The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	88385	97054	4737887	capsid	Enterobacteria_phage(85.71%)	10	NA	NA
VEA14632.1|88385_89576_-	ATP-binding protein	NA	C7BGE8	Burkholderia_phage	33.3	3.5e-10
VEA14633.1|90253_90598_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA14634.1|91252_93586_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	83.5	0.0e+00
VEA14635.1|93600_93921_-	putative prophage protein	NA	NA	NA	NA	NA
VEA14636.1|93917_94145_-	bacteriophage protein	NA	NA	NA	NA	NA
VEA14637.1|94141_94336_-	CI repressor	NA	Q7M2A7	Enterobacteria_phage	87.1	1.4e-22
VEA14638.1|94686_94953_-	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	71.6	1.5e-30
VEA14639.1|95491_96229_+|capsid	bacteriophage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	65.3	9.0e-81
VEA14640.1|96225_96471_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	75.3	2.4e-30
VEA14641.1|96487_97054_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.3	3.7e-58
>prophage 2
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	579784	603859	4737887	tRNA,protease	Phaeocystis_globosa_virus(14.29%)	23	NA	NA
VEA15176.1|579784_580387_+|protease	ATP-dependent metalloprotease	protease	R4TQL5	Phaeocystis_globosa_virus	49.3	2.5e-12
VEA15177.1|580473_581148_+|protease	ATP-dependent metalloprotease	protease	G9E4U6	Ostreococcus_lucimarinus_virus	59.5	4.0e-43
VEA15178.1|581086_581413_+|protease	ATP-dependent metalloprotease	protease	E5ESM9	Bathycoccus_sp._RCC1105_virus	50.6	1.7e-15
VEA15179.1|581405_581732_+|protease	ATP-dependent metalloprotease	protease	NA	NA	NA	NA
VEA15180.1|581836_582106_+	dihydropteroate synthase	NA	NA	NA	NA	NA
VEA15181.1|582147_582687_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	34.4	1.1e-08
VEA15182.1|582679_584017_+	PGM/PMM family protein	NA	NA	NA	NA	NA
VEA15183.1|584239_584572_+	Protein-export membrane protein secG	NA	NA	NA	NA	NA
VEA15184.1|584868_586212_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	92.9	3.1e-63
VEA15185.1|586869_587292_+	ribosome maturation protein RimP	NA	NA	NA	NA	NA
VEA15186.1|587319_588822_+	L factor	NA	NA	NA	NA	NA
VEA15187.1|588846_591525_+	protein chain initiation factor 2	NA	E3T4N3	Cafeteria_roenbergensis_virus	26.3	3.3e-24
VEA15188.1|591746_592148_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VEA15189.1|592147_593092_+|tRNA	tRNA pseudouridine 55 synthase	tRNA	NA	NA	NA	NA
VEA15190.1|593723_595889_+	Polyribonucleotide nucleotidyl transferase	NA	NA	NA	NA	NA
VEA15191.1|595998_596883_+	Lipoprotein nlpI precursor	NA	NA	NA	NA	NA
VEA15192.1|597061_598951_+	ATP-dependent RNA helicase DeaD	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	30.8	7.7e-52
VEA15193.1|599104_600349_+	tryptophan permease	NA	NA	NA	NA	NA
VEA15194.1|600409_600940_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA15195.1|601098_601818_+	transpeptidase	NA	NA	NA	NA	NA
VEA15196.1|601795_602215_-	monooxygenase	NA	NA	NA	NA	NA
VEA15197.1|602979_603093_-|protease	putative protease	protease	NA	NA	NA	NA
VEA15198.1|603085_603859_-|protease	putative protease	protease	NA	NA	NA	NA
>prophage 3
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	663257	678007	4737887	tail,integrase	Salmonella_phage(35.71%)	18	657324:657347	682006:682029
657324:657347	attL	GATAAGCGCAGCGCCATCAGGCAA	NA	NA	NA	NA
VEA15264.1|663257_664823_+	Methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.0	2.0e-13
VEA15265.1|664819_665464_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA15266.1|665698_666466_+	siderophore-interacting protein	NA	NA	NA	NA	NA
VEA15267.1|666776_667796_-	FRG domain	NA	A0A1S6KZX9	Salmonella_phage	23.7	2.6e-09
VEA15268.1|667831_668833_-|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	96.4	2.7e-189
VEA15269.1|668885_669407_-	repressor protein	NA	A0A218M4J1	Erwinia_phage	55.3	3.2e-48
VEA15270.1|669539_669815_+	phage regulatory protein	NA	A0A218M4I5	Erwinia_phage	89.4	7.8e-38
VEA15271.1|669835_670345_+	phage regulatory protein	NA	A0A0M4QWN1	Salmonella_phage	96.4	1.5e-87
VEA15272.1|670352_670553_+	bacteriophage protein	NA	Q6K1F7	Salmonella_virus	87.9	2.9e-26
VEA15273.1|670516_670780_+|tail	phage tail tape measure protein	tail	A0A218M4I7	Erwinia_phage	68.6	2.0e-06
VEA15274.1|670776_670968_+	gp24	NA	A0A0M3UL85	Salmonella_phage	98.0	1.4e-22
VEA15275.1|670967_671330_+	Uncharacterized 72.8 kDa protein in lys 3'region ORF27	NA	S4TP64	Salmonella_phage	98.3	3.3e-60
VEA15276.1|671344_672871_+	phage late control gene D	NA	A0A0M5M5V5	Salmonella_phage	98.5	1.5e-175
VEA15277.1|673062_673281_+	phage late control gene	NA	A0A2I8TV89	Erwinia_phage	98.6	9.5e-39
VEA15278.1|673634_674141_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
VEA15279.1|674263_675217_-	RNA polymerase sigma-70 factor	NA	A0A2I7SAT0	Vibrio_phage	33.7	4.3e-35
VEA15280.1|675179_676247_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
VEA15281.1|676261_678007_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
682006:682029	attR	GATAAGCGCAGCGCCATCAGGCAA	NA	NA	NA	NA
>prophage 4
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	846956	854704	4737887	tRNA,integrase	Brevibacillus_phage(16.67%)	8	846767:846780	851897:851910
846767:846780	attL	GCCGAGGATATCGC	NA	NA	NA	NA
VEA15464.1|846956_847853_+|integrase	site-specific integrase/recombinase	integrase	A0A0K2CP59	Brevibacillus_phage	28.9	1.4e-30
VEA15465.1|847876_848590_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
VEA15466.1|848595_850329_+	single-stranded DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	29.4	8.1e-64
VEA15467.1|850650_851532_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	1.5e-05
VEA15468.1|851541_852729_+|tRNA	lysyl tRNA synthetase	tRNA	A0A2K9L3L6	Tupanvirus	34.3	2.1e-55
851897:851910	attR	GCGATATCCTCGGC	NA	NA	NA	NA
VEA15469.1|852730_853060_+|tRNA	lysyl tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	54.7	1.4e-25
VEA15470.1|853135_853681_-	isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA	NA
VEA15471.1|853945_854704_+	possible lipoprotein	NA	I2E8W3	Clostridium_phage	39.5	1.2e-11
>prophage 5
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	981601	989274	4737887		Escherichia_phage(88.89%)	13	NA	NA
VEA15596.1|981601_982594_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
VEA15597.1|982638_982875_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA	NA
VEA15598.1|982885_984313_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA	NA
VEA15599.1|984312_984906_-	decarboxylase	NA	NA	NA	NA	NA
VEA15600.1|985076_985481_+	Transcriptional regulator hosA	NA	NA	NA	NA	NA
VEA15601.1|985499_986264_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.5	1.1e-70
VEA15602.1|986460_986712_+	D-beta-hydroxybutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	65.8	2.1e-18
VEA15603.1|986752_987385_+	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	83.2	2.6e-84
VEA15604.1|987378_987684_+	membrane protein	NA	A0A077SLJ7	Escherichia_phage	74.4	5.2e-27
VEA15605.1|987683_988163_+	membrane protein	NA	A0A077SLJ7	Escherichia_phage	54.2	1.4e-34
VEA15606.1|988275_988638_+	YgbK domain protein	NA	A0A077SLJ7	Escherichia_phage	62.1	1.6e-30
VEA15607.1|988634_989066_+	sugar aldolase	NA	A0A077SK32	Escherichia_phage	76.1	2.5e-46
VEA15608.1|989016_989274_+	sugar aldolase	NA	A0A077SK32	Escherichia_phage	72.6	6.2e-29
>prophage 6
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	1073427	1080654	4737887	tRNA	Pseudomonas_phage(16.67%)	9	NA	NA
VEA15706.1|1073427_1073925_+	competence damage-inducible protein A	NA	B5TK85	Pseudomonas_phage	51.6	4.4e-31
VEA15707.1|1074009_1075071_+	recombinase A	NA	A0A2D1GPX2	Mycobacterium_phage	63.8	3.0e-114
VEA15708.1|1075148_1075688_+	Regulatory protein recX	NA	NA	NA	NA	NA
VEA15709.1|1076007_1076400_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	56.8	5.3e-24
VEA15710.1|1076433_1077453_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A2K9L1X7	Tupanvirus	36.5	3.9e-42
VEA15711.1|1077476_1077764_+|tRNA	alanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEA15712.1|1077760_1078546_+|tRNA	alanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEA15713.1|1078780_1078966_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
VEA15714.1|1080087_1080654_+	Phosphatase YqaB	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
>prophage 7
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	1281615	1338526	4737887	tRNA,integrase,protease,transposase	Escherichia_phage(38.46%)	51	1296310:1296326	1343809:1343825
VEA15902.1|1281615_1282092_+|tRNA	histidyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEA15903.1|1282213_1282891_+|tRNA	histidyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEA15904.1|1282904_1283525_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEA15905.1|1283535_1284714_+	lipoprotein	NA	NA	NA	NA	NA
VEA15906.1|1284830_1286303_+	GTP-binding protein EngA	NA	NA	NA	NA	NA
VEA15907.1|1286391_1286613_+	Protein of uncharacterised function (DUF1407)	NA	NA	NA	NA	NA
VEA15908.1|1286958_1289151_+	intimin	NA	NA	NA	NA	NA
VEA15909.1|1289208_1289598_+	membrane protein	NA	NA	NA	NA	NA
VEA15910.1|1289636_1289918_+	membrane protein	NA	NA	NA	NA	NA
VEA15911.1|1290315_1290795_+	outer membrane protein RatA	NA	NA	NA	NA	NA
VEA15912.1|1290791_1291085_+	outer membrane protein RatA	NA	NA	NA	NA	NA
VEA15913.1|1291074_1291407_+	outer membrane protein RatA	NA	NA	NA	NA	NA
VEA15914.1|1291774_1292194_+	putative exported protein (RatA)	NA	NA	NA	NA	NA
VEA15915.1|1292243_1293038_+	outer membrane protein RatA	NA	NA	NA	NA	NA
VEA15916.1|1293009_1293531_+	outer membrane protein RatA	NA	NA	NA	NA	NA
VEA15917.1|1293527_1293677_+	putative exported protein (RatA)	NA	NA	NA	NA	NA
VEA15918.1|1294285_1295908_+	putative exported protein (RatA)	NA	NA	NA	NA	NA
VEA15919.1|1296073_1300216_+	outer membrane protein RatB	NA	NA	NA	NA	NA
1296310:1296326	attL	CAGCCAGTTCAGCACCA	NA	NA	NA	NA
VEA15920.1|1300671_1303383_+	outer membrane protein RatB	NA	NA	NA	NA	NA
VEA15921.1|1304043_1310196_+	host colonisation factor (ShdA)	NA	A0A2L1IV18	Escherichia_phage	24.7	2.0e-24
VEA15922.1|1310357_1311707_-	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	36.0	3.3e-41
VEA15923.1|1311867_1313334_+	inosine 5'-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.7	4.0e-88
VEA15924.1|1313403_1314981_+	GMP synthase	NA	NA	NA	NA	NA
VEA15925.1|1315194_1315602_+	site-specific recombinase	NA	G9L697	Escherichia_phage	76.3	1.7e-49
VEA15926.1|1315623_1316451_+|integrase	putative phage integrase (pseudogene)	integrase	A0A1X9TCT6	Enterobacter_phage	70.8	5.7e-108
VEA15927.1|1316520_1317057_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA15928.1|1317283_1318222_-|transposase	transposase IS116	transposase	NA	NA	NA	NA
VEA15929.1|1318659_1318785_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VEA15930.1|1318803_1319283_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.2	1.0e-05
VEA15931.1|1319503_1320514_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA15932.1|1320957_1321443_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA15933.1|1321745_1321979_+	phage-like protein	NA	NA	NA	NA	NA
VEA15934.1|1322009_1322342_+	phage-like protein	NA	NA	NA	NA	NA
VEA15935.1|1322799_1323543_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA15936.1|1323776_1324316_-	Hydrocephalus-inducing protein Hy-3	NA	G9L6F0	Escherichia_phage	77.7	1.0e-25
VEA15937.1|1324492_1324846_-	outer membrane lipoprotein	NA	G9L6F1	Escherichia_phage	80.6	1.1e-07
VEA15938.1|1325085_1325277_-	membrane protein	NA	G9L6F2	Escherichia_phage	84.1	6.4e-23
VEA15939.1|1325689_1326481_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
VEA15940.1|1326813_1327344_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
VEA15941.1|1327291_1327681_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
VEA15942.1|1327658_1327910_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
VEA15943.1|1327945_1329415_-	exopolyphosphatase	NA	NA	NA	NA	NA
VEA15944.1|1329363_1331559_-	polyphosphate kinase	NA	NA	NA	NA	NA
VEA15945.1|1331747_1332386_-	phosphoribosylglycinamidine myltransferase	NA	E3SNR5	Prochlorococcus_phage	43.4	9.6e-31
VEA15946.1|1332413_1333424_-	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	41.1	1.3e-66
VEA15947.1|1333837_1334464_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
VEA15948.1|1334712_1335840_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.9	7.3e-50
VEA15949.1|1335910_1336636_+	Chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
VEA15950.1|1336662_1337022_-	arsenate reductase (arsenical pump modifier)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	45.6	1.1e-18
VEA15951.1|1337061_1337676_-|protease	Exported zinc metalloprotease YfgC precursor	protease	NA	NA	NA	NA
VEA15952.1|1337656_1338526_-|protease	Exported zinc metalloprotease YfgC precursor	protease	NA	NA	NA	NA
1343809:1343825	attR	CAGCCAGTTCAGCACCA	NA	NA	NA	NA
>prophage 8
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	1602656	1616408	4737887	holin,tail,protease,head	Salmonella_phage(38.46%)	14	NA	NA
VEA16250.1|1602656_1603448_+|tail	side tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
VEA16251.1|1604116_1606483_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
VEA16252.1|1606482_1606584_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA16253.1|1606573_1606804_+	DNA-binding protein	NA	Q8HA92	Salmonella_phage	100.0	5.0e-38
VEA16254.1|1606811_1607801_+	putative cytoplasmic protein	NA	A0A1C9IHZ5	Salmonella_phage	97.0	1.7e-188
VEA16255.1|1607818_1608184_+	phage antiterminator	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
VEA16256.1|1608212_1609544_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
VEA16257.1|1609840_1610092_+|holin	holin	holin	Q8SBE1	Shigella_phage	94.6	3.0e-36
VEA16258.1|1610184_1610703_+|head,protease	phage pro-head protease	head,protease	Q8SBH9	Shigella_phage	88.0	5.2e-75
VEA16259.1|1610763_1612005_+	bacteriophage protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
VEA16260.1|1612007_1612535_+|tail	tail protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
VEA16261.1|1612912_1613356_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
VEA16262.1|1613409_1615239_-	acetylase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
VEA16263.1|1615736_1616408_+	DNA polymerase V subunit	NA	Q1MVE7	Enterobacteria_phage	71.3	1.3e-49
>prophage 9
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	1688459	1697631	4737887	tRNA	Enterobacteria_phage(71.43%)	11	NA	NA
VEA16344.1|1688459_1689407_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.4	6.2e-10
VEA16345.1|1689390_1690122_+	putative permease transmembrane component	NA	NA	NA	NA	NA
VEA16346.1|1690102_1690210_-	membrane protein	NA	NA	NA	NA	NA
VEA16347.1|1690244_1691009_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.6	1.7e-98
VEA16348.1|1691223_1692642_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	93.8	2.0e-225
VEA16349.1|1692610_1692910_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	82.8	4.3e-42
VEA16350.1|1692994_1693627_+	two-component system response regulator	NA	NA	NA	NA	NA
VEA16351.1|1693673_1694141_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
VEA16352.1|1694310_1694727_-	lipoprotein	NA	NA	NA	NA	NA
VEA16353.1|1694898_1695357_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
VEA16354.1|1695597_1697631_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 10
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	1765898	1775062	4737887		Enterobacteria_phage(42.86%)	10	NA	NA
VEA16477.1|1765898_1767302_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	27.2	5.2e-21
VEA16479.1|1767478_1768372_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
VEA16481.1|1768748_1769279_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	49.1	8.3e-20
VEA16483.1|1769407_1769833_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.8	2.7e-37
VEA16485.1|1769832_1770732_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
VEA16487.1|1770912_1771659_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.1	6.5e-87
VEA16489.1|1772215_1773133_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
VEA16491.1|1773203_1773878_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
VEA16492.1|1773867_1773978_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
VEA16494.1|1773982_1775062_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
>prophage 11
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	1891967	1903953	4737887		Enterobacteria_phage(37.5%)	16	NA	NA
VEA16757.1|1891967_1892387_+	umuDC operon protein-like protein	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
VEA16759.1|1893173_1893668_+	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	88.4	1.8e-61
VEA16761.1|1894745_1895180_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	50.9	1.8e-17
VEA16763.1|1895176_1895308_-	outer membrane protein N	NA	NA	NA	NA	NA
VEA16765.1|1895337_1895448_-	outer membrane protein N	NA	NA	NA	NA	NA
VEA16767.1|1895410_1895596_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	61.5	1.8e-06
VEA16769.1|1895570_1896017_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	65.7	1.0e-47
VEA16771.1|1896669_1896969_+	membrane protein	NA	NA	NA	NA	NA
VEA16773.1|1897134_1897695_+	metal-dependent phospho hydrolase	NA	NA	NA	NA	NA
VEA16775.1|1897832_1898060_+	DNA-cytosine methyltransferase	NA	NA	NA	NA	NA
VEA16777.1|1898040_1899264_+	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	8.7e-105
VEA16779.1|1899244_1899715_+	patch repair protein	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
VEA16781.1|1899703_1900624_-	inner membrane transporter yedA	NA	NA	NA	NA	NA
VEA16783.1|1900799_1901753_+	integral membrane protein	NA	NA	NA	NA	NA
VEA16785.1|1901787_1901973_+	Uncharacterized small protein	NA	NA	NA	NA	NA
VEA16787.1|1902138_1903953_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	35.5	7.2e-15
>prophage 12
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	1974258	2069495	4737887	tail,protease,transposase,integrase,terminase,tRNA	Escherichia_phage(12.12%)	115	2013989:2014006	2023166:2023183
VEA16956.1|1974258_1975002_-|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA	F5B419	Synechococcus_phage	30.9	5.4e-25
VEA16958.1|1975042_1975438_-	membrane protein	NA	NA	NA	NA	NA
VEA16960.1|1975490_1976309_-	Protein of uncharacterised function DUF72	NA	Q859D1	Escherichia_coli_phage	80.3	4.5e-57
VEA16962.1|1976305_1976872_-	putative isochorismatase hydrolase	NA	NA	NA	NA	NA
VEA16964.1|1977196_1978969_+|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEA16966.1|1979071_1979524_+	dATP pyrophosphohydrolase	NA	NA	NA	NA	NA
VEA16968.1|1979553_1980294_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA	NA
VEA16970.1|1980330_1980852_+	crossover junction endodeoxyribonuclease	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
VEA16972.1|1980853_1981303_-	protein yebB	NA	NA	NA	NA	NA
VEA16974.1|1981662_1982355_+	membrane protein	NA	NA	NA	NA	NA
VEA16976.1|1982714_1983326_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA	NA
VEA16978.1|1983425_1984346_+	Holliday junction DNA helicase	NA	A0A127AWE7	Bacillus_phage	25.9	1.2e-05
VEA16980.1|1984424_1985210_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA	NA
VEA16982.1|1985206_1985962_-	high-affinity zinc transporter ATPase	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
VEA16984.1|1985983_1986733_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA	NA
VEA16986.1|1986999_1988220_+	Cell wall endopeptidase family M23/M37	NA	I2E8W3	Clostridium_phage	44.0	1.2e-08
VEA16988.1|1988433_1988781_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
VEA16990.1|1988809_1989406_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
VEA16991.1|1989478_1990921_-	pyruvate kinase A	NA	NA	NA	NA	NA
VEA16993.1|1991043_1991913_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
VEA16995.1|1992254_1993730_+	glucose 6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
VEA16997.1|1993964_1995032_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
VEA16999.1|1995031_1995151_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
VEA17001.1|1995257_1995710_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
VEA17003.1|1995814_1996456_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
VEA17005.1|1996555_1997734_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
VEA17007.1|1997864_1998155_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA	NA
VEA17009.1|1998222_1998576_+	protein YebF	NA	NA	NA	NA	NA
VEA17011.1|1998669_1999389_+	inner membrane protein YebE	NA	NA	NA	NA	NA
VEA17013.1|1999540_2001592_+	oligopeptidase	NA	NA	NA	NA	NA
VEA17015.1|2001628_2002327_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
VEA17017.1|2002350_2003007_-	Putative amido hydrolase	NA	NA	NA	NA	NA
VEA17019.1|2003114_2003345_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
VEA17021.1|2003482_2003857_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
VEA17023.1|2004083_2004734_+	membrane protein	NA	NA	NA	NA	NA
VEA17025.1|2004750_2004948_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
VEA17027.1|2005485_2006565_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.7	1.5e-100
VEA17029.1|2006890_2007307_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17031.1|2007303_2007504_-	methyltransferase	NA	K7PJT8	Enterobacteria_phage	80.0	7.1e-25
VEA17033.1|2007445_2007820_-	Uncharacterised protein	NA	A0A222YY67	Escherichia_phage	59.8	2.1e-33
VEA17035.1|2007855_2008686_-	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
VEA17037.1|2008678_2008825_-	exonuclease VIII	NA	NA	NA	NA	NA
VEA17039.1|2008866_2009412_+	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	75.9	9.3e-67
VEA17041.1|2009411_2011583_+	bacteriophage protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	44.2	2.5e-102
VEA17043.1|2011536_2012004_+	Uncharacterised protein	NA	A0A077KGW9	Edwardsiella_phage	42.2	7.3e-28
VEA17045.1|2012005_2012332_+	Protein of uncharacterised function (DUF2612)	NA	K4HYS2	Acinetobacter_phage	39.2	9.3e-14
VEA17047.1|2012366_2012600_+	Protein of uncharacterised function (DUF2612)	NA	H9C0Y0	Aeromonas_phage	44.8	6.0e-07
VEA17049.1|2012599_2014051_+|tail	side tail fiber protein	tail	E5G6P0	Salmonella_phage	70.2	7.3e-42
2013989:2014006	attL	GACGGTAATGCGGAAACC	NA	NA	NA	NA
VEA17051.1|2014821_2015544_-	type III secretion protein SopE	NA	NA	NA	NA	NA
VEA17053.1|2016023_2016305_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17055.1|2017769_2018039_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	54.0	4.3e-17
VEA17057.1|2018053_2018623_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	54.5	6.1e-45
VEA17059.1|2018651_2019239_-	RecE-like protein	NA	A0A0U2I1R6	Escherichia_phage	77.8	5.6e-17
VEA17061.1|2019371_2019602_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
VEA17063.1|2019877_2020132_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17065.1|2020287_2020395_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17067.1|2020444_2020612_-	lytic enzyme	NA	NA	NA	NA	NA
VEA17069.1|2020647_2020800_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17071.1|2020920_2021412_+|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	56.9	4.2e-42
VEA17073.1|2021398_2021578_+|terminase	phage terminase large subunit	terminase	NA	NA	NA	NA
VEA17075.1|2021964_2022318_+|tail	side tail fiber protein	tail	M1TAS6	Escherichia_phage	65.3	6.1e-27
VEA17077.1|2023138_2023318_+|tail	caudovirales tail fibre assembly protein	tail	A0A0M4QWS3	Salmonella_phage	89.2	4.0e-11
2023166:2023183	attR	GACGGTAATGCGGAAACC	NA	NA	NA	NA
VEA17079.1|2025576_2025699_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17081.1|2026147_2026546_-	inner membrane protein	NA	NA	NA	NA	NA
VEA17083.1|2026770_2026929_-	membrane protein	NA	NA	NA	NA	NA
VEA17085.1|2027061_2027976_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA	NA
VEA17087.1|2028925_2029225_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17089.1|2029550_2030231_+|transposase	transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	28.8	5.5e-16
VEA17091.1|2030406_2030553_+|transposase	transposase	transposase	NA	NA	NA	NA
VEA17093.1|2030787_2031105_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17095.1|2031835_2032255_+	acetyltransferase	NA	NA	NA	NA	NA
VEA17097.1|2032627_2033104_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17099.1|2033433_2033829_-	protein ycgX	NA	C6ZCX4	Enterobacteria_phage	33.6	8.3e-17
VEA17101.1|2034510_2035233_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
VEA17103.1|2035517_2035682_+	membrane protein	NA	NA	NA	NA	NA
VEA17104.1|2035904_2036555_+	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	6.5e-59
VEA17106.1|2036573_2036765_-	putative secreted protein	NA	NA	NA	NA	NA
VEA17108.1|2036875_2036998_-	conserved domain protein	NA	NA	NA	NA	NA
VEA17110.1|2037017_2037116_-	conserved domain protein	NA	NA	NA	NA	NA
VEA17112.1|2037230_2038772_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
VEA17114.1|2038747_2041381_-	mce-related protein	NA	NA	NA	NA	NA
VEA17116.1|2041349_2042633_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
VEA17118.1|2042689_2043259_+	GAF domain-containing protein	NA	NA	NA	NA	NA
VEA17120.1|2043356_2044043_+	ProP effector	NA	NA	NA	NA	NA
VEA17122.1|2044062_2046111_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
VEA17124.1|2046304_2047186_+	heat shock protein	NA	NA	NA	NA	NA
VEA17126.1|2047233_2048607_-	export protein	NA	NA	NA	NA	NA
VEA17128.1|2048671_2048779_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA17130.1|2048782_2049574_+	transcriptional regulator KdgR	NA	NA	NA	NA	NA
VEA17132.1|2049785_2050025_-	putative exported protein	NA	NA	NA	NA	NA
VEA17134.1|2050182_2050326_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA17136.1|2050396_2050684_+	putative exported protein	NA	NA	NA	NA	NA
VEA17138.1|2051917_2053663_+	penicillin-binding protein	NA	NA	NA	NA	NA
VEA17140.1|2053728_2054538_+	23S rRNA methyltransferase A	NA	NA	NA	NA	NA
VEA17142.1|2054534_2055101_-	membrane protein YebN	NA	NA	NA	NA	NA
VEA17144.1|2055510_2055969_-	membrane protein	NA	NA	NA	NA	NA
VEA17146.1|2056026_2056410_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
VEA17148.1|2056414_2056879_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
VEA17150.1|2056891_2057131_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA	NA
VEA17152.1|2057164_2057692_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA	NA
VEA17154.1|2057744_2058713_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
VEA17156.1|2059184_2059961_+	Magnesium and cobalt efflux protein CorC	NA	A0A0R6PEZ3	Moraxella_phage	44.4	4.7e-40
VEA17158.1|2060122_2060386_+	Magnesium and cobalt efflux protein CorC	NA	NA	NA	NA	NA
VEA17160.1|2060445_2060796_+	Magnesium and cobalt efflux protein CorC	NA	NA	NA	NA	NA
VEA17162.1|2060770_2062372_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA	NA
VEA17164.1|2062509_2062893_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
VEA17166.1|2062889_2063228_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
VEA17168.1|2063383_2063875_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
VEA17170.1|2064138_2064717_-	putative nudix hydrolase YeaB	NA	NA	NA	NA	NA
VEA17172.1|2064720_2066085_-	para-aminobenzoate synthase component I	NA	A0A0B5J984	Pandoravirus	34.8	9.5e-44
VEA17174.1|2066165_2066345_+	conserved domain protein	NA	NA	NA	NA	NA
VEA17176.1|2066350_2066695_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA	NA
VEA17178.1|2066984_2068739_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	31.7	1.6e-80
VEA17180.1|2068797_2069145_+|protease	metal-dependent protease-like protein, putative molecular chaperone	protease	NA	NA	NA	NA
VEA17182.1|2069144_2069495_+|protease	metal-dependent protease-like protein, putative molecular chaperone	protease	NA	NA	NA	NA
>prophage 13
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	2652537	2693127	4737887	holin,transposase,tail	Salmonella_phage(24.0%)	51	NA	NA
VEA18509.1|2652537_2652996_-|transposase	transposase for IS200	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
VEA18511.1|2653186_2653837_-	zinc/cadmium-binding protein	NA	NA	NA	NA	NA
VEA18513.1|2654030_2654357_-	Ferredoxin	NA	NA	NA	NA	NA
VEA18515.1|2654550_2655684_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA18517.1|2655765_2656356_-	peptide ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VEA18519.1|2656349_2656553_-	ABC transport ATP-binding protein	NA	NA	NA	NA	NA
VEA18521.1|2656533_2657148_-	ABC transport ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.8	7.6e-09
VEA18523.1|2657141_2657954_-	inner membrane transport protein	NA	NA	NA	NA	NA
VEA18525.1|2657943_2658147_-	ABC transporter	NA	NA	NA	NA	NA
VEA18527.1|2658146_2658917_-	ABC transporter	NA	NA	NA	NA	NA
VEA18529.1|2658916_2660551_-	ABC-type transporter, periplasmic subunit	NA	NA	NA	NA	NA
VEA18531.1|2661232_2661547_+	lipoprotein	NA	NA	NA	NA	NA
VEA18533.1|2661695_2662226_+	hydrogenase	NA	A0A0U2QLA7	Escherichia_phage	70.5	2.2e-36
VEA18535.1|2662308_2663352_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA18537.1|2664476_2664650_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA18539.1|2664781_2664907_-	lipoprotein	NA	NA	NA	NA	NA
VEA18541.1|2665284_2665548_+	Periplasmic lysozyme inhibitor of c-typelysozyme	NA	NA	NA	NA	NA
VEA18543.1|2666851_2667409_-	membrane protein	NA	Q9LA63	Enterobacterial_phage	33.0	1.0e-15
VEA18545.1|2668220_2668484_+	PhoP regulated protein	NA	NA	NA	NA	NA
VEA18547.1|2668700_2668892_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA18549.1|2669242_2669764_+	EnvE	NA	NA	NA	NA	NA
VEA18551.1|2669954_2670194_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	1.9e-32
VEA18553.1|2670683_2671190_+	EnvF	NA	NA	NA	NA	NA
VEA18555.1|2671320_2671497_+	EnvF	NA	NA	NA	NA	NA
VEA18557.1|2671818_2672046_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA18559.1|2672480_2673605_-	bacteriophage protein	NA	NA	NA	NA	NA
VEA18561.1|2674041_2674254_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.5e-20
VEA18563.1|2674506_2675178_+	Gifsy-2 prophage protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	1.8e-80
VEA18565.1|2675170_2676439_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	98.8	7.5e-245
VEA18567.1|2676441_2676861_-	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	59.1	1.9e-35
VEA18569.1|2678248_2679640_-|tail	Gifsy-2 prophage tail fiber protein	tail	E5G6P0	Salmonella_phage	53.4	5.3e-82
VEA18571.1|2680348_2680891_-|tail	Gifsy-2 prophage probable tail assembly protein	tail	K7PH50	Enterobacteria_phage	63.8	1.6e-47
VEA18573.1|2680950_2681688_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.2e-114
VEA18575.1|2681697_2682393_-|tail	tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.7e-89
VEA18577.1|2682482_2683016_+	superoxide dismutase	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
VEA18579.1|2683132_2683630_-	attachment/invasion protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
VEA18581.1|2683719_2684157_-|tail	tail protein	tail	A5LH39	Enterobacteria_phage	59.2	1.0e-28
VEA18583.1|2684639_2685113_+	GogA	NA	Q9MBM0	Phage_Gifsy-2	99.4	7.7e-86
VEA18585.1|2685119_2685257_-|holin	holin	holin	NA	NA	NA	NA
VEA18587.1|2685473_2685923_+	Gifsy-2 prophage protein	NA	NA	NA	NA	NA
VEA18589.1|2686296_2686821_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA18591.1|2686917_2687607_-	phage antitermination protein Q	NA	I6PDF8	Cronobacter_phage	54.9	2.1e-60
VEA18593.1|2687736_2687964_-	gifsy-1 prophage NinG	NA	A0A0M4RU10	Salmonella_phage	66.7	2.2e-14
VEA18595.1|2687978_2688341_+	exonuclease VIII	NA	NA	NA	NA	NA
VEA18597.1|2688333_2689164_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
VEA18599.1|2689199_2689520_+	Uncharacterised protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
VEA18601.1|2689512_2689845_+	bacteriophage protein	NA	S4TNP2	Salmonella_phage	80.3	3.0e-20
VEA18603.1|2689841_2690345_+	Eaa protein	NA	A0A075B8H2	Enterobacteria_phage	92.3	6.0e-36
VEA18608.1|2690394_2690631_+	excisionase	NA	NA	NA	NA	NA
VEA18610.1|2690740_2691763_+	Integrase	NA	O21929	Phage_21	79.4	2.2e-162
VEA18612.1|2691876_2693127_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	7.4e-19
>prophage 14
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	2923461	2933205	4737887	tRNA	Escherichia_phage(50.0%)	7	NA	NA
VEA19125.1|2923461_2924079_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
VEA19127.1|2924089_2925307_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.4	3.3e-104
VEA19128.1|2925245_2926535_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	52.4	2.2e-111
VEA19130.1|2926772_2928065_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.5	8.6e-95
VEA19132.1|2928323_2929667_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	40.9	1.6e-80
VEA19134.1|2929676_2930288_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEA19136.1|2930430_2933205_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.0e-88
>prophage 15
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	2946261	2952634	4737887	protease	Agrobacterium_phage(16.67%)	9	NA	NA
VEA19164.1|2946261_2947251_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	47.0	3.5e-80
VEA19166.1|2947340_2948540_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	40.0	1.6e-74
VEA19168.1|2948571_2948892_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
VEA19170.1|2949215_2949437_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
VEA19172.1|2949566_2949896_-	ABC transporter	NA	NA	NA	NA	NA
VEA19174.1|2949855_2950092_-	ABC transporter	NA	NA	NA	NA	NA
VEA19176.1|2950108_2950318_-	ABC transporter	NA	NA	NA	NA	NA
VEA19178.1|2950271_2951519_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	43.1	1.3e-39
VEA19180.1|2951515_2952634_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 16
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	3293391	3300461	4737887	transposase	Salmonella_phage(57.14%)	9	NA	NA
VEA20140.1|3293391_3293883_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	41.4	5.0e-27
VEA20143.1|3294098_3294953_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VEA20146.1|3295003_3295438_-	cation efflux system protein CusA	NA	NA	NA	NA	NA
VEA20148.1|3296488_3296851_+	translocase	NA	I1TED9	Salmonella_phage	99.2	1.1e-60
VEA20151.1|3296847_3297741_+	bactoprenol glucosyl transferase	NA	I1TED8	Salmonella_phage	97.6	5.4e-165
VEA20154.1|3297767_3299408_+	putative inner membrane protein	NA	B9UDL6	Salmonella_phage	37.9	8.7e-84
VEA20157.1|3299464_3299623_-	Uncharacterised protein	NA	A0A1W5PUZ7	Salmonella_phage	67.3	8.4e-13
VEA20160.1|3299794_3300013_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	76.7	2.3e-16
VEA20163.1|3300188_3300461_+|transposase	transposase	transposase	U5P429	Shigella_phage	86.8	2.8e-32
>prophage 17
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	3351862	3411118	4737887	tRNA,transposase,protease	Bacillus_phage(23.08%)	58	NA	NA
VEA20375.1|3351862_3352819_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
VEA20378.1|3352775_3353228_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
VEA20381.1|3353750_3353960_+	Lead cadmium zinc and mercury transporting ATPase	NA	NA	NA	NA	NA
VEA20384.1|3354290_3354866_+	Lead cadmium zinc and mercury transporting ATPase	NA	NA	NA	NA	NA
VEA20387.1|3355077_3356238_+	Lead cadmium zinc and mercury transporting ATPase	NA	E4ZFI9	Streptococcus_phage	39.9	3.0e-54
VEA20390.1|3356404_3357232_+	Secreted protein	NA	NA	NA	NA	NA
VEA20393.1|3358313_3358793_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
VEA20396.1|3358909_3360562_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
VEA20399.1|3360734_3361955_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
VEA20402.1|3361966_3362092_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA20405.1|3362169_3363534_+	transport protein	NA	NA	NA	NA	NA
VEA20408.1|3363499_3363847_+	transport protein	NA	NA	NA	NA	NA
VEA20411.1|3363969_3365319_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
VEA20415.1|3365426_3365600_+	acetyl esterase	NA	NA	NA	NA	NA
VEA20418.1|3365596_3366325_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.8	2.5e-14
VEA20421.1|3366392_3367355_-	ferrochelatase	NA	NA	NA	NA	NA
VEA20424.1|3367583_3368228_-	adenylate kinase	NA	NA	NA	NA	NA
VEA20427.1|3368527_3370402_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
VEA20430.1|3370525_3371119_-	recombination protein RecR	NA	NA	NA	NA	NA
VEA20432.1|3371275_3371449_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
VEA20435.1|3373536_3374088_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
VEA20438.1|3374240_3374618_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
VEA20441.1|3374698_3375214_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
VEA20445.1|3375227_3375395_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA20448.1|3375464_3376400_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	51.7	7.4e-64
VEA20451.1|3376441_3378595_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA20454.1|3378591_3379089_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA20457.1|3379085_3379802_-	integral membrane protein AefA	NA	NA	NA	NA	NA
VEA20460.1|3379920_3380574_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
VEA20463.1|3380715_3381909_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
VEA20466.1|3381931_3385081_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
VEA20469.1|3385576_3385951_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
VEA20472.1|3385978_3386197_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
VEA20475.1|3386374_3386926_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VEA20477.1|3387042_3387513_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA20480.1|3387568_3387709_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
VEA20483.1|3387714_3387975_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEA20486.1|3388199_3389750_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
VEA20489.1|3390058_3390370_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
VEA20492.1|3390402_3390972_-	lipoprotein	NA	NA	NA	NA	NA
VEA20495.1|3391186_3392047_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
VEA20498.1|3392146_3393433_-	ammonium transporter	NA	NA	NA	NA	NA
VEA20501.1|3393464_3393803_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
VEA20504.1|3394015_3394813_-	Multidrug resistance-like ATP-binding protein mdlB	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.6	1.7e-21
VEA20506.1|3394772_3395798_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	24.0	5.0e-13
VEA20509.1|3395790_3397563_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	6.1e-51
VEA20512.1|3397603_3398062_-	transcriptional regulator	NA	NA	NA	NA	NA
VEA20515.1|3398174_3399230_+	lyase	NA	NA	NA	NA	NA
VEA20518.1|3399279_3400098_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
VEA20521.1|3400198_3401899_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEA20524.1|3401935_3402658_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	9.7e-88
VEA20527.1|3402763_3403162_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
VEA20530.1|3403265_3403640_-	competence protein ComEA	NA	NA	NA	NA	NA
VEA20533.1|3403847_3405659_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
VEA20536.1|3405949_3406222_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
VEA20539.1|3406431_3408786_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
VEA20542.1|3408971_3410243_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
VEA20545.1|3410494_3411118_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 18
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	4737887	3544373	3589690	4737887	tail,capsid,coat,portal,transposase,integrase,terminase	Salmonella_phage(72.06%)	68	3545136:3545177	3585803:3585844
VEA20848.1|3544373_3544997_+|transposase	IS3 transposase	transposase	U5P429	Shigella_phage	49.2	1.9e-47
3545136:3545177	attL	GCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
VEA20850.1|3545465_3545828_+	translocase	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
VEA20852.1|3545824_3546757_+	bactoprenol glucosyl transferase	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
VEA20854.1|3546746_3548204_+	GtrC	NA	A8CG94	Salmonella_phage	100.0	1.3e-240
VEA20856.1|3548262_3550266_-|tail	bifunctional tail protein	tail	A0A220NR02	Salmonella_phage	100.0	0.0e+00
VEA20858.1|3550401_3550650_+	regulatory	NA	Q76H48	Enterobacteria_phage	100.0	1.8e-38
VEA20860.1|3551102_3553079_-	DNA transfer protein gp16	NA	Q76H13	Enterobacteria_phage	100.0	0.0e+00
VEA20862.1|3553078_3554263_-	DNA transfer protein	NA	A0A220NR03	Salmonella_phage	100.0	1.1e-216
VEA20864.1|3554259_3555111_-	DNA transfer protein gp7	NA	I1TEJ4	Salmonella_phage	96.8	3.2e-74
VEA20866.1|3555113_3555569_-|capsid	Phage capsid and scaffold protein	capsid	E7C9U3	Salmonella_phage	100.0	1.8e-87
VEA20868.1|3556214_3557633_-	DNA stabilization protein	NA	A0A220NQZ5	Salmonella_phage	100.0	4.9e-277
VEA20870.1|3557592_3558093_-	Gp4	NA	E7C9U0	Salmonella_phage	100.0	2.5e-90
VEA20872.1|3558076_3558637_-	prophage protein	NA	E7C9T9	Salmonella_phage	100.0	1.3e-103
VEA20874.1|3558677_3559121_-|coat	coat protein	coat	C6ZR10	Salmonella_phage	100.0	2.1e-77
VEA20876.1|3559113_3559971_-|coat	coat protein	coat	Q76H21	Enterobacteria_phage	100.0	2.3e-144
VEA20878.1|3559927_3560881_-	scaffolding protein	NA	A0A220NQZ9	Salmonella_phage	99.7	9.6e-160
VEA20880.1|3560894_3563072_-|portal	portal protein	portal	Q5C835	Enterobacteria_phage	100.0	0.0e+00
VEA20882.1|3563071_3564571_-|terminase	putative terminase large subunit	terminase	Q5C836	Enterobacteria_phage	100.0	1.7e-307
VEA20884.1|3564548_3565037_-|terminase	terminase small subunit	terminase	Q76H25	Enterobacteria_phage	100.0	1.0e-88
VEA20886.1|3565040_3565445_-	Uncharacterised protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
VEA20888.1|3565444_3565834_-	Uncharacterised protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
VEA20890.1|3565837_3566080_-	Uncharacterized 9.0 kDa protein in gp15-gp3 intergenic region ORF80	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
VEA20892.1|3566375_3566828_-	endopeptidase	NA	E7C9T0	Salmonella_phage	100.0	5.0e-74
VEA20893.1|3566824_3567223_-	Uncharacterised protein	NA	E7C9S9	Salmonella_phage	100.0	1.1e-69
VEA20895.1|3567209_3567527_-	putative bacteriophage protein	NA	E7C9S8	Salmonella_phage	100.0	1.1e-54
VEA20897.1|3567926_3568445_-	gp23-like protein	NA	A0A192Y911	Salmonella_phage	100.0	9.0e-96
VEA20899.1|3568441_3568621_-	protein Niprotein NZ	NA	E7C9S6	Salmonella_phage	100.0	9.2e-24
VEA20901.1|3568601_3568805_-	protein ninH	NA	A0A075B8J4	Enterobacteria_phage	100.0	7.2e-33
VEA20903.1|3568801_3569197_-	endodeoxyribonuclease RUS	NA	A0A220NQY4	Salmonella_phage	100.0	9.1e-72
VEA20905.1|3569193_3569484_-	putative bacteriophage protein	NA	A0A220NQY2	Salmonella_phage	100.0	1.7e-51
VEA20907.1|3569476_3569779_-	Uncharacterised protein	NA	A0A220NQY7	Salmonella_phage	100.0	3.8e-54
VEA20909.1|3569771_3569945_-	Protein ninF	NA	A0A220NQX7	Salmonella_phage	100.0	5.6e-26
VEA20911.1|3569937_3570279_-	protein ninX	NA	Q76H72	Enterobacteria_phage	100.0	2.1e-64
VEA20913.1|3570594_3571041_-	prophage protein	NA	A0A220NQX4	Salmonella_phage	100.0	8.3e-82
VEA20915.1|3570997_3571294_-	Uncharacterised protein	NA	A0A220NQY0	Salmonella_phage	100.0	2.8e-49
VEA20917.1|3571296_3571545_-	Uncharacterised protein	NA	A0A220NQX3	Salmonella_phage	100.0	5.2e-41
VEA20919.1|3571775_3572048_-	prophage protein	NA	A0A220NQX8	Salmonella_phage	100.0	4.2e-44
VEA20921.1|3572122_3573559_-	DNA replication	NA	A0A220NQX0	Salmonella_phage	100.0	7.2e-276
VEA20923.1|3573548_3574448_-	DNA replication	NA	A0A220NQX5	Salmonella_phage	100.0	2.1e-156
VEA20925.1|3574440_3574587_-	Protein of uncharacterised function (DUF2740)	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
VEA20927.1|3574621_3574903_-	regulatory protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
VEA20929.1|3575013_3575229_-	Uncharacterized HTH-type transcriptional regulator AF_2414	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
VEA20930.1|3575305_3576010_+	LexA repressor	NA	Q8HAG7	Salmonella_phage	100.0	6.7e-134
VEA20932.1|3576364_3576547_+	Uncharacterised protein	NA	A0A220NQW5	Salmonella_phage	100.0	3.3e-29
VEA20934.1|3576567_3576906_+	bacteriophage ST64T protein 24	NA	E7C9Q7	Salmonella_phage	100.0	1.1e-57
VEA20936.1|3576984_3577179_+	antirestriction protein	NA	E7C9Q6	Salmonella_phage	100.0	2.5e-30
VEA20938.1|3577262_3577802_+	pentapeptide repeat-containing protein	NA	E7C9Q5	Salmonella_phage	99.4	1.2e-53
VEA20940.1|3577973_3578288_+	superinfection exclusion protein	NA	E7C9Q4	Salmonella_phage	100.0	1.9e-56
VEA20942.1|3578372_3578519_+	regulatory protein	NA	E7C9Q3	Salmonella_phage	100.0	1.3e-20
VEA20944.1|3578511_3578625_+	Bacteriophage lambda Kil protein	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
VEA20946.1|3578818_3579526_+	recombinase	NA	E7C9Q0	Salmonella_phage	100.0	3.7e-140
VEA20948.1|3579525_3579810_+	anti-RecBCD	NA	E7C9P9	Salmonella_phage	100.0	2.3e-45
VEA20950.1|3579856_3580150_+	anti-RecBCD protein 2	NA	E7C9P8	Salmonella_phage	100.0	3.2e-50
VEA20952.1|3580160_3580331_+	prophage protein	NA	A0A220NQV6	Salmonella_phage	100.0	6.1e-25
VEA20954.1|3580327_3580705_+	Eae protein	NA	A0A220NQV7	Salmonella_phage	100.0	2.5e-63
VEA20956.1|3580701_3581223_+	conserved hypothetical bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	100.0	2.1e-92
VEA20958.1|3581225_3581456_+	Uncharacterised protein	NA	A0A220NQV0	Salmonella_phage	100.0	6.9e-40
VEA20960.1|3581490_3581766_+	Uncharacterised protein	NA	I6R982	Salmonella_phage	100.0	1.9e-52
VEA20962.1|3581753_3582017_+	phage protein	NA	A0A220NQU8	Salmonella_phage	100.0	3.7e-45
VEA20964.1|3582027_3582843_+	Eaa protein	NA	A0A220NQU1	Salmonella_phage	100.0	7.5e-137
VEA20966.1|3582839_3583385_+	Eaa protein	NA	A0A220NQT9	Salmonella_phage	100.0	9.5e-104
VEA20968.1|3583481_3583661_+	Eag protein	NA	A0A075B8F7	Enterobacteria_phage	100.0	1.9e-29
VEA20970.1|3583761_3584391_+	Phage EaC protein	NA	A0A220NQT7	Salmonella_phage	100.0	5.8e-121
VEA20972.1|3584393_3584744_+	HTH Phage	NA	A0A075B8K2	Enterobacteria_phage	100.0	6.4e-61
VEA20973.1|3584788_3585784_+|integrase	Phage integrase	integrase	A0A220NQU7	Salmonella_phage	100.0	1.9e-195
VEA20975.1|3585989_3587240_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	48.0	1.8e-97
3585803:3585844	attR	GCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
VEA20977.1|3587251_3588355_-	Glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
VEA20979.1|3588637_3589690_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	58.8	2.6e-113
