assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635485.1_29751_D01	LR134137	Salmonella bongori strain NCTC12419 genome assembly, chromosome: 1	1	923254-924321	1,1	CRISPRCasFinder,CRT	no	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	17,17	17	TypeI-E	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA|53aa|up_2|LR134137.1_920606_920765_-,NA	NA|453aa|up_9|LR134137.1_911423_912782_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|385aa|up_8|LR134137.1_912831_913986_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|LR134137.1_914043_915339_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|737aa|up_6|LR134137.1_915390_917601_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_5|LR134137.1_917743_918535_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|LR134137.1_918762_920400_+	PRK05380, pyrG, CTP synthetase; Validated	NA|62aa|up_3|LR134137.1_920482_920668_+	PRK00077, eno, enolase; Provisional	NA|53aa|up_2|LR134137.1_920606_920765_-	NA	NA|256aa|up_1|LR134137.1_920920_921688_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LR134137.1_922290_922962_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|286aa|down_0|LR134137.1_924412_925270_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LR134137.1_925276_925639_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|339aa|down_2|LR134137.1_925946_926963_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|259aa|down_3|LR134137.1_926970_927747_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|179aa|down_4|LR134137.1_927746_928283_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|74aa|down_5|LR134137.1_928230_928452_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|301aa|down_6|LR134137.1_928448_929351_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|168aa|down_7|LR134137.1_929296_929800_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|77aa|down_8|LR134137.1_930050_930281_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|264aa|down_9|LR134137.1_930361_931153_-	PRK15379, PRK15379, type III secretion system effector SopD
GCA_900635485.1_29751_D01	LR134137	Salmonella bongori strain NCTC12419 genome assembly, chromosome: 1	2	940328-941580	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	Type I-E	GTGTTCCCCGCGCCAGCGGGG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	21,29,29	1	1	940418-940449	LR134137.1_946427-946458	NA:I-E:I-E	19,20,20	20	TypeI-E	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	cas7|89aa|up_9|LR134137.1_936569_936836_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas7|89aa|up_8|LR134137.1_936816_937083_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas7|178aa|up_7|LR134137.1_937094_937628_+	cd09646, Cas7_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|249aa|up_6|LR134137.1_937638_938385_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|73aa|up_5|LR134137.1_938366_938585_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas6e|141aa|up_4|LR134137.1_938541_938964_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|55aa|up_3|LR134137.1_939015_939180_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas1|255aa|up_2|LR134137.1_939172_939937_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|69aa|up_1|LR134137.1_939936_940143_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas2|41aa|up_0|LR134137.1_940108_940231_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|101aa|down_0|LR134137.1_941804_942107_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|205aa|down_1|LR134137.1_942162_942777_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|258aa|down_2|LR134137.1_943031_943805_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|76aa|down_3|LR134137.1_943756_943984_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_4|LR134137.1_943949_945389_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|199aa|down_5|LR134137.1_945385_945982_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_6|LR134137.1_946032_946356_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_7|LR134137.1_946546_946858_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_8|LR134137.1_946876_947587_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|154aa|down_9|LR134137.1_947605_948067_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
