591_974464_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134141.1_974463_974757_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LR134141.1_975690_976737_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|232aa|down_1|LR134141.1_977199_977895_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|56aa|down_2|LR134141.1_977904_978072_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|357aa|down_3|LR134141.1_978272_979343_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|140aa|down_4|LR134141.1_979329_979749_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|69aa|down_5|LR134141.1_979648_979855_-	NA	NA|64aa|down_6|LR134141.1_979986_980178_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|44aa|down_7|LR134141.1_980177_980309_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|90aa|down_8|LR134141.1_980499_980769_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_9|LR134141.1_980830_981541_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase
GCA_900635535.1_30316_A02	LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4	2079820-2081680	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	29,30,30	30	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|43aa|up_0|LR134141.1_2079498_2079627_+,NA|38aa|down_4|LR134141.1_2086236_2086350_+	NA|460aa|up_9|LR134141.1_2066804_2068184_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_8|LR134141.1_2068187_2068838_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|238aa|up_7|LR134141.1_2068830_2069544_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|367aa|up_6|LR134141.1_2069527_2070628_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|466aa|up_5|LR134141.1_2070966_2072364_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_4|LR134141.1_2072750_2076494_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_3|LR134141.1_2076490_2078026_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_2|LR134141.1_2078022_2078733_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_1|LR134141.1_2078732_2079410_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|43aa|up_0|LR134141.1_2079498_2079627_+	NA	NA|281aa|down_0|LR134141.1_2082561_2083404_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|LR134141.1_2083454_2083913_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|299aa|down_2|LR134141.1_2084032_2084929_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|LR134141.1_2085019_2086033_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|38aa|down_4|LR134141.1_2086236_2086350_+	NA	NA|282aa|down_5|LR134141.1_2086300_2087146_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|113aa|down_6|LR134141.1_2087277_2087616_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|38aa|down_7|LR134141.1_2087578_2087692_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_8|LR134141.1_2088354_2088972_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_9|LR134141.1_2089167_2091846_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
