The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	1226511	1330663	4960737	tail,protease,integrase,terminase,plate,capsid,portal,tRNA	Enterobacteria_phage(46.43%)	116	1281324:1281339	1319651:1319666
VDZ56121.1|1226511_1227135_+|protease	ATP-dependent clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
VDZ56124.1|1227261_1228536_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.4	1.9e-131
VDZ56127.1|1228720_1231075_+|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	52.6	5.5e-225
VDZ56130.1|1231283_1231556_+	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.5e-20
VDZ56133.1|1231824_1233699_+	peptidyl-prolyl cis-trans isomerase (rotamase D)	NA	NA	NA	NA	NA
VDZ56136.1|1233845_1234220_+	DNA uptake protein	NA	NA	NA	NA	NA
VDZ56139.1|1234322_1234721_+	acyl-CoA thioester hydrolase	NA	NA	NA	NA	NA
VDZ56142.1|1234838_1235534_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	6.5e-89
VDZ56144.1|1235599_1237300_-	substrate-binding protein	NA	NA	NA	NA	NA
VDZ56147.1|1237400_1238219_+	hydrolase	NA	NA	NA	NA	NA
VDZ56150.1|1238269_1239325_-	lyase	NA	NA	NA	NA	NA
VDZ56154.1|1239441_1239900_+	transcriptional regulator	NA	NA	NA	NA	NA
VDZ56160.1|1239944_1241717_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	29.7	3.1e-47
VDZ56163.1|1241709_1243488_+	putative multidrug transporter membrane\ATP-binding components	NA	W8CYL7	Bacillus_phage	28.1	1.2e-41
VDZ56167.1|1243744_1244083_+	nitrogen regulatory protein P-II 2	NA	NA	NA	NA	NA
VDZ56170.1|1244114_1245401_+	ammonium transporter	NA	NA	NA	NA	NA
VDZ56173.1|1245451_1246312_-	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
VDZ56176.1|1246524_1247094_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56179.1|1247125_1247437_-	methyltransferase	NA	NA	NA	NA	NA
VDZ56182.1|1247895_1248147_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56185.1|1248143_1248362_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56189.1|1248431_1249850_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VDZ56192.1|1249937_1250567_+	Uncharacterized BCR, YitT family COG1284	NA	NA	NA	NA	NA
VDZ56195.1|1250631_1250985_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VDZ56198.1|1251036_1251693_-	signal transduction protein	NA	NA	NA	NA	NA
VDZ56201.1|1251631_1252591_-	signal transduction protein	NA	NA	NA	NA	NA
VDZ56205.1|1252779_1253040_+	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
VDZ56208.1|1253041_1253182_+	50S ribosomal protein L36 2	NA	NA	NA	NA	NA
VDZ56211.1|1253260_1253731_-	Inner membrane protein ylaC	NA	NA	NA	NA	NA
VDZ56214.1|1253847_1254399_-	maltose O-acetyltransferase	NA	NA	NA	NA	NA
VDZ56217.1|1254580_1254799_-	hemolysin expression-modulating protein	NA	NA	NA	NA	NA
VDZ56220.1|1254826_1255201_-	Toxin overexpression modulator in biofilms	NA	NA	NA	NA	NA
VDZ56223.1|1255689_1258839_-	acriflavin resistance protein B	NA	S5VTK5	Leptospira_phage	23.7	9.5e-55
VDZ56226.1|1258861_1260055_-	acriflavin resistance protein A	NA	NA	NA	NA	NA
VDZ56229.1|1260196_1260847_+	acrAB operon repressor	NA	NA	NA	NA	NA
VDZ56231.1|1260979_1264339_+	potassium efflux protein KefA	NA	NA	NA	NA	NA
VDZ56234.1|1264414_1264576_-	Protein of uncharacterised function (DUF2496)	NA	NA	NA	NA	NA
VDZ56237.1|1264590_1265118_-	primosomal replication protein N''	NA	NA	NA	NA	NA
VDZ56240.1|1265169_1265565_+	Inner membrane protein ybaN	NA	NA	NA	NA	NA
VDZ56244.1|1265758_1266310_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.6	7.0e-30
VDZ56247.1|1268509_1268839_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
VDZ56251.1|1268838_1269444_+	recombination protein RecR	NA	NA	NA	NA	NA
VDZ56254.1|1269554_1271429_+	heat shock protein 90	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.4	2.0e-113
VDZ56257.1|1271661_1272306_+	adenylate kinase	NA	NA	NA	NA	NA
VDZ56260.1|1272469_1273432_+	ferrochelatase	NA	NA	NA	NA	NA
VDZ56263.1|1273428_1274388_-	acetyl esterase	NA	A0A167RJ59	Powai_lake_megavirus	29.0	2.5e-14
VDZ56266.1|1274540_1275845_+	inosine-guanosine kinase	NA	NA	NA	NA	NA
VDZ56268.1|1275936_1277616_-	putative cation:proton antiport protein	NA	NA	NA	NA	NA
VDZ56271.1|1277841_1279062_-	fosmidomycin resistance protein	NA	NA	NA	NA	NA
VDZ56274.1|1279236_1280889_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA	NA
VDZ56277.1|1280996_1281476_-|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK	tRNA	NA	NA	NA	NA
1281324:1281339	attL	GGCAACCAGCAGCGTT	NA	NA	NA	NA
VDZ56280.1|1281678_1282473_-	TraB family	NA	NA	NA	NA	NA
VDZ56283.1|1282573_1285075_-	copper exporting ATPase	NA	A0A218MNH6	uncultured_virus	38.3	2.0e-116
VDZ56286.1|1285358_1286033_+	Uncharacterised protein	NA	A0A218M4H5	Erwinia_phage	42.3	1.4e-35
VDZ56289.1|1286069_1286321_-	prophage late promoter activator protein	NA	NA	NA	NA	NA
VDZ56292.1|1286366_1286687_-|tail	phage tail protein	tail	A0A0A7NQ97	Enterobacteria_phage	89.2	2.6e-45
VDZ56297.1|1286888_1287497_-|tail	phage tail protein	tail	A0A0A7NQ97	Enterobacteria_phage	73.6	2.0e-70
VDZ56299.1|1287649_1288837_+|tail	phage tail sheath protein	tail	A0A0A7NV69	Enterobacteria_phage	81.8	1.1e-186
VDZ56302.1|1288838_1288970_+|tail	phage tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	62.5	1.5e-07
VDZ56305.1|1288966_1289359_+|tail	phage tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	64.0	2.4e-40
VDZ56308.1|1289490_1289736_+|tail	phage tail protein	tail	A0A0A7NPZ0	Enterobacteria_phage	55.0	1.0e-12
VDZ56311.1|1289738_1289897_+|tail	phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	65.3	7.1e-12
VDZ56314.1|1289883_1290807_+|tail	phage tail tape measure protein	tail	B9A7B3	Serratia_phage	55.9	7.1e-59
VDZ56317.1|1290782_1292240_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	51.2	4.9e-115
VDZ56320.1|1292315_1292861_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	54.5	1.1e-38
VDZ56323.1|1292877_1293366_+|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	79.5	2.1e-70
VDZ56326.1|1293560_1293989_-|tail	phage tail fiber assembly protein	tail	A0A0M4S6V4	Salmonella_phage	77.6	2.8e-26
VDZ56329.1|1293991_1294657_-	Uncharacterised protein	NA	D6PGT3	uncultured_phage	55.1	5.5e-05
VDZ56332.1|1294679_1295453_-|tail	phage tail fiber protein	tail	A0A0M3ULH6	Salmonella_phage	85.7	9.9e-115
VDZ56335.1|1295442_1296060_-|tail	phage tail protein	tail	A0A1J0I2I4	Salmonella_phage	61.7	3.1e-66
VDZ56338.1|1296052_1296949_-|plate	phage baseplate assembly protein J	plate	A0A0A7NPY5	Enterobacteria_phage	66.8	2.1e-100
VDZ56340.1|1296935_1297304_-|plate	phage baseplate assembly protein W	plate	A0A0A7NQ90	Enterobacteria_phage	68.1	3.6e-38
VDZ56343.1|1297300_1297882_-|tail	phage tail spike protein	tail	A0A0A7NRZ3	Enterobacteria_phage	70.7	3.9e-71
VDZ56345.1|1297878_1298517_-|tail	phage tail completion protein S	tail	A0A0A7NV60	Enterobacteria_phage	58.1	3.2e-66
VDZ56348.1|1298513_1298978_-|tail	phage tail completion protein R	tail	A0A0A7NPU6	Enterobacteria_phage	68.7	1.9e-60
VDZ56351.1|1299188_1299626_-	prophage lipoprotein	NA	A0A0A7NPY2	Enterobacteria_phage	31.9	9.6e-06
VDZ56354.1|1299622_1300183_-	Phage-related lysozyme (muraminidase)	NA	A0A1S5Q8G1	Aeromonas_phage	40.8	4.6e-29
VDZ56357.1|1300151_1300454_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56360.1|1300444_1300645_-|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	71.2	1.1e-20
VDZ56363.1|1300644_1301172_-|capsid	capsid completion protein	capsid	A0A0A7NPU2	Enterobacteria_phage	61.7	9.6e-53
VDZ56366.1|1301278_1302097_-|terminase	small terminase subunit	terminase	A0A0A7NPX9	Enterobacteria_phage	63.5	1.6e-86
VDZ56369.1|1302148_1303222_-|capsid	major capsid protein	capsid	A0A0A7NQ82	Enterobacteria_phage	70.0	3.6e-139
VDZ56373.1|1303244_1304081_-|capsid	capsid scaffolding protein	capsid	A0A0A7NRY7	Enterobacteria_phage	64.7	1.3e-96
VDZ56376.1|1304238_1304475_+|terminase	large terminase subunit	terminase	A0A0A7NV54	Enterobacteria_phage	83.6	1.3e-30
VDZ56379.1|1304504_1305326_+|terminase	large terminase subunit	terminase	A0A0A7NV54	Enterobacteria_phage	74.4	8.1e-115
VDZ56382.1|1305415_1305862_+|terminase	large terminase subunit	terminase	A0A0A7NV54	Enterobacteria_phage	78.4	2.3e-63
VDZ56385.1|1306230_1307022_+|capsid,portal	capsid portal protein	capsid,portal	A0A0A7NPT9	Enterobacteria_phage	79.8	4.3e-121
VDZ56388.1|1307663_1308161_+	prophage membrane protein	NA	NA	NA	NA	NA
VDZ56392.1|1308201_1308882_-	Site-specific DNA methylase	NA	A0A0M4S5U3	Salmonella_phage	79.6	2.2e-102
VDZ56395.1|1308984_1309506_-	Uncharacterised protein	NA	A0A2C9CX56	Yersinia_phage	76.2	2.5e-29
VDZ56398.1|1309508_1312148_-	phage DNA replication protein	NA	A0A0M4RTM8	Salmonella_phage	51.9	2.2e-193
VDZ56401.1|1312140_1313148_-	Modification methylase HhaI	NA	Q6J1P4	Burkholderia_virus	55.8	9.0e-100
VDZ56404.1|1313158_1313332_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56406.1|1313328_1313535_-	Uncharacterised protein	NA	A0A2R2Z313	Escherichia_phage	77.4	1.4e-20
VDZ56409.1|1313534_1314500_-	DNA adenine methylase	NA	A0A0M4QWR0	Salmonella_phage	52.3	2.7e-85
VDZ56412.1|1314510_1315062_-	prophage exonuclease	NA	A0A192Y6E0	Salmonella_phage	28.8	1.4e-14
VDZ56415.1|1315058_1315283_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56418.1|1315350_1315623_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56421.1|1315641_1315869_-	Uncharacterised protein	NA	A0A0M4S6M9	Salmonella_phage	69.3	2.8e-25
VDZ56424.1|1315881_1316061_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56427.1|1316073_1316301_-	Uncharacterised protein	NA	A0A0M5M1I3	Salmonella_phage	49.2	6.9e-08
VDZ56430.1|1316345_1316807_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56433.1|1316930_1317230_+	phage repressor protein	NA	Q1JS29	Enterobacteria_phage	56.6	1.1e-26
VDZ56436.1|1317299_1318322_+|integrase	phage integrase	integrase	Q83VS6	Escherichia_phage	52.0	2.4e-92
VDZ56439.1|1318475_1319246_-	hemin importer ATP-binding subunit	NA	W5SAS9	Pithovirus	27.9	1.2e-14
VDZ56442.1|1319242_1320235_-	vitamin B12 ABC transporter permease	NA	NA	NA	NA	NA
1319651:1319666	attR	GGCAACCAGCAGCGTT	NA	NA	NA	NA
VDZ56447.1|1320286_1320910_-	Putative NADH-flavin reductase	NA	NA	NA	NA	NA
VDZ56450.1|1320909_1321404_-	Putative heme iron utilization protein	NA	NA	NA	NA	NA
VDZ56456.1|1321416_1322754_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
VDZ56459.1|1322772_1323597_-	vitamin B12-transporter protein BtuF	NA	NA	NA	NA	NA
VDZ56462.1|1323599_1325744_-	bifunctional enterobactin receptor/adhesin protein	NA	NA	NA	NA	NA
VDZ56465.1|1326033_1326444_+	DNA-binding transcriptional regulator CueR	NA	NA	NA	NA	NA
VDZ56468.1|1326440_1327157_-	Protein of uncharacterised function (DUF3142)	NA	NA	NA	NA	NA
VDZ56471.1|1327126_1329271_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ56474.1|1329290_1329749_-	Inner membrane protein ybbJ	NA	NA	NA	NA	NA
VDZ56477.1|1329745_1330663_-|protease	FtsH protease regulator HflK	protease	NA	NA	NA	NA
>prophage 2
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	1740516	1751273	4960737	tRNA	Escherichia_phage(50.0%)	7	NA	NA
VDZ57635.1|1740516_1744503_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	49.2	2.8e-88
VDZ57638.1|1744614_1745226_+	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VDZ57641.1|1745236_1746580_+	ATPase	NA	G3MBE0	Bacillus_virus	40.8	4.3e-81
VDZ57644.1|1746672_1747965_+|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.1	2.5e-94
VDZ57649.1|1748201_1748957_+	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	50.6	1.2e-53
VDZ57652.1|1748998_1750645_+	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	50.8	7.7e-157
VDZ57655.1|1750655_1751273_+	anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
>prophage 3
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	1959710	2001473	4960737	transposase,tRNA,integrase	Shigella_phage(50.0%)	47	1968514:1968573	1995910:1995991
VDZ58301.1|1959710_1960043_-|transposase	ISEc14 transposase B	transposase	U5P429	Shigella_phage	61.3	5.0e-31
VDZ58304.1|1959993_1960305_-|transposase	ISEc14 transposase B	transposase	U5P429	Shigella_phage	59.2	1.1e-19
VDZ58307.1|1960295_1960520_-|transposase	ISEc14 transposase B	transposase	NA	NA	NA	NA
VDZ58310.1|1960561_1960846_-|transposase	ISEc14 transposase A	transposase	NA	NA	NA	NA
VDZ58313.1|1960897_1963336_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58316.1|1963477_1965145_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58319.1|1965132_1966041_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58323.1|1966151_1967237_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58326.1|1967850_1968108_+	stable plasmid inheritance protein	NA	NA	NA	NA	NA
VDZ58330.1|1968108_1968441_+	post-segregation toxin PemK	NA	NA	NA	NA	NA
1968514:1968573	attL	TGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCG	NA	NA	NA	NA
VDZ58333.1|1968915_1969833_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA	NA
VDZ58336.1|1969934_1970885_+	transcriptional regulator Cbl	NA	NA	NA	NA	NA
VDZ58339.1|1971355_1971712_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58342.1|1972349_1973495_-	arylsulfatase	NA	NA	NA	NA	NA
VDZ58345.1|1973593_1973779_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58348.1|1973723_1974245_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA	NA
VDZ58352.1|1974192_1975209_-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein	NA	NA	NA	NA	NA
VDZ58355.1|1975324_1976113_-	nucleoside-specific channel-forming protein	NA	NA	NA	NA	NA
VDZ58358.1|1976183_1976489_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	A0A0B5J7T1	Pandoravirus	43.4	1.9e-05
VDZ58361.1|1976451_1977747_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA	NA
VDZ58364.1|1977931_1979488_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA	NA
VDZ58367.1|1979827_1980568_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58370.1|1981270_1981444_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58373.1|1981534_1981720_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58377.1|1981782_1982427_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58380.1|1982398_1982770_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58383.1|1983029_1983725_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58386.1|1983914_1984319_-	MTH538 TIR-like domain (DUF1863)	NA	NA	NA	NA	NA
VDZ58389.1|1984341_1984809_-	MTH538 TIR-like domain (DUF1863)	NA	NA	NA	NA	NA
VDZ58392.1|1985018_1985402_-	queuosine biosynthesis protein QueC	NA	NA	NA	NA	NA
VDZ58395.1|1985403_1986096_-	Probable N-glycosylase/DNA lyase	NA	NA	NA	NA	NA
VDZ58398.1|1987536_1988706_-|tRNA	7-cyano-7-deazaguanine tRNA-ribosyltransferase	tRNA	NA	NA	NA	NA
VDZ58401.1|1988748_1989921_-	ribokinase	NA	NA	NA	NA	NA
VDZ58404.1|1990429_1990897_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58407.1|1990893_1991115_+	DNA-binding transcriptional regulator Nlp	NA	A0A2I7S995	Vibrio_phage	67.2	4.2e-18
VDZ58410.1|1991612_1991966_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ58413.1|1991970_1992273_+	Antitoxin HigA	NA	NA	NA	NA	NA
VDZ58416.1|1992795_1993104_+	DNA binding protein	NA	NA	NA	NA	NA
VDZ58419.1|1993298_1993664_+	DNA binding protein	NA	NA	NA	NA	NA
VDZ58422.1|1994485_1995748_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	37.6	8.4e-71
VDZ58425.1|1996177_1997632_+	multidrug efflux protein	NA	NA	NA	NA	NA
1995910:1995991	attR	TGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTACAGAGGAATCGTT	NA	NA	NA	NA
VDZ58428.1|1997850_1999020_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VDZ58431.1|1999037_1999346_-	putative phosphatase	NA	NA	NA	NA	NA
VDZ58434.1|1999314_1999758_-	putative phosphatase	NA	NA	NA	NA	NA
VDZ58437.1|1999750_2000476_-	hydrogenase maturation protein	NA	NA	NA	NA	NA
VDZ58440.1|2000435_2000807_-	hydrogenase maturation protein	NA	NA	NA	NA	NA
VDZ58443.1|2000819_2001473_-|transposase	ISEc14 transposase B	transposase	Q716C2	Shigella_phage	91.7	7.8e-121
>prophage 4
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	2051673	2063883	4960737	transposase	Phage_21(27.27%)	17	NA	NA
VDZ58629.1|2051673_2053023_-	Site-specific recombinase XerD	NA	Q77Z04	Phage_21	60.7	5.6e-121
VDZ58633.1|2054853_2055402_+|transposase	IS3 family transposase B	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.0	3.2e-06
VDZ58636.1|2055388_2055760_+	Uncharacterised protein	NA	K7PM99	Enterobacterial_phage	75.0	3.1e-05
VDZ58640.1|2056635_2057238_-	Acyltransferase family	NA	NA	NA	NA	NA
VDZ58642.1|2057654_2057897_-	damage-inducible protein	NA	Q6UAW0	Klebsiella_phage	80.5	1.8e-30
VDZ58646.1|2057971_2058214_+	Uncharacterised protein	NA	I6PD82	Cronobacter_phage	53.2	4.2e-19
VDZ58650.1|2058216_2058606_+	DNA polymerase V subunit UmuD	NA	Q1MVE7	Enterobacteria_phage	71.3	5.6e-50
VDZ58654.1|2058935_2059337_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58658.1|2059804_2060182_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58662.1|2060245_2060476_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58666.1|2060510_2060666_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58669.1|2060870_2061083_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	96.3	2.4e-23
VDZ58672.1|2061501_2061729_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ58676.1|2061903_2062146_-	damage-inducible protein	NA	Q6UAW0	Klebsiella_phage	77.9	1.5e-29
VDZ58680.1|2062224_2062446_+	DNA polymerase V subunit UmuD	NA	A0A222YZE2	Escherichia_phage	83.1	3.7e-22
VDZ58684.1|2062669_2062882_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	3.5e-22
VDZ58688.1|2063388_2063883_+	outer membrane protein X	NA	A0A1B0VBR9	Salmonella_phage	34.9	1.8e-08
>prophage 5
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	2154547	2172097	4960737	transposase,tRNA	Shigella_phage(15.38%)	18	NA	NA
VDZ59102.1|2154547_2154901_+|transposase	ISEc14 transposase A	transposase	U5P4I9	Shigella_phage	92.5	1.1e-20
VDZ59106.1|2155282_2155831_-|transposase	IS3 family transposase B	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.0	3.2e-06
VDZ59111.1|2156518_2156749_+|transposase	ISEc14 transposase B	transposase	U5P429	Shigella_phage	93.4	2.0e-34
VDZ59117.1|2157002_2158022_-	prophage membrane protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	27.0	5.9e-14
VDZ59121.1|2158509_2160438_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	36.8	4.4e-127
VDZ59126.1|2160540_2160984_+	translation initiation factor if-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.6	1.6e-13
VDZ59130.1|2161080_2161278_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
VDZ59134.1|2161333_2161690_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
VDZ59138.1|2162059_2163043_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.4e-33
VDZ59142.1|2163058_2165446_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
VDZ59146.1|2165450_2165750_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
VDZ59152.1|2165903_2166884_+	vtamin B12-transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	24.8	6.7e-15
VDZ59155.1|2166944_2167496_+	vitamin B12 transport periplasmic protein (glutathione peroxidase)	NA	NA	NA	NA	NA
VDZ59160.1|2167495_2168245_+	vitamin B12-transporter ATPase	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	7.1e-09
VDZ59165.1|2168322_2168787_+	lipoprotein	NA	A0A1V0DZX6	Clostridioides_phage	38.2	3.5e-14
VDZ59169.1|2169103_2169817_+	Cyclic di-GMP regulator CdgR	NA	NA	NA	NA	NA
VDZ59173.1|2169878_2171321_+	Uncharacterized conserved protein	NA	A0A075BSJ0	Microcystis_phage	35.0	8.5e-51
VDZ59177.1|2171317_2172097_-	hemin importer ATP-binding subunit	NA	A0A285PWH2	Cedratvirus	26.7	7.9e-11
>prophage 6
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	2361244	2369842	4960737		Escherichia_phage(71.43%)	12	NA	NA
VDZ59789.1|2361244_2361859_-	twin-argninine leader-binding protein DmsD	NA	A0A077SLS7	Escherichia_phage	36.0	4.0e-26
VDZ59792.1|2361901_2362756_-	anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA	NA
VDZ59795.1|2362757_2363126_-	anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	59.3	1.1e-39
VDZ59798.1|2363231_2363375_-	anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	63.6	1.3e-12
VDZ59802.1|2363385_2364879_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	48.3	7.0e-133
VDZ59804.1|2364841_2365825_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	48.9	2.9e-74
VDZ59807.1|2365973_2366279_-	Protein of uncharacterised function (DUF1161)	NA	NA	NA	NA	NA
VDZ59810.1|2366348_2367095_+	lipoprotein	NA	NA	NA	NA	NA
VDZ59813.1|2367102_2367663_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VDZ59816.1|2367698_2368040_-	Protein of uncharacterised function (DUF1283)	NA	NA	NA	NA	NA
VDZ59819.1|2368193_2368520_+	Uncharacterised BCR, YnfA/UPF0060 family	NA	A0A218MNG8	uncultured_virus	54.9	2.2e-23
VDZ59822.1|2368627_2369842_+	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	29.9	1.9e-48
>prophage 7
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	2545946	2552600	4960737	transposase	Shigella_phage(44.44%)	9	NA	NA
VDZ60337.1|2545946_2547065_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	78.2	1.2e-172
VDZ60340.1|2547279_2547429_+|transposase	ISEc14 transposase A	transposase	U5P4I9	Shigella_phage	93.5	2.0e-16
VDZ60343.1|2548038_2548419_+|transposase	ISEc14 transposase B	transposase	U5P429	Shigella_phage	88.1	8.5e-59
VDZ60346.1|2548544_2549807_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	70.1	2.1e-170
VDZ60350.1|2549809_2550049_-	DNA polymerase V subunit UmuD	NA	I6S1S3	Salmonella_phage	60.5	1.6e-15
VDZ60353.1|2550156_2550573_-|transposase	IS3 transposase B	transposase	Q716C2	Shigella_phage	88.3	6.2e-71
VDZ60357.1|2551023_2551326_-|transposase	ISEc14 transposase A	transposase	Q716C1	Shigella_phage	92.0	9.7e-42
VDZ60360.1|2551477_2551897_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	58.5	3.9e-33
VDZ60364.1|2552069_2552600_-	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	43.9	9.1e-19
>prophage 8
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	2801003	2913725	4960737	tail,protease,head,integrase,terminase,transposase,portal,capsid,tRNA	Salmonella_phage(26.97%)	149	2877680:2877695	2918510:2918525
VDZ61127.1|2801003_2803052_-|protease	carboxy-terminal protease	protease	A0A0R6PIZ1	Moraxella_phage	33.7	1.2e-87
VDZ61130.1|2803071_2803758_-	putative solute/DNA competence effector	NA	NA	NA	NA	NA
VDZ61134.1|2803854_2804352_-	signal transduction protein	NA	NA	NA	NA	NA
VDZ61138.1|2804480_2805764_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
VDZ61141.1|2805732_2808366_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
VDZ61145.1|2808445_2809867_+	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
VDZ61148.1|2809964_2810204_+	Protein of uncharacterised function (DUF1480)	NA	NA	NA	NA	NA
VDZ61151.1|2810306_2810498_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA	NA
VDZ61154.1|2810498_2811140_-	serine/threonine protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	50.5	8.7e-56
VDZ61158.1|2811624_2811846_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61161.1|2811832_2813299_-	signal transduction protein	NA	NA	NA	NA	NA
VDZ61164.1|2813647_2813806_+	Uncharacterised protein	NA	S4TND2	Salmonella_phage	71.2	1.4e-12
VDZ61169.1|2814070_2815330_-|portal	phage portal protein, HK97 family	portal	Q6UAX8	Klebsiella_phage	89.3	1.7e-220
VDZ61172.1|2815329_2815509_-	Uncharacterised protein	NA	Q6UAX9	Klebsiella_phage	74.6	3.9e-14
VDZ61176.1|2815502_2816318_-|terminase	Phage terminase-like protein, large subunit	terminase	Q6UAY0	Klebsiella_phage	76.0	3.2e-119
VDZ61179.1|2816340_2817219_-|terminase	Phage terminase-like protein, large subunit	terminase	Q6UAY0	Klebsiella_phage	89.7	4.5e-156
VDZ61182.1|2817255_2817690_-|terminase	Phage terminase, small subunit	terminase	Q6UAY1	Klebsiella_phage	89.6	2.3e-68
VDZ61185.1|2817917_2818433_+	Uncharacterised protein	NA	A0A077K9U2	Edwardsiella_phage	48.2	1.4e-32
VDZ61187.1|2819249_2819375_-	GnsA/GnsB family	NA	NA	NA	NA	NA
VDZ61190.1|2820699_2821200_-	prophage protein	NA	A0A291LBG9	Klebsiella_phage	47.1	1.7e-11
VDZ61193.1|2821196_2821745_-	phage lysozyme	NA	K7PM52	Enterobacteria_phage	94.0	2.1e-98
VDZ61196.1|2821716_2821995_-	Uncharacterised protein	NA	K7P6H9	Enterobacteria_phage	98.9	1.5e-44
VDZ61199.1|2822648_2823203_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61202.1|2823189_2823360_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61204.1|2824778_2825210_-	Phage antitermination protein Q	NA	Q8W638	Enterobacteria_phage	59.2	3.9e-36
VDZ61207.1|2825224_2825917_-	Protein of uncharacterised function (DUF968)	NA	A0A291AWV9	Escherichia_phage	42.0	1.4e-64
VDZ61210.1|2825913_2826273_-	Holliday junction resolvase	NA	G8C7V6	Escherichia_phage	64.4	1.4e-42
VDZ61212.1|2826275_2826482_-	Uncharacterised protein	NA	H6WRY8	Salmonella_phage	69.2	3.4e-22
VDZ61214.1|2826481_2827081_-	Protein of uncharacterised function (DUF1367)	NA	K7PKS6	Enterobacteria_phage	95.5	1.1e-105
VDZ61218.1|2827474_2827708_-	damage-inducible protein	NA	K7PM44	Enterobacteria_phage	71.4	8.9e-27
VDZ61221.1|2827983_2828349_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61224.1|2828415_2828691_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61228.1|2828863_2829160_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	A0A0M4QX15	Salmonella_phage	88.3	2.1e-33
VDZ61231.1|2829263_2829650_+	transcriptional repressor DicA	NA	A0A0M4R5D1	Salmonella_phage	85.7	2.9e-54
VDZ61234.1|2829800_2830274_+	Uncharacterised protein	NA	K7PLT9	Enterobacteria_phage	59.1	3.0e-53
VDZ61237.1|2830270_2831203_+	Uncharacterised protein	NA	K7PGT0	Enterobacteria_phage	53.2	1.3e-87
VDZ61240.1|2831235_2831442_-	Uncharacterised protein	NA	K7P7I0	Enterobacteria_phage	66.2	1.4e-15
VDZ61243.1|2831802_2832009_+	FtsZ inhibitor protein KilR	NA	K7PM31	Enterobacteria_phage	98.5	4.3e-33
VDZ61246.1|2832020_2832182_+	Uncharacterised protein	NA	K7PGY4	Enterobacteria_phage	98.1	6.3e-24
VDZ61249.1|2832268_2832556_+	Uncharacterised protein	NA	H6WRX2	Salmonella_phage	77.9	6.2e-38
VDZ61252.1|2832682_2833435_+	Exodeoxyribonuclease 8	NA	S4TNL0	Salmonella_phage	59.9	8.0e-77
VDZ61255.1|2833427_2834081_-|transposase	ISEc14 transposase B	transposase	Q716C2	Shigella_phage	91.7	7.8e-121
VDZ61259.1|2834293_2834596_-|transposase	ISEc14 transposase A	transposase	Q716C1	Shigella_phage	92.0	9.7e-42
VDZ61262.1|2834642_2836289_+	Exodeoxyribonuclease 8	NA	K7P7N5	Enterobacteria_phage	81.7	4.9e-87
VDZ61265.1|2836323_2836668_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61268.1|2836660_2836864_+	Uncharacterised protein	NA	A0A1B0VN94	Pseudomonas_phage	66.7	1.7e-10
VDZ61271.1|2836850_2837093_+	Uncharacterised protein	NA	K7PHF4	Enterobacteria_phage	89.9	1.3e-33
VDZ61273.1|2837157_2837430_+	Excisionase-like protein	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	63.3	3.2e-28
VDZ61276.1|2837398_2838484_+	Site-specific recombinase XerD	NA	A0A2H4IYC8	uncultured_Caudovirales_phage	69.0	9.6e-148
VDZ61279.1|2838820_2839159_-	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
VDZ61282.1|2839179_2840052_-	copper resistance protein	NA	NA	NA	NA	NA
VDZ61285.1|2840055_2840430_-	copper resistance protein	NA	NA	NA	NA	NA
VDZ61288.1|2840573_2840804_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	1.0e-14
VDZ61291.1|2840910_2841420_+	carbon-nitrogen hydrolase	NA	NA	NA	NA	NA
VDZ61294.1|2841589_2842252_+	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	30.6	9.1e-08
VDZ61298.1|2842242_2844321_-|protease	protease II	protease	NA	NA	NA	NA
VDZ61301.1|2844383_2845043_-	Inner membrane protein yebE	NA	NA	NA	NA	NA
VDZ61304.1|2845137_2845500_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61308.1|2845621_2845912_-	DNA damage-inducible protein YebG	NA	NA	NA	NA	NA
VDZ61311.1|2846043_2846940_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
VDZ61315.1|2846908_2847223_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
VDZ61318.1|2847289_2847931_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
VDZ61321.1|2847965_2849777_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
VDZ61324.1|2850010_2851486_-	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	37.1	6.4e-78
VDZ61328.1|2851829_2852723_+	hex-regulon repressor (RpiR-family transcriptional regulator)	NA	NA	NA	NA	NA
VDZ61331.1|2852841_2854284_+	pyruvate kinase	NA	NA	NA	NA	NA
VDZ61335.1|2854326_2855298_-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
VDZ61338.1|2855417_2856737_-	peptidoglycan-binding peptidase	NA	A8ATH6	Listeria_phage	36.8	1.2e-14
VDZ61342.1|2856752_2857712_-	high-affinity zinc transporter periplasmic component	NA	NA	NA	NA	NA
VDZ61345.1|2857775_2858531_+	zinc import ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.3	6.5e-18
VDZ61348.1|2858527_2859313_+	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA	NA
VDZ61351.1|2859391_2860168_-	Holliday junction DNA helicase RuvB	NA	NA	NA	NA	NA
VDZ61354.1|2860409_2861021_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
VDZ61357.1|2861101_2861413_-	crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
VDZ61360.1|2861467_2861623_-	crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
VDZ61363.1|2861657_2862401_-	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA	NA
VDZ61366.1|2862429_2862873_-	dATP pyrophosphohydrolase	NA	NA	NA	NA	NA
VDZ61369.1|2862874_2864647_-|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VDZ61372.1|2864913_2865189_+	isochorismatase	NA	NA	NA	NA	NA
VDZ61375.1|2865835_2866075_+	damage-inducible protein	NA	K7PKR6	Enterobacteria_phage	100.0	7.4e-37
VDZ61379.1|2866160_2866481_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61382.1|2866825_2867095_-	Uncharacterised protein	NA	K7PGV5	Enterobacterial_phage	56.3	2.3e-18
VDZ61384.1|2867173_2867416_+	damage-inducible protein	NA	Q6UAW0	Klebsiella_phage	79.2	1.2e-29
VDZ61387.1|2867550_2868339_-	Uncharacterised protein	NA	K7PM99	Enterobacterial_phage	77.0	3.2e-76
VDZ61392.1|2868430_2868841_-	Uncharacterised protein	NA	A0A1V0E5M2	Salmonella_phage	85.5	1.6e-47
VDZ61395.1|2868850_2869219_-	Uncharacterised protein	NA	A0A1V0E5M3	Salmonella_phage	67.2	1.3e-40
VDZ61398.1|2869215_2869794_-	Uncharacterised protein	NA	H6WRW5	Salmonella_phage	68.6	2.5e-70
VDZ61401.1|2869795_2872507_-	Domain of uncharacterised function (DUF1983)	NA	S4TTF5	Salmonella_phage	94.7	0.0e+00
VDZ61404.1|2872506_2872905_-	Uncharacterised protein	NA	S4TR39	Salmonella_phage	93.9	1.5e-69
VDZ61407.1|2872911_2873496_-	Uncharacterised protein	NA	S4TND4	Salmonella_phage	96.4	1.0e-103
VDZ61409.1|2873495_2874089_-	Uncharacterised protein	NA	S4TSP7	Salmonella_phage	96.4	5.3e-108
VDZ61412.1|2874254_2874479_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61415.1|2874467_2874827_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61418.1|2874872_2875805_-|tail	Phage-related minor tail protein	tail	S4TTF9	Salmonella_phage	36.5	1.8e-33
VDZ61421.1|2875912_2877346_-|tail	Prophage tail length tape measure protein	tail	K7PM62	Enterobacteria_phage	73.8	1.0e-181
VDZ61424.1|2877404_2877782_-	Uncharacterised protein	NA	NA	NA	NA	NA
2877680:2877695	attL	CCCTTTCATCAAAATT	NA	NA	NA	NA
VDZ61427.1|2877853_2878030_-	Uncharacterised protein	NA	A0A286S1P2	Klebsiella_phage	58.6	1.4e-11
VDZ61430.1|2878140_2878521_-	Uncharacterised protein	NA	K7PJU9	Enterobacteria_phage	76.6	1.0e-43
VDZ61433.1|2878573_2879065_-	Uncharacterised protein	NA	A0A286S1Q8	Klebsiella_phage	70.0	1.1e-61
VDZ61436.1|2879124_2879490_-	Protein of uncharacterised function (DUF3168)	NA	A0A286S1R1	Klebsiella_phage	70.2	1.3e-48
VDZ61439.1|2879486_2880026_-	phage protein, HK97 gp10 family	NA	K7PM60	Enterobacteria_phage	86.0	1.2e-79
VDZ61444.1|2880018_2880351_-|head,tail	Bacteriophage head-tail adaptor	head,tail	K7PH08	Enterobacteria_phage	90.0	7.1e-54
VDZ61448.1|2880634_2880952_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A1W6JNZ5	Morganella_phage	52.9	1.8e-22
VDZ61451.1|2881029_2882268_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A1W6JP20	Morganella_phage	68.0	2.1e-154
VDZ61456.1|2882277_2882877_-|head,protease	phage prohead protease, HK97 family	head,protease	Q8SBH9	Shigella_phage	83.0	1.6e-91
VDZ61459.1|2882869_2884096_-|portal	phage portal protein, HK97 family	portal	Q8SBI0	Shigella_phage	86.5	8.1e-212
VDZ61462.1|2884085_2884247_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61464.1|2884243_2886001_-|terminase	Phage terminase-like protein, large subunit	terminase	A0A1B5FP96	Escherichia_phage	90.7	0.0e+00
VDZ61466.1|2886000_2886498_-|terminase	Phage terminase, small subunit	terminase	K7PHI2	Enterobacteria_phage	73.9	9.7e-63
VDZ61468.1|2886738_2886996_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61470.1|2886995_2887262_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61473.1|2887363_2887597_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61476.1|2888516_2889065_+|transposase	IS3 family transposase B	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.0	3.2e-06
VDZ61480.1|2889171_2889375_-	Uncharacterised protein	NA	A0A1W6JPG4	Morganella_phage	62.9	2.0e-06
VDZ61483.1|2889642_2889771_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61486.1|2889907_2890162_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61489.1|2890360_2890909_-	phage lysozyme	NA	K7PM52	Enterobacteria_phage	96.2	3.8e-100
VDZ61492.1|2890880_2891159_-	Uncharacterised protein	NA	K7PGZ9	Enterobacteria_phage	97.8	5.1e-45
VDZ61495.1|2891603_2892101_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61499.1|2892252_2892939_-	Uncharacterized phage-encoded protein	NA	A0A192Y918	Salmonella_phage	78.5	2.8e-100
VDZ61502.1|2893208_2893898_-	phage antiterminator protein	NA	NA	NA	NA	NA
VDZ61505.1|2893919_2894915_-	Protein of uncharacterised function (DUF968)	NA	A0A291AWV9	Escherichia_phage	69.6	1.5e-142
VDZ61508.1|2894911_2895595_-	Uncharacterized phage-encoded protein	NA	G0ZND1	Cronobacter_phage	60.4	7.1e-64
VDZ61511.1|2895608_2895995_-	Crossover junction endodeoxyribonuclease rusA	NA	A0A192Y8N5	Salmonella_phage	89.1	2.4e-61
VDZ61514.1|2896109_2897003_-	prophage DNA adenine methylase	NA	Q8HA94	Salmonella_phage	78.2	3.8e-134
VDZ61516.1|2896999_2897851_-	Conserved phage C-terminus (Phg_2220_C)	NA	U5P0A0	Shigella_phage	87.8	1.9e-34
VDZ61519.1|2898192_2898825_-	prophage DNA-binding protein	NA	A0A1C9II13	Salmonella_phage	66.7	3.8e-64
VDZ61522.1|2898772_2899015_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	K7PHA1	Enterobacteria_phage	67.1	1.1e-19
VDZ61525.1|2899114_2899825_+	phage repressor protein	NA	G8C7U1	Escherichia_phage	66.5	4.4e-77
VDZ61528.1|2899900_2900107_-	Uncharacterised protein	NA	K7P7I0	Enterobacteria_phage	70.6	1.1e-17
VDZ61531.1|2900759_2901131_+	Uncharacterised protein	NA	Q8HAA1	Salmonella_phage	92.7	1.1e-58
VDZ61533.1|2901187_2902015_+	Uncharacterized conserved protein	NA	Q8HAA2	Salmonella_phage	90.9	3.3e-140
VDZ61535.1|2902143_2902683_+	Uncharacterised protein	NA	A0A192Y8M4	Salmonella_phage	69.3	5.9e-66
VDZ61537.1|2902670_2902847_+	prophage protein	NA	NA	NA	NA	NA
VDZ61539.1|2902843_2903098_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61541.1|2903094_2903586_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61543.1|2903582_2904260_+	Uncharacterised protein	NA	S4TNP2	Salmonella_phage	76.5	8.7e-14
VDZ61545.1|2904264_2904465_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ61547.1|2904468_2905026_+	Uncharacterised protein	NA	A0A192Y6F5	Salmonella_phage	73.2	1.2e-29
VDZ61549.1|2905027_2905228_+	prophage exonuclease	NA	A0A192Y6E0	Salmonella_phage	90.9	1.6e-29
VDZ61551.1|2905636_2905873_+	Putative excisionase (DUF1233)	NA	Q8W657	Enterobacteria_phage	89.7	4.6e-39
VDZ61553.1|2905931_2907245_+|integrase	phage integrase	integrase	Q8W658	Enterobacteria_phage	89.9	2.5e-235
VDZ61555.1|2907271_2907997_+	Protein of uncharacterised function DUF72	NA	Q859D1	Escherichia_coli_phage	79.5	1.2e-56
VDZ61557.1|2908049_2908445_+	Inner membrane protein yecN	NA	NA	NA	NA	NA
VDZ61559.1|2908485_2909229_+|tRNA	tRNA (cmo5U34)-methyltransferase	tRNA	F5B419	Synechococcus_phage	31.3	3.2e-25
VDZ61561.1|2909225_2910194_+|tRNA	tRNA (mo5U34)-methyltransferase	tRNA	NA	NA	NA	NA
VDZ61563.1|2910437_2911184_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
VDZ61565.1|2911186_2911753_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ61567.1|2911991_2913725_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2K9L6Z2	Tupanvirus	33.6	1.7e-85
2918510:2918525	attR	CCCTTTCATCAAAATT	NA	NA	NA	NA
>prophage 9
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	3074662	3082883	4960737		Enterobacteria_phage(42.86%)	8	NA	NA
VDZ62071.1|3074662_3075766_-	TDP-4-oxo-6-deoxy-D-glucose transaminase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	30.9	5.9e-36
VDZ62074.1|3075782_3076178_-	WxcM-like, C-terminal	NA	NA	NA	NA	NA
VDZ62077.1|3076174_3076726_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	50.0	3.5e-45
VDZ62080.1|3077139_3078018_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	63.4	2.3e-107
VDZ62083.1|3078071_3078971_-	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	36.3	2.1e-31
VDZ62086.1|3078970_3080056_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.1	6.3e-99
VDZ62089.1|3080429_3081323_-	UTP--glucose-1-phosphate uridylyltransferase subunit GalF	NA	A0A127AW70	Bacillus_phage	39.9	4.3e-45
VDZ62092.1|3081488_3082883_-	putative colanic acid biosynthesis protein	NA	A0A291LBB9	Klebsiella_phage	35.0	6.1e-22
>prophage 10
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	3177045	3185464	4960737	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
VDZ62345.1|3177045_3179079_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.0e-54
VDZ62348.1|3179285_3179744_+	Uncharacterized lipoprotein yehR precursor	NA	Q9EYF5	Enterobacteria_phage	68.0	5.1e-50
VDZ62351.1|3179786_3180257_-	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	76.9	4.9e-64
VDZ62354.1|3180303_3181023_-	putative two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VDZ62357.1|3181019_3182705_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.6	6.7e-281
VDZ62360.1|3182930_3183662_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	93.5	1.0e-105
VDZ62363.1|3183713_3183821_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ62367.1|3183801_3184533_-	ABC transporter permease	NA	NA	NA	NA	NA
VDZ62370.1|3184516_3185464_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	25.8	2.0e-08
>prophage 11
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	4960737	4209471	4284085	4960737	holin,tail,integrase,terminase,capsid,portal,tRNA	Cronobacter_phage(68.29%)	87	4210742:4210758	4296495:4296511
VDZ64793.1|4209471_4210713_+|tRNA	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	49.5	8.2e-95
4210742:4210758	attL	GCCTTATCCGGCCTACA	NA	NA	NA	NA
VDZ64795.1|4210760_4211630_-	UDP-diphosphatase	NA	NA	NA	NA	NA
VDZ64797.1|4211716_4212085_-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase	NA	NA	NA	NA	NA
VDZ64799.1|4212191_4212809_+	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
VDZ64801.1|4212840_4213782_-	transcriptional activator TtdR	NA	NA	NA	NA	NA
VDZ64803.1|4213994_4214903_+	tartrate dehydratase subunit alpha	NA	NA	NA	NA	NA
VDZ64805.1|4214899_4215505_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA	NA
VDZ64807.1|4215553_4217017_+	tartrate carrier protein	NA	NA	NA	NA	NA
VDZ64809.1|4217222_4217963_+	urease accessory protein UreD	NA	NA	NA	NA	NA
VDZ64811.1|4218004_4218277_+	urease subunit gamma	NA	NA	NA	NA	NA
VDZ64813.1|4218286_4218442_+	urease subunit beta	NA	NA	NA	NA	NA
VDZ64815.1|4218600_4220304_+	urease subunit alpha	NA	NA	NA	NA	NA
VDZ64817.1|4220312_4220771_+	urease accessory protein UreE	NA	NA	NA	NA	NA
VDZ64819.1|4220770_4221442_+	urease accessory protein UreF	NA	NA	NA	NA	NA
VDZ64821.1|4221451_4222069_+	urease accessory protein ureg	NA	NA	NA	NA	NA
VDZ64823.1|4222106_4223120_-	putative DNA-binding/iron metalloprotein/AP endonuclease	NA	A0A0R6PI74	Moraxella_phage	59.8	7.4e-110
VDZ64825.1|4223356_4223572_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
VDZ64827.1|4223809_4225555_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.8	8.4e-77
VDZ64829.1|4225914_4227762_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
VDZ64831.1|4227923_4228127_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64833.1|4228092_4228224_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64835.1|4228174_4228975_+	PQQ-dependent catabolism-associated beta-propeller protein	NA	NA	NA	NA	NA
VDZ64837.1|4228986_4229169_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64839.1|4229211_4230984_+	putative outer membrane receptor	NA	A0A0P0I887	Acinetobacter_phage	35.9	8.7e-05
VDZ64841.1|4231014_4231521_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
VDZ64843.1|4232031_4232814_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64845.1|4233358_4235062_-	VgrG family T6SS protein Cts2G	NA	F1BUJ7	Cronobacter_phage	78.3	3.1e-217
VDZ64847.1|4235061_4235607_-	Uncharacterised protein	NA	F1BUJ9	Cronobacter_phage	73.1	3.0e-65
VDZ64849.1|4235578_4236304_-	Uncharacterised protein	NA	F1BUK1	Cronobacter_phage	50.6	2.9e-55
VDZ64851.1|4236293_4236830_-|tail	phage tail fiber assembly protein	tail	F1BUK2	Cronobacter_phage	35.2	5.8e-21
VDZ64853.1|4236842_4238846_-|tail	phage tail fiber protein	tail	F1BUK3	Cronobacter_phage	77.5	1.5e-146
VDZ64855.1|4238856_4239444_-	Uncharacterised protein	NA	F1BUK5	Cronobacter_phage	83.1	1.1e-92
VDZ64857.1|4239436_4240621_-	Uncharacterized homolog of phage Mu protein gp47	NA	F1BUK6	Cronobacter_phage	80.9	1.3e-182
VDZ64859.1|4240617_4240947_-	Protein of uncharacterised function (DUF2590)	NA	F1BUK8	Cronobacter_phage	68.8	9.3e-38
VDZ64861.1|4240943_4243004_-|tail	Phage-related minor tail protein	tail	F1BUK9	Cronobacter_phage	69.2	1.7e-270
VDZ64863.1|4243191_4243449_-	Protein of uncharacterised function (DUF2765)	NA	A5X9I7	Aeromonas_virus	57.3	4.9e-18
VDZ64865.1|4243553_4243934_-	Uncharacterised protein	NA	F1BUL2	Cronobacter_phage	64.2	5.3e-29
VDZ64867.1|4243933_4244275_-	Uncharacterised protein	NA	F1BUL3	Cronobacter_phage	94.1	6.9e-52
VDZ64869.1|4244261_4244564_-|holin	Phage holin family 2	holin	A0A0M5M1H1	Salmonella_phage	55.3	1.4e-19
VDZ64871.1|4244574_4245030_-	Protein of uncharacterised function (DUF2597)	NA	F1BUL4	Cronobacter_phage	72.8	5.9e-59
VDZ64873.1|4245026_4246154_-	Protein of uncharacterised function (DUF2586)	NA	F1BUL5	Cronobacter_phage	81.1	7.6e-172
VDZ64875.1|4246150_4246858_-	Uncharacterised protein	NA	F1BUL6	Cronobacter_phage	75.6	3.7e-100
VDZ64877.1|4246854_4247361_-|tail	P2 phage tail completion protein R (GpR)	tail	F1BUL7	Cronobacter_phage	68.7	4.7e-65
VDZ64878.1|4247357_4247861_-|capsid	capsid completion protein	capsid	F1BUL8	Cronobacter_phage	83.3	6.8e-64
VDZ64880.1|4247906_4248608_-|terminase	Phage small terminase subunit	terminase	F1BUM0	Cronobacter_phage	69.4	2.0e-90
VDZ64882.1|4248611_4249634_-|capsid	major capsid protein	capsid	F1BUM2	Cronobacter_phage	81.8	1.0e-159
VDZ64884.1|4249695_4250499_-|capsid	capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	57.1	3.4e-81
VDZ64886.1|4250660_4252436_+|terminase	large terminase subunit	terminase	F1BUM5	Cronobacter_phage	83.6	6.8e-292
VDZ64888.1|4252432_4253494_+|capsid,portal	capsid portal protein	capsid,portal	F1BUM7	Cronobacter_phage	77.5	1.0e-162
VDZ64890.1|4253544_4253814_+	Ogr/Delta-like zinc finger	NA	F1BUM8	Cronobacter_phage	94.3	5.1e-42
VDZ64892.1|4253787_4253994_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64894.1|4254113_4255451_-	phage DNA replication protein	NA	F1BUM9	Cronobacter_phage	73.4	1.4e-188
VDZ64896.1|4255401_4256130_-	Bacteriophage replication gene A protein (GPA)	NA	F1BUM9	Cronobacter_phage	62.8	1.0e-81
VDZ64898.1|4256131_4256344_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64900.1|4256340_4257210_-	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	3.8e-131
VDZ64902.1|4257200_4257434_-	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA	NA
VDZ64904.1|4257501_4257903_-	Uncharacterised protein	NA	F1BUN2	Cronobacter_phage	66.9	2.2e-49
VDZ64906.1|4257902_4258331_-	Uncharacterised protein	NA	F1BUN5	Cronobacter_phage	52.8	7.4e-27
VDZ64908.1|4258320_4258548_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64910.1|4258557_4259061_-	Phage regulatory protein CII (CP76)	NA	F1BUN6	Cronobacter_phage	71.9	1.3e-59
VDZ64912.1|4259091_4259313_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64914.1|4259446_4260028_+	Bacteriophage CI repressor helix-turn-helix domain	NA	F1BUS8	Erwinia_phage	36.0	3.7e-29
VDZ64916.1|4260029_4261073_+|integrase	phage integrase	integrase	F1BUS9	Erwinia_phage	63.8	1.6e-123
VDZ64918.1|4261065_4261293_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64920.1|4261246_4262887_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64922.1|4263265_4263565_-	Domain of uncharacterised function (DUF1889)	NA	NA	NA	NA	NA
VDZ64924.1|4263698_4265513_-	propanediol utilization diol dehydratase reactivation protein	NA	NA	NA	NA	NA
VDZ64926.1|4265523_4265952_-	propanediol utilization dehydratase, small subunit	NA	NA	NA	NA	NA
VDZ64928.1|4265954_4266539_-	propanediol utilization dehydratase, medium subunit	NA	NA	NA	NA	NA
VDZ64930.1|4266550_4268218_-	glycerol dehydratase large subunit	NA	NA	NA	NA	NA
VDZ64932.1|4268610_4269039_+	propanediol utilization: B12 related	NA	NA	NA	NA	NA
VDZ64934.1|4269061_4270225_+	putative alcohol dehydrogenase	NA	NA	NA	NA	NA
VDZ64936.1|4270241_4270595_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ64938.1|4270595_4271126_+	propanediol utilization: B12 related	NA	NA	NA	NA	NA
VDZ64939.1|4271103_4272531_-	DNA-binding transcriptional regulator DhaR	NA	NA	NA	NA	NA
VDZ64941.1|4272619_4273030_-	DNA-binding transcriptional regulator DhaR	NA	NA	NA	NA	NA
VDZ64943.1|4273121_4274219_-	glycerol dehydrogenase	NA	NA	NA	NA	NA
VDZ64945.1|4274781_4275510_+	dihydroxyacetone kinase	NA	NA	NA	NA	NA
VDZ64947.1|4275499_4276411_+	dihydroxyacetone kinase	NA	NA	NA	NA	NA
VDZ64949.1|4276529_4276760_-	cyclopropane fatty acyl phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	47.1	4.7e-12
VDZ64950.1|4276743_4277625_-	cyclopropane fatty acyl phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	45.1	1.3e-62
VDZ64952.1|4277752_4278601_+	pdu/cob regulatory protein pocR	NA	NA	NA	NA	NA
VDZ64954.1|4278690_4279380_-	siderophore-interacting protein	NA	NA	NA	NA	NA
VDZ64956.1|4279619_4280210_+	transcriptional Regulator	NA	NA	NA	NA	NA
VDZ64958.1|4280348_4281869_-	aerotaxis receptor protein	NA	A0A1B0V854	Salmonella_phage	49.3	2.9e-33
VDZ64960.1|4282203_4283679_+	putrescine--2-oxoglutarate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.7	2.8e-33
VDZ64962.1|4283752_4284085_-|tRNA	methionyl-tRNA synthetase	tRNA	NA	NA	NA	NA
4296495:4296511	attR	TGTAGGCCGGATAAGGC	NA	NA	NA	NA
