The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	4757282	1384874	1393794	4757282		Escherichia_phage(75.0%)	10	NA	NA
VDZ52382.1|1384874_1385444_+	putative acetyltransferase	NA	D0R097	Streptococcus_phage	29.1	2.6e-11
VDZ52384.1|1385580_1386816_+	aminotransferase	NA	NA	NA	NA	NA
VDZ52386.1|1386991_1387516_+	putative B-type cytochrome	NA	A0A0U2QLA7	Escherichia_phage	51.0	7.6e-26
VDZ52388.1|1388157_1388589_-	Antitoxin HicB	NA	Q7Y3V7	Yersinia_phage	49.3	6.7e-28
VDZ52390.1|1388685_1389249_-	putative iron-sulfur protein	NA	NA	NA	NA	NA
VDZ52392.1|1389245_1389860_-	TorD family cytoplasmic chaperone	NA	A0A077SLS7	Escherichia_phage	48.7	1.9e-44
VDZ52394.1|1389964_1390741_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SK59	Escherichia_phage	42.2	7.8e-43
VDZ52396.1|1390742_1391360_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	70.2	3.4e-89
VDZ52398.1|1391371_1392616_-	dimethyl sulfoxide reductase chain A protein	NA	A0A077SK27	Escherichia_phage	53.4	2.5e-131
VDZ52400.1|1392795_1393794_-	dimethyl sulfoxide reductase chain A protein	NA	A0A077SK27	Escherichia_phage	56.9	4.6e-96
>prophage 2
LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	4757282	2154075	2165405	4757282	tRNA	Anomala_cuprea_entomopoxvirus(16.67%)	10	NA	NA
VDZ54356.1|2154075_2155602_-	putative sugar transport system, ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.0	4.8e-12
VDZ54359.1|2155942_2156749_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
VDZ54362.1|2156892_2157606_+	putative inner membrane protein	NA	NA	NA	NA	NA
VDZ54366.1|2157717_2157930_-	Uncharacterised protein	NA	A0A0K1LMB5	Caulobacter_phage	43.5	3.4e-09
VDZ54369.1|2158382_2160311_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	36.8	9.7e-127
VDZ54372.1|2160515_2160866_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	31.0	6.5e-05
VDZ54375.1|2160961_2161159_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
VDZ54378.1|2161196_2161553_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
VDZ54381.1|2162020_2163004_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.0	3.8e-34
VDZ54384.1|2163017_2165405_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	25.8	4.3e-07
>prophage 3
LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	4757282	3308668	3394427	4757282	tRNA,protease,tail,integrase,portal	Enterobacteria_phage(22.73%)	96	3370882:3370901	3401150:3401169
VDZ57538.1|3308668_3310120_-|protease	metalloprotease	protease	NA	NA	NA	NA
VDZ57541.1|3310510_3311950_-|protease	metalloprotease	protease	NA	NA	NA	NA
VDZ57544.1|3312086_3312185_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57547.1|3312481_3312718_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57550.1|3313147_3313531_+	Transcriptional regulatory protein, C terminal	NA	NA	NA	NA	NA
VDZ57553.1|3313947_3314253_+	putative phage-like protein	NA	NA	NA	NA	NA
VDZ57556.1|3314254_3314644_+	peptidase M15 family	NA	A0A2I6PFM8	Proteus_phage	54.9	2.3e-35
VDZ57559.1|3314640_3314979_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57562.1|3315542_3315953_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57565.1|3316166_3317417_+	Insecticidal delta-endotoxin CryVIIIC(a)	NA	NA	NA	NA	NA
VDZ57568.1|3317490_3318771_+	putative lipase/acylhydrolase	NA	NA	NA	NA	NA
VDZ57571.1|3319077_3320082_-	adaptative response regulatory protein Ada	NA	NA	NA	NA	NA
VDZ57574.1|3320274_3321624_+	putative glycosyl hydrolase	NA	NA	NA	NA	NA
VDZ57577.1|3321713_3323135_+	Sodium:galactoside symporter family protein	NA	NA	NA	NA	NA
VDZ57580.1|3323131_3323392_+	PQ loop repeat	NA	NA	NA	NA	NA
VDZ57583.1|3323785_3325342_+	glycine radical enzyme, YjjI family	NA	NA	NA	NA	NA
VDZ57586.1|3325442_3326183_+	putative pyruvate formate-lyase 3 activating protein	NA	NA	NA	NA	NA
VDZ57590.1|3326258_3326354_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57593.1|3326809_3329098_-	copper exporting ATPase	NA	E4ZFI9	Streptococcus_phage	31.2	1.2e-59
VDZ57596.1|3329442_3330576_-	Acyltransferase family	NA	G9L6E5	Escherichia_phage	54.4	3.5e-108
VDZ57599.1|3330656_3331445_-	Uncharacterised protein	NA	G9L6E4	Escherichia_phage	68.1	4.1e-100
VDZ57602.1|3331783_3332047_-	Uncharacterised protein	NA	G9L6E4	Escherichia_phage	59.8	1.7e-21
VDZ57604.1|3332522_3332807_+	Integrase family protein	NA	B6SCW8	Bacteriophage	80.7	2.3e-37
VDZ57608.1|3333504_3334431_+	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase	NA	F1C5B0	Cronobacter_phage	83.9	1.8e-147
VDZ57611.1|3334420_3335893_+	Uncharacterised protein	NA	A8CG94	Salmonella_phage	28.3	3.7e-33
VDZ57614.1|3335915_3336248_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57618.1|3337065_3337377_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57621.1|3337516_3337762_+	DinI family protein	NA	K7PLW4	Enterobacteria_phage	46.2	2.9e-12
VDZ57624.1|3338033_3338165_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57627.1|3338253_3338727_+	Uncharacterised protein	NA	K7PLT9	Enterobacteria_phage	55.3	3.4e-49
VDZ57630.1|3338723_3339656_+	Uncharacterised protein	NA	K7PGT0	Enterobacteria_phage	57.8	1.7e-97
VDZ57633.1|3339695_3339905_-	Protein of uncharacterised function (DUF2767)	NA	NA	NA	NA	NA
VDZ57636.1|3340120_3341218_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57639.1|3341801_3342443_+	Galactoside O-acetyltransferase	NA	NA	NA	NA	NA
VDZ57642.1|3342493_3344410_-	Uncharacterised protein	NA	A0A291AXF7	Shigella_phage	43.4	9.3e-29
VDZ57645.1|3344452_3347533_-	Uncharacterised protein	NA	A0A286S259	Klebsiella_phage	54.8	0.0e+00
VDZ57647.1|3347529_3347910_-	Uncharacterised protein	NA	A0A286S2A6	Klebsiella_phage	82.5	1.1e-58
VDZ57650.1|3347920_3348403_-	Domain of uncharacterised function (DUF1833)	NA	A0A286S2B1	Klebsiella_phage	69.4	6.3e-59
VDZ57653.1|3348399_3348864_-	Uncharacterised protein	NA	A0A286S298	Klebsiella_phage	58.8	2.0e-49
VDZ57656.1|3348863_3352166_-|tail	Phage-related minor tail protein	tail	A0A0P0ZCJ4	Stx2-converting_phage	26.6	2.5e-58
VDZ57659.1|3352201_3352483_-	Uncharacterised protein	NA	K7P7L5	Enterobacteria_phage	53.8	4.1e-18
VDZ57662.1|3352482_3352902_-|tail	Phage tail assembly chaperone	tail	F1C576	Cronobacter_phage	57.0	6.7e-33
VDZ57665.1|3352917_3353325_-	Uncharacterised protein	NA	K7PJR9	Enterobacterial_phage	63.6	1.1e-32
VDZ57668.1|3353464_3353869_-|tail	Phage minor tail protein U	tail	K7PHM6	Enterobacterial_phage	61.4	2.6e-42
VDZ57671.1|3353865_3354420_-|tail	Prophage minor tail protein Z (GPZ)	tail	K7PMB7	Enterobacterial_phage	54.7	8.9e-49
VDZ57674.1|3354431_3354749_-	Uncharacterised protein	NA	K7PH55	Enterobacterial_phage	47.5	5.3e-14
VDZ57677.1|3354699_3355026_-	Uncharacterized conserved protein	NA	Q9EYD5	Enterobacteria_phage	63.6	4.3e-27
VDZ57680.1|3355108_3357124_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	K7PGT6	Enterobacteria_phage	74.5	2.0e-279
VDZ57683.1|3357092_3358574_-|portal	phage portal protein, lambda family	portal	A5LH29	Enterobacteria_phage	68.4	3.6e-198
VDZ57686.1|3358573_3358819_-	Uncharacterised protein	NA	K7PMB5	Enterobacterial_phage	71.4	3.8e-20
VDZ57689.1|3358785_3360888_-|tail	Bacteriophage tail assembly protein	tail	A5LH27	Enterobacteria_phage	74.5	3.1e-304
VDZ57692.1|3360887_3361427_-	Protein of uncharacterised function (DUF1441)	NA	A5LH26	Enterobacteria_phage	64.9	5.6e-56
VDZ57695.1|3361803_3362049_-	Protein of uncharacterised function (DUF2560)	NA	A0A286N2R1	Klebsiella_phage	54.1	1.5e-11
VDZ57698.1|3362194_3362437_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57700.1|3362823_3362946_-	Uncharacterised protein	NA	A0A076G6Z2	Escherichia_phage	70.3	3.1e-07
VDZ57704.1|3362938_3363139_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57707.1|3363163_3363685_-	Protein of uncharacterised function (DUF2514)	NA	Q7Y3V2	Yersinia_phage	83.8	9.2e-72
VDZ57710.1|3363681_3364074_-	peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin	NA	E7C9S9	Salmonella_phage	60.8	5.5e-37
VDZ57713.1|3364066_3364360_-	Protein of uncharacterised function (DUF754)	NA	A4PE35	Ralstonia_virus	35.2	1.5e-07
VDZ57716.1|3364346_3364721_-	Uncharacterised protein	NA	A0A1S5NRL1	Burkholderia_phage	40.8	5.7e-07
VDZ57719.1|3364928_3365048_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57722.1|3365293_3365563_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57725.1|3365853_3366186_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57728.1|3366286_3366664_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ57731.1|3366782_3366881_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57735.1|3366861_3367080_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57738.1|3367543_3368320_+	Methylisocitrate lyase	NA	NA	NA	NA	NA
VDZ57741.1|3368303_3369350_+	bifunctional regulatory protein/DNA repair protein	NA	A0A167R6J9	Powai_lake_megavirus	53.7	5.3e-18
VDZ57747.1|3369499_3369925_-	phage antitermination protein Q	NA	S5M7R9	Escherichia_phage	57.1	5.6e-35
VDZ57749.1|3370186_3371179_-	Uncharacterised protein	NA	A0A1B5FPA6	Escherichia_phage	50.2	9.0e-68
3370882:3370901	attL	CAGGCACACCGGTATTGATA	NA	NA	NA	NA
VDZ57751.1|3371287_3373963_-	Zinc-binding domain of primase-helicase family	NA	A0A1W6JPG0	Morganella_phage	48.5	9.1e-232
VDZ57755.1|3373959_3374355_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57758.1|3374468_3374672_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57761.1|3374674_3374845_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57765.1|3374822_3375020_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57768.1|3375012_3375807_-	Phage anti-repressor protein	NA	F1C5A3	Cronobacter_phage	45.1	3.2e-44
VDZ57772.1|3375808_3376156_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57775.1|3376148_3376607_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57779.1|3376599_3377694_-	phage immunity repressor protein	NA	NA	NA	NA	NA
VDZ57782.1|3377690_3378203_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ57785.1|3378311_3378509_-	Regulatory protein	NA	A0A1V0E8E5	Vibrio_phage	45.3	3.0e-07
VDZ57788.1|3379645_3380833_-|integrase	integrase family protein	integrase	Q7M297	Enterobacteria_phage	57.0	2.3e-131
VDZ57791.1|3381288_3382155_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	34.6	9.0e-32
VDZ57794.1|3382169_3382382_+	putative RNA-binding protein	NA	NA	NA	NA	NA
VDZ57797.1|3382531_3383917_-|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	26.8	2.5e-39
VDZ57800.1|3384187_3384682_+	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA	NA
VDZ57803.1|3384692_3385415_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
VDZ57806.1|3385590_3386130_+	phosphoribosylaminoimidazole carboxylase catalytic subunit PurE	NA	NA	NA	NA	NA
VDZ57809.1|3386126_3387191_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
VDZ57812.1|3387259_3389692_-	permease	NA	NA	NA	NA	NA
VDZ57816.1|3389688_3390375_-	putative ABC transporter ATP-binding protein YbbA	NA	NA	NA	NA	NA
VDZ57819.1|3390408_3390981_+	arylesterase	NA	NA	NA	NA	NA
VDZ57822.1|3391154_3391931_+	short chain dehydrogenase	NA	NA	NA	NA	NA
VDZ57825.1|3392011_3392866_+	putative thioredoxin	NA	NA	NA	NA	NA
VDZ57828.1|3393060_3393975_+|protease	putative stomatin/prohibitin-family membrane protease subunit YbbK	protease	NA	NA	NA	NA
VDZ57830.1|3393977_3394427_+|protease	putative activity regulator of membrane protease YbbK	protease	NA	NA	NA	NA
3401150:3401169	attR	CAGGCACACCGGTATTGATA	NA	NA	NA	NA
>prophage 4
LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	4757282	3751343	3759375	4757282	integrase	uncultured_Mediterranean_phage(33.33%)	6	3746829:3746841	3752642:3752654
3746829:3746841	attL	CCATAAAATGGAT	NA	NA	NA	NA
VDZ58813.1|3751343_3752636_-|integrase	phage integrase family site specific recombinase	integrase	I6R9B6	Salmonella_phage	25.4	3.1e-20
VDZ58817.1|3752869_3755431_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	24.4	1.3e-25
3752642:3752654	attR	ATCCATTTTATGG	NA	NA	NA	NA
VDZ58821.1|3755537_3756536_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.3	3.6e-32
VDZ58825.1|3756590_3757556_-	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	32.8	1.3e-07
VDZ58830.1|3757973_3758600_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	3.1e-34
VDZ58834.1|3758622_3759375_-	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	50.8	1.6e-64
