The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	301211	307068	4724014	tRNA	Dickeya_phage(33.33%)	7	NA	NA
VEA00372.1|301211_301502_-	membrane protein	NA	A0A2I7SAW6	Vibrio_phage	50.8	1.1e-10
VEA00373.1|301736_301880_-	membrane protein	NA	NA	NA	NA	NA
VEA00374.1|301960_302296_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusA	tRNA	A0A140XB86	Dickeya_phage	83.3	8.4e-10
VEA00375.1|302319_303963_-	methyl-accepting chemotaxis citrate transducer	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.4	2.6e-11
VEA00376.1|304163_305708_-	heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	38.2	2.2e-89
VEA00377.1|305668_306361_-	heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	31.0	8.3e-12
VEA00378.1|306441_307068_-	putative enzyme yhhN	NA	A0A140XAH6	Dickeya_phage	64.6	3.8e-32
>prophage 2
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	983046	990464	4724014		uncultured_Mediterranean_phage(33.33%)	10	NA	NA
VEA01096.1|983046_983808_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.8	1.4e-57
VEA01097.1|983801_984428_+	L-isoaspartyl protein carboxyl methyltransferase type II	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	8.2e-35
VEA01098.1|984602_985736_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	5.0e-06
VEA01099.1|985798_986566_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	41.3	8.6e-26
VEA01100.1|986562_986793_+	RNA polymerase sigma factor rpoS	NA	A0A1W6DY88	Aeromonas_phage	45.5	1.1e-05
VEA01101.1|986839_987076_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA	NA
VEA01102.1|987086_988514_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA	NA
VEA01103.1|988513_989107_-	decarboxylase	NA	NA	NA	NA	NA
VEA01104.1|989276_989681_+	Transcriptional regulator hosA	NA	NA	NA	NA	NA
VEA01105.1|989699_990464_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.5	1.5e-70
>prophage 3
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	1315405	1320668	4724014		Prochlorococcus_phage(33.33%)	11	NA	NA
VEA01416.1|1315405_1316044_-	phosphoribosylglycinamidine myltransferase	NA	E3SNR5	Prochlorococcus_phage	43.6	7.4e-31
VEA01417.1|1316043_1316322_-	phosphoribosylaminoimidazole synthetase (AIR synthetase)	NA	NA	NA	NA	NA
VEA01418.1|1316276_1316630_-	phosphoribosylaminoimidazole synthetase (AIR synthetase)	NA	M4QRQ6	Synechococcus_phage	42.3	3.7e-16
VEA01419.1|1316586_1317081_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	51.9	2.2e-35
VEA01420.1|1317484_1317610_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
VEA01421.1|1317569_1317779_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
VEA01422.1|1317855_1318110_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
VEA01423.1|1318197_1318701_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	29.0	1.0e-06
VEA01424.1|1318682_1319486_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	36.1	4.4e-33
VEA01425.1|1319556_1320282_+	Chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
VEA01426.1|1320308_1320668_-	arsenate reductase (arsenical pump modifier)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	45.6	8.1e-19
>prophage 4
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	1547532	1561576	4724014		Pseudoalteromonas_phage(25.0%)	15	NA	NA
VEA01665.1|1547532_1548603_+	glycerophosphoryl diester phosphodiesterase periplasmic	NA	A0A220BYK6	Staphylococcus_phage	46.0	6.6e-08
VEA01666.1|1548738_1549596_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA01667.1|1549730_1550951_+	permease	NA	NA	NA	NA	NA
VEA01668.1|1550952_1551207_-	ferredoxin	NA	G9IAA2	Pseudomonas_phage	74.6	3.1e-25
VEA01669.1|1551206_1551593_-	ribonucleoside-diphosphate reductase 1 subunit beta	NA	G9IAA3	Pseudomonas_phage	78.1	1.1e-53
VEA01670.1|1551573_1551915_-	ribonucleoside-diphosphate reductase 1 subunit beta	NA	A0A2H5BJL6	Erwinia_phage	75.2	3.0e-39
VEA01671.1|1552067_1552340_-	ribonucleoside-diphosphate reductase 1 subunit beta	NA	A0A218MAG5	Escherichia_phage	87.3	7.4e-33
VEA01672.1|1552452_1552977_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	NA	A0A2D1GNB1	Pseudoalteromonas_phage	69.4	2.7e-63
VEA01673.1|1552948_1553662_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	NA	M4M9Q6	Vibrio_phage	53.1	2.8e-63
VEA01674.1|1553799_1554594_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	NA	A0A1W5PTL2	Pseudoalteromonas_phage	69.1	7.7e-70
VEA01675.1|1554562_1554742_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	NA	A0A1W5PTL2	Pseudoalteromonas_phage	70.6	8.6e-14
VEA01676.1|1555098_1555824_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA	NA
VEA01677.1|1555974_1556550_+	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	47.7	3.8e-34
VEA01678.1|1556506_1558612_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	25.8	1.9e-43
VEA01679.1|1558729_1561576_+	sensor protein RcsC	NA	A0A1V0SGX0	Hokovirus	26.4	3.2e-41
>prophage 5
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	1591149	1598842	4724014		Vibrio_phage(50.0%)	11	NA	NA
VEA01712.1|1591149_1592157_+	nucleoid-asociated protein	NA	A0A1V0E8C0	Vibrio_phage	48.0	2.2e-82
VEA01713.1|1592272_1592557_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
VEA01714.1|1592681_1593566_-	helicase	NA	M4Q3N1	Vibrio_phage	46.2	9.9e-34
VEA01715.1|1593562_1594072_-	helicase	NA	M4Q3N1	Vibrio_phage	38.5	2.2e-25
VEA01716.1|1594028_1594445_-	helicase	NA	A0A2P1MXB6	Escherichia_phage	45.2	2.6e-21
VEA01717.1|1594596_1595064_+	ribosomal small subunit pseudouridine synthase	NA	NA	NA	NA	NA
VEA01718.1|1595020_1595269_+	ribosomal small subunit pseudouridine synthase	NA	NA	NA	NA	NA
VEA01719.1|1595321_1596053_+	bicyclomycin resistance protein	NA	S4TR35	Salmonella_phage	25.9	2.2e-18
VEA01720.1|1596006_1596543_+	bicyclomycin resistance protein	NA	NA	NA	NA	NA
VEA01721.1|1597027_1597249_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA01722.1|1597252_1598842_-	ABC-transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	2.1e-18
>prophage 6
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	1665960	1674527	4724014	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
VEA01786.1|1665960_1666908_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.9e-23
VEA01787.1|1666891_1667623_+	putative permease transmembrane component	NA	NA	NA	NA	NA
VEA01788.1|1667603_1667711_-	membrane protein	NA	NA	NA	NA	NA
VEA01789.1|1667770_1668502_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
VEA01790.1|1668724_1670410_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.6	2.9e-276
VEA01791.1|1670406_1671126_+	two-component system response regulator	NA	NA	NA	NA	NA
VEA01792.1|1671172_1671643_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	91.0	2.7e-75
VEA01793.1|1671794_1672253_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	74.5	2.0e-54
VEA01794.1|1672493_1674527_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.8e-55
>prophage 7
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	1736797	1745965	4724014		Enterobacteria_phage(42.86%)	9	NA	NA
VEA01905.1|1736797_1738201_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	26.1	6.8e-21
VEA01907.1|1738377_1739217_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	43.0	5.5e-42
VEA01909.1|1739649_1740735_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	6.1e-102
VEA01911.1|1740734_1741634_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	6.7e-30
VEA01913.1|1741681_1742560_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.5	1.6e-108
VEA01915.1|1742563_1743112_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
VEA01917.1|1743117_1744092_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
VEA01919.1|1744107_1744881_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
VEA01921.1|1744885_1745965_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	25.0	6.0e-17
>prophage 8
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	2182669	2193067	4724014	tRNA	Escherichia_phage(28.57%)	9	NA	NA
VEA02883.1|2182669_2183827_+	chemo-receptor protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.2	1.3e-09
VEA02885.1|2183969_2184953_+	membrane transport protein	NA	NA	NA	NA	NA
VEA02887.1|2185440_2186217_+	ATP-dependent RNA helicase	NA	A0A1V0SBR7	Catovirus	27.5	4.5e-22
VEA02889.1|2186245_2186815_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	37.5	6.6e-15
VEA02891.1|2186858_2187293_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	97.8	1.0e-47
VEA02893.1|2187258_2187795_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	97.0	2.7e-87
VEA02895.1|2188481_2191904_+	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	51.1	0.0e+00
VEA02897.1|2192241_2192580_+	Multidrug transporter emrE Efflux-multidrug resistance protein emrE; Methyl viologen resistance protein C; Ethidium resistance protein	NA	NA	NA	NA	NA
VEA02899.1|2192632_2193067_-	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
>prophage 9
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	2620149	2681472	4724014	holin,terminase,lysis,protease,tail,portal,head,tRNA	Salmonella_phage(38.46%)	73	NA	NA
VEA03865.1|2620149_2624310_-|protease	hemoglobin protease	protease	Q9LA54	Enterobacteria_phage	42.0	5.3e-303
VEA03867.1|2624795_2625173_+	phage-like protein	NA	NA	NA	NA	NA
VEA03869.1|2625787_2626390_+	phage-like protein	NA	NA	NA	NA	NA
VEA03871.1|2626373_2626877_+	phage-like protein	NA	NA	NA	NA	NA
VEA03873.1|2627350_2628424_+	invasion plasmid antigen / internalinputative	NA	NA	NA	NA	NA
VEA03875.1|2628578_2629721_+	invasion plasmid antigen / internalinputative	NA	NA	NA	NA	NA
VEA03877.1|2629798_2630011_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	1.5e-20
VEA03879.1|2630264_2630936_+	Gifsy-2 prophage protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	1.3e-81
VEA03881.1|2632905_2633313_-	Fels-2 prophage Tfa	NA	A0A1B0V844	Salmonella_phage	92.6	1.8e-67
VEA03883.1|2633319_2634534_-|tail	phage tail fiber protein	tail	A0A1B0V7G4	Salmonella_phage	39.5	3.0e-65
VEA03885.1|2635635_2635878_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA03887.1|2635916_2639279_-|tail	Phage tail fiber protein	tail	K7PKJ2	Enterobacteria_phage	80.5	0.0e+00
VEA03889.1|2639341_2639848_-|tail	tail protein	tail	A5LH42	Enterobacteria_phage	79.8	1.4e-69
VEA03891.1|2639886_2640624_-	Tail fiber component K	NA	K7PLW1	Enterobacteria_phage	84.2	1.3e-127
VEA03893.1|2640630_2641329_-|tail	Minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	3.2e-104
VEA03895.1|2641338_2641668_-|tail	tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
VEA03897.1|2641670_2644766_-|tail	tail protein	tail	A0A291AWX1	Escherichia_phage	60.6	5.1e-271
VEA03899.1|2644737_2645052_-|tail	minor tail-like protein	tail	A5LH37	Enterobacteria_phage	63.8	1.1e-30
VEA03901.1|2645072_2645468_-|tail	minor tail protein	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
VEA03903.1|2645519_2645855_-|tail	putative tail component of prophage	tail	A0A291AWU6	Escherichia_phage	69.4	8.9e-28
VEA03905.1|2645877_2646264_-|tail	putative tail component of prophage	tail	A5LH35	Enterobacteria_phage	83.6	5.9e-60
VEA03907.1|2646392_2646677_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	98.9	9.8e-44
VEA03909.1|2646673_2646958_-	Gifsy-1 prophagei VmtZ	NA	A5LH33	Enterobacteria_phage	78.7	6.8e-37
VEA03911.1|2647218_2647617_-|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	53.0	2.4e-27
VEA03913.1|2647627_2647987_-	DNA packaging protein	NA	NA	NA	NA	NA
VEA03915.1|2648120_2649074_-|head	head protein	head	C6ZCY2	Enterobacteria_phage	59.7	1.3e-103
VEA03917.1|2649128_2649476_-	Head decoration protein	NA	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
VEA03919.1|2649488_2650985_-	scaffold protein	NA	A0A0K2FI53	Enterobacteria_phage	52.7	4.3e-98
VEA03921.1|2650974_2652462_-|portal	phage portal protein, lambda family	portal	K7P6U7	Enterobacteria_phage	63.3	5.8e-180
VEA03923.1|2652454_2652757_-|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	73.8	4.9e-17
VEA03926.1|2652740_2654672_-|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	2.8e-259
VEA03928.1|2654643_2655189_-|terminase	terminase	terminase	A0A0U2S671	Escherichia_phage	79.9	2.5e-56
VEA03930.1|2655233_2655425_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA03932.1|2655447_2655897_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA03934.1|2656130_2656598_-|lysis	bacteriophage lysis protein	lysis	A0A0M4RD57	Salmonella_phage	81.0	3.7e-56
VEA03936.1|2656698_2657238_-	Phage endolysin R	NA	K7PLY1	Enterobacteria_phage	70.6	2.2e-76
VEA03938.1|2657215_2657524_-|holin	phage-holin analog protein	holin	NA	NA	NA	NA
VEA03940.1|2657709_2658255_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA03942.1|2658245_2658452_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA03944.1|2659315_2659873_-	antirepressor	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	5.8e-56
VEA03946.1|2660145_2660823_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.0	1.3e-62
VEA03948.1|2660819_2660960_-	DNA breaking-rejoining protein	NA	A0A0M5M7B2	Salmonella_phage	76.3	8.0e-07
VEA03950.1|2660956_2661568_-	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	98.0	3.6e-91
VEA03952.1|2661570_2661777_-	Phage protein	NA	S4TNP0	Salmonella_phage	98.5	4.6e-35
VEA03954.1|2661776_2662379_-	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
VEA03956.1|2662794_2663028_-	DNA damage-inducible protein I	NA	A0A0M4REN2	Salmonella_phage	85.7	6.0e-31
VEA03958.1|2663619_2664216_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA03960.1|2664227_2665205_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA03962.1|2665259_2665520_-	putative DNA methyl transferase	NA	NA	NA	NA	NA
VEA03964.1|2665516_2666161_-	Phage EaA protein	NA	H6WRY2	Salmonella_phage	40.5	5.3e-29
VEA03966.1|2666164_2666473_-	Uncharacterised protein	NA	A0A1P8DTP0	Salmonella_phage	71.6	1.6e-31
VEA03968.1|2666476_2666935_-	prophage protein	NA	S4TNP2	Salmonella_phage	77.4	7.1e-44
VEA03970.1|2666931_2667279_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	92.2	4.4e-54
VEA03972.1|2667289_2668039_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
VEA03974.1|2668041_2669019_-	regulatory protein	NA	H6WRX7	Salmonella_phage	99.0	4.7e-162
VEA03976.1|2669109_2669430_-	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
VEA03978.1|2669449_2669689_-	phage regulatory protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
VEA03980.1|2669808_2670219_+	regulatory protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
VEA03982.1|2670268_2670529_+	prophage protein	NA	NA	NA	NA	NA
VEA03984.1|2670521_2670680_+	DNA breaking-rejoining protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
VEA03986.1|2670764_2671052_+	Gifsy-1 prophage protein	NA	H6WRX2	Salmonella_phage	100.0	3.0e-48
VEA03988.1|2671178_2673890_+	exonuclease VIII	NA	H6WRX1	Salmonella_phage	44.7	1.7e-156
VEA03990.1|2673882_2674713_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
VEA03992.1|2674748_2675069_+	Uncharacterised protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
VEA03994.1|2675061_2675394_+	bacteriophage protein	NA	S4TNP2	Salmonella_phage	63.6	4.9e-10
VEA03996.1|2675390_2675894_+	Eaa protein	NA	A0A075B8H2	Enterobacteria_phage	92.3	6.0e-36
VEA03998.1|2675943_2676180_+	excisionase	NA	NA	NA	NA	NA
VEA04000.1|2676169_2677312_+	Integrase	NA	O21929	Phage_21	80.3	8.2e-174
VEA04002.1|2677425_2678676_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
VEA04004.1|2678775_2679513_+	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
VEA04006.1|2679509_2679839_+	putative secreted protein	NA	NA	NA	NA	NA
VEA04008.1|2679850_2680312_+	mutT family protein	NA	NA	NA	NA	NA
VEA04010.1|2680365_2681472_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
>prophage 10
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	2903487	2913378	4724014	tRNA	Escherichia_phage(57.14%)	8	NA	NA
VEA04469.1|2903487_2904105_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.1	1.6e-75
VEA04471.1|2904115_2905174_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.7	1.7e-93
VEA04473.1|2905151_2905763_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	53.7	8.8e-58
VEA04475.1|2905791_2906562_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.2	1.8e-52
VEA04477.1|2906799_2908092_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-94
VEA04479.1|2908350_2909697_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	40.9	2.1e-80
VEA04481.1|2909702_2910314_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEA04482.1|2910456_2913378_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.1e-88
>prophage 11
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	2925058	2931434	4724014	protease	Vibrio_phage(16.67%)	7	NA	NA
VEA04507.1|2925058_2925241_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2I7SAX5	Vibrio_phage	53.7	2.0e-05
VEA04509.1|2925248_2926832_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	48.4	5.0e-145
VEA04511.1|2926994_2927246_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	NA	NA	NA	NA
VEA04513.1|2927367_2927610_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.9	6.4e-12
VEA04515.1|2928012_2928234_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
VEA04517.1|2928372_2930319_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	41.9	1.2e-39
VEA04519.1|2930315_2931434_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.1e-08
>prophage 12
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	3343969	3401847	4724014	transposase,protease,tRNA	Bacillus_phage(23.08%)	59	NA	NA
VEA05425.1|3343969_3344887_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
VEA05427.1|3344883_3345336_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
VEA05429.1|3345336_3345753_-	copper efflux regulator	NA	NA	NA	NA	NA
VEA05431.1|3345862_3347137_+	Lead cadmium zinc and mercury transporting ATPase	NA	NA	NA	NA	NA
VEA05433.1|3347111_3348365_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	41.6	4.8e-66
VEA05435.1|3349500_3349980_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
VEA05437.1|3350103_3351756_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
VEA05439.1|3352044_3352797_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
VEA05441.1|3352786_3353056_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
VEA05443.1|3353367_3354507_+	transport protein	NA	NA	NA	NA	NA
VEA05445.1|3354472_3354790_+	transport protein	NA	NA	NA	NA	NA
VEA05447.1|3355166_3356471_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
VEA05449.1|3356623_3357595_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
VEA05451.1|3357591_3357993_-	ferrochelatase	NA	NA	NA	NA	NA
VEA05453.1|3358105_3358555_-	ferrochelatase	NA	NA	NA	NA	NA
VEA05455.1|3358756_3359242_-	adenylate kinase	NA	NA	NA	NA	NA
VEA05457.1|3359216_3359402_-	adenylate kinase	NA	NA	NA	NA	NA
VEA05459.1|3359643_3361518_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.1	3.4e-116
VEA05461.1|3361628_3362234_-	recombination protein RecR	NA	NA	NA	NA	NA
VEA05463.1|3362233_3362563_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
VEA05465.1|3364650_3365202_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
VEA05467.1|3365354_3365732_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
VEA05469.1|3365812_3366328_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
VEA05471.1|3366341_3366509_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA05473.1|3366578_3367514_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	52.5	2.5e-64
VEA05475.1|3367555_3370918_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA05477.1|3371036_3371690_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
VEA05479.1|3371831_3373025_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
VEA05481.1|3373047_3374748_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA05483.1|3374770_3375280_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA05484.1|3375369_3376152_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA05486.1|3376698_3377073_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
VEA05488.1|3377100_3377319_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
VEA05490.1|3377497_3378049_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VEA05491.1|3378165_3378636_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA05493.1|3378836_3379097_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEA05495.1|3379321_3380872_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
VEA05497.1|3381180_3381492_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
VEA05499.1|3381524_3382094_-	lipoprotein	NA	NA	NA	NA	NA
VEA05501.1|3382308_3383169_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
VEA05503.1|3383268_3384555_-	ammonium transporter	NA	NA	NA	NA	NA
VEA05505.1|3384586_3384925_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
VEA05507.1|3385138_3385453_-	Multidrug resistance-like ATP-binding protein mdlB	NA	NA	NA	NA	NA
VEA05509.1|3385442_3385958_-	Multidrug resistance-like ATP-binding protein mdlB	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.8	1.3e-09
VEA05511.1|3385962_3386922_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	24.0	3.3e-11
VEA05513.1|3386914_3388687_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.6	1.8e-50
VEA05515.1|3388727_3389186_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA05517.1|3389298_3390354_+	lyase	NA	NA	NA	NA	NA
VEA05519.1|3390403_3390625_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
VEA05521.1|3390765_3391224_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
VEA05523.1|3391324_3393025_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEA05525.1|3393089_3393785_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	2.7e-87
VEA05527.1|3393890_3394289_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
VEA05529.1|3394392_3394767_-	competence protein ComEA	NA	NA	NA	NA	NA
VEA05531.1|3394916_3396788_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEA05533.1|3397078_3397351_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
VEA05535.1|3397559_3399914_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	7.2e-225
VEA05537.1|3400099_3401371_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	2.5e-131
VEA05539.1|3401622_3401847_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	54.7	7.5e-15
>prophage 13
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	3698105	3746430	4724014	bacteriocin,tRNA	Bacillus_virus(16.67%)	52	NA	NA
VEA06150.1|3698105_3699047_+|tRNA	glutamyl-Q tRNA(Asp) synthetase	tRNA	NA	NA	NA	NA
VEA06152.1|3699188_3701258_+	poly(A) polymerase	NA	G3MAR3	Bacillus_virus	35.9	4.0e-25
VEA06154.1|3701712_3702966_+	putative fimbrial protein	NA	NA	NA	NA	NA
VEA06156.1|3703078_3703873_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
VEA06158.1|3703998_3704850_+	pantoate:beta-alanine ligase	NA	NA	NA	NA	NA
VEA06160.1|3705517_3705898_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
VEA06162.1|3706222_3706825_+	fimbrial protein StkA	NA	NA	NA	NA	NA
VEA06164.1|3706905_3707649_+	fimbrial assembly chaperone protein StcB	NA	NA	NA	NA	NA
VEA06166.1|3707714_3708377_+	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VEA06168.1|3708447_3710313_+	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VEA06170.1|3710329_3710941_+	fimbrial protein	NA	NA	NA	NA	NA
VEA06172.1|3710967_3711510_+	fimbrial protein	NA	NA	NA	NA	NA
VEA06174.1|3711566_3712157_+	fimbrial protein	NA	NA	NA	NA	NA
VEA06176.1|3712182_3712734_+	fimbrial protein	NA	NA	NA	NA	NA
VEA06177.1|3712752_3713343_+	fimbrial protein	NA	NA	NA	NA	NA
VEA06179.1|3713354_3714425_+	fimbrial protein	NA	NA	NA	NA	NA
VEA06181.1|3714425_3715655_-	polysaccharide deacetylase domain protein	NA	NA	NA	NA	NA
VEA06183.1|3715715_3716156_-	PTS system IIA component	NA	NA	NA	NA	NA
VEA06185.1|3716261_3717032_-	ABC transporter	NA	NA	NA	NA	NA
VEA06187.1|3717028_3717955_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.2	2.6e-21
VEA06189.1|3718063_3718726_+	carbonic anhydrase	NA	NA	NA	NA	NA
VEA06191.1|3718783_3719320_-	Hypoxanthine-guanine phosphoribosyl transferase	NA	A0A218MMB5	uncultured_virus	33.1	7.8e-18
VEA06193.1|3719525_3721916_+	glucose dehydrogenase	NA	NA	NA	NA	NA
VEA06195.1|3721993_3723604_-	Blue copper oxidase CueO	NA	A0A0C6DWA2	Mamastrovirus	59.8	3.0e-20
VEA06197.1|3723766_3724153_+	lipoprotein, PulS/OutS family	NA	NA	NA	NA	NA
VEA06199.1|3724259_3724718_+	spermidine synthase	NA	NA	NA	NA	NA
VEA06201.1|3724668_3725121_+	spermidine synthase	NA	NA	NA	NA	NA
VEA06203.1|3725141_3725936_+	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA	NA
VEA06205.1|3725965_3726733_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	35.7	2.8e-29
VEA06207.1|3726742_3727726_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
VEA06209.1|3727715_3728801_-	membrane protein	NA	NA	NA	NA	NA
VEA06211.1|3728775_3728988_-	Dihydrodipicolinate synthase	NA	NA	NA	NA	NA
VEA06213.1|3728984_3729284_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
VEA06215.1|3729256_3729679_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
VEA06217.1|3729810_3729942_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
VEA06219.1|3730177_3730540_-	protein YacL	NA	NA	NA	NA	NA
VEA06221.1|3730512_3731934_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
VEA06223.1|3731899_3732106_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
VEA06225.1|3732056_3733328_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
VEA06227.1|3733752_3735303_+	membrane protein	NA	NA	NA	NA	NA
VEA06229.1|3735315_3736107_+	probable secreted protein	NA	NA	NA	NA	NA
VEA06231.1|3736144_3736429_-	putative secreted protein	NA	NA	NA	NA	NA
VEA06233.1|3736764_3738189_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.1	1.2e-41
VEA06235.1|3738390_3740280_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
VEA06237.1|3740294_3742958_-	pyruvate dehydrogenase E1 component	NA	NA	NA	NA	NA
VEA06239.1|3743117_3743882_-	pyruvate dehydrogenase complex repressor	NA	NA	NA	NA	NA
VEA06241.1|3744333_3744624_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA06243.1|3744693_3744984_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA06245.1|3745053_3745344_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA06247.1|3745413_3745710_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA06249.1|3745779_3746070_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VEA06251.1|3746139_3746430_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 14
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	4322280	4366310	4724014	plate,tail,tRNA	Burkholderia_phage(31.58%)	50	NA	NA
VEA07440.1|4322280_4323279_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
VEA07442.1|4323367_4324678_-	conjugative transfer protein	NA	NA	NA	NA	NA
VEA07444.1|4324924_4325440_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
VEA07446.1|4325538_4325751_-	stress-response protein	NA	NA	NA	NA	NA
VEA07448.1|4325769_4327206_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
VEA07450.1|4327384_4327993_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
VEA07452.1|4328101_4328470_-	diacylglycerol kinase	NA	NA	NA	NA	NA
VEA07454.1|4328767_4331062_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
VEA07456.1|4331172_4332045_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
VEA07458.1|4332058_4332556_-	chorismate lyase	NA	NA	NA	NA	NA
VEA07460.1|4332738_4333656_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
VEA07462.1|4333819_4335178_-	maltoporin	NA	NA	NA	NA	NA
VEA07465.1|4335265_4335766_-	maltose/maltodextrin transport ATP-binding protein	NA	NA	NA	NA	NA
VEA07467.1|4335725_4336376_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	51.6	4.3e-10
VEA07469.1|4336501_4336825_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
VEA07471.1|4336883_4337672_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
VEA07473.1|4337692_4337929_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
VEA07475.1|4338060_4339605_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
VEA07477.1|4339619_4340510_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
VEA07479.1|4340539_4340752_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA07481.1|4340851_4342327_+	D-xylose transporter XylE	NA	NA	NA	NA	NA
VEA07483.1|4342372_4342783_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
VEA07485.1|4342924_4345021_-	lipoprotein	NA	NA	NA	NA	NA
VEA07487.1|4345020_4345758_-	putative lipoprotein	NA	NA	NA	NA	NA
VEA07489.1|4345754_4346393_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
VEA07491.1|4346456_4346702_-	YjbE secreted protein	NA	NA	NA	NA	NA
VEA07493.1|4347260_4348793_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
VEA07495.1|4349181_4350531_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
VEA07497.1|4350665_4351013_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
VEA07499.1|4351589_4351877_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	49.1	1.8e-16
VEA07501.1|4351879_4352485_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	58.3	6.7e-58
VEA07503.1|4352497_4352812_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	4.9e-20
VEA07505.1|4352971_4353427_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA07507.1|4353423_4353621_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	5.1e-07
VEA07509.1|4353610_4355026_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	67.2	3.1e-178
VEA07511.1|4355025_4355550_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	69.0	3.1e-67
VEA07513.1|4355601_4355919_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA07515.1|4356100_4358386_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	28.8	4.6e-67
VEA07517.1|4358385_4359006_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	53.8	3.2e-39
VEA07519.1|4358971_4359340_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
VEA07521.1|4359339_4359549_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
VEA07523.1|4359536_4360577_+	gp21	NA	A4JWL3	Burkholderia_virus	45.6	8.8e-74
VEA07525.1|4360586_4361099_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	43.0	1.2e-12
VEA07527.1|4361064_4361226_+|plate	baseplate protein	plate	NA	NA	NA	NA
VEA07529.1|4361323_4361683_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	1.4e-34
VEA07531.1|4363416_4363545_+|tail	tail protein	tail	NA	NA	NA	NA
VEA07533.1|4363510_4363957_+|tail	tail protein	tail	A0A0A7RTP0	Clostridium_phage	49.6	8.5e-34
VEA07535.1|4364015_4364564_+	gp19	NA	A0A0A7NV63	Enterobacteria_phage	70.5	1.4e-06
VEA07537.1|4364576_4365092_+|tail	tail assembly chaperone gp38	tail	A0A0U2QV64	Escherichia_phage	35.6	8.0e-28
VEA07539.1|4365581_4366310_+	cytoplasmic protein	NA	A0A077SLK3	Escherichia_phage	36.0	1.6e-34
>prophage 15
LR134141	Salmonella enterica subsp. salamae strain NCTC5773 genome assembly, chromosome: 1	4724014	4644869	4650984	4724014		Bacillus_phage(28.57%)	8	NA	NA
VEA08038.1|4644869_4645199_-	thioredoxin	NA	A0A1V0SD63	Indivirus	38.5	4.2e-14
VEA08040.1|4645342_4645807_+	ATP-dependent RNA helicase	NA	A0A2H4UVC7	Bodo_saltans_virus	32.8	1.2e-06
VEA08042.1|4645850_4646609_+	ATP-dependent RNA helicase	NA	E3T5E1	Cafeteria_roenbergensis_virus	33.5	2.6e-19
VEA08043.1|4646617_4648102_+	guanosine pentaphosphate phosphohydrolase	NA	NA	NA	NA	NA
VEA08044.1|4648131_4649634_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	36.6	3.8e-78
VEA08045.1|4649630_4650155_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	43.6	8.4e-25
VEA08046.1|4650254_4650587_-	intergral membrane NMN transport protein PnuC	NA	A0A2I7SAC7	Vibrio_phage	30.5	5.6e-06
VEA08047.1|4650525_4650984_-	intergral membrane NMN transport protein PnuC	NA	A0A126HGA3	Vibrio_phage	35.7	3.2e-12
