assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	1	806072-806156	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	806098-806130|806098-806130	LR134093.1_1052187-1052219|LR134093.1_2394822-2394790	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|254aa|up_9|LR134093.1_793564_794326_-	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|357aa|up_8|LR134093.1_794521_795592_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_7|LR134093.1_795909_796965_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_6|LR134093.1_797128_797770_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_5|LR134093.1_797913_798780_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_4|LR134093.1_799143_800226_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_3|LR134093.1_800218_800893_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_2|LR134093.1_800953_801526_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_1|LR134093.1_801939_804471_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_0|LR134093.1_804903_805896_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|LR134093.1_806664_807504_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|LR134093.1_807677_808328_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|LR134093.1_808324_808561_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|LR134093.1_808829_810815_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|LR134093.1_810822_813669_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|LR134093.1_814279_815212_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|LR134093.1_815217_816060_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|LR134093.1_816067_816553_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|LR134093.1_816560_818000_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|LR134093.1_818066_819002_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2	877333-877412	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|195aa|up_9|LR134093.1_870283_870868_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|LR134093.1_870940_871558_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|LR134093.1_871713_872208_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|LR134093.1_872606_873029_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|LR134093.1_873176_873893_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|LR134093.1_873975_874515_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|LR134093.1_874664_874985_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|LR134093.1_875128_875485_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|LR134093.1_875642_876023_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|331aa|up_0|LR134093.1_876086_877079_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LR134093.1_877666_878056_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LR134093.1_878048_878345_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LR134093.1_878594_879620_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LR134093.1_879612_880308_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LR134093.1_880325_881147_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|LR134093.1_881962_882157_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|LR134093.1_882390_883242_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|LR134093.1_883569_884331_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|LR134093.1_884428_885736_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|LR134093.1_885850_887092_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	3	926454-926539	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	926484-926509|926484-926509	LR134093.1_2132442-2132467|LR134093.1_2192524-2192549	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|LR134093.1_915343_916840_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|LR134093.1_916832_917174_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|LR134093.1_917173_917602_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|LR134093.1_917594_920000_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|LR134093.1_920130_920514_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|LR134093.1_920577_921171_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|LR134093.1_921585_921963_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|LR134093.1_922324_923452_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|LR134093.1_923759_924950_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|LR134093.1_925058_926303_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|LR134093.1_926697_927627_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|LR134093.1_927868_929248_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|LR134093.1_929237_930443_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|LR134093.1_930793_932125_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|LR134093.1_932450_933026_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|LR134093.1_933030_933555_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|LR134093.1_933570_934146_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|LR134093.1_934305_937782_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|LR134093.1_937782_941436_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|LR134093.1_941601_942504_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	4	1229465-1229557	4	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|LR134093.1_1219339_1219984_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|LR134093.1_1219990_1220632_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|LR134093.1_1221012_1221201_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|LR134093.1_1221643_1222018_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|LR134093.1_1222032_1223679_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|LR134093.1_1223868_1225929_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|186aa|up_3|LR134093.1_1226146_1226704_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|LR134093.1_1226708_1227695_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|LR134093.1_1227687_1228614_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|LR134093.1_1228606_1229341_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|LR134093.1_1229646_1229880_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|LR134093.1_1229995_1230727_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|LR134093.1_1230873_1234440_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|LR134093.1_1234439_1235690_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|LR134093.1_1235676_1236009_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|LR134093.1_1236034_1237402_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|LR134093.1_1237836_1238112_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|LR134093.1_1238299_1238803_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|LR134093.1_1238802_1239540_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|LR134093.1_1239642_1239993_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	5	1951183-1951310	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|LR134093.1_1943342_1943738_-,NA|51aa|up_6|LR134093.1_1944338_1944491_-,NA	NA|274aa|up_9|LR134093.1_1940484_1941306_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|LR134093.1_1941761_1943147_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|LR134093.1_1943342_1943738_-	NA	NA|51aa|up_6|LR134093.1_1944338_1944491_-	NA	NA|200aa|up_5|LR134093.1_1944515_1945115_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|LR134093.1_1945273_1945744_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|LR134093.1_1945748_1946876_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|LR134093.1_1947026_1947755_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|LR134093.1_1947741_1949199_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|LR134093.1_1949457_1950519_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|LR134093.1_1959331_1959778_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|320aa|down_1|LR134093.1_1959874_1960834_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|LR134093.1_1960830_1961286_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|LR134093.1_1961366_1962656_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|382aa|down_4|LR134093.1_1962897_1964043_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|LR134093.1_1964233_1965970_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|LR134093.1_1966260_1966803_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|LR134093.1_1967105_1968143_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|LR134093.1_1968294_1969272_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|LR134093.1_1969532_1970369_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	6	1995985-1996176	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	1996006-1996042|1996064-1996097|1996064-1996097|1996064-1996097|1996064-1996097|1996064-1996097|1996064-1996097|1996064-1996097|1996064-1996097	LR134093.1_819364-819400|LR134093.1_255950-255917|LR134093.1_332369-332336|LR134093.1_772966-772933|LR134093.1_806137-806170|LR134093.1_1078344-1078377|LR134093.1_1773201-1773168|LR134093.1_2359428-2359461|LR134093.1_2502574-2502541	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|138aa|up_8|LR134093.1_1986948_1987362_-,NA	NA|329aa|up_9|LR134093.1_1985773_1986760_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|up_8|LR134093.1_1986948_1987362_-	NA	NA|244aa|up_7|LR134093.1_1987586_1988318_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_6|LR134093.1_1988319_1989633_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_5|LR134093.1_1989924_1990425_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	DEDDh|185aa|up_4|LR134093.1_1990815_1991370_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|LR134093.1_1991436_1992507_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|LR134093.1_1992753_1993284_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|LR134093.1_1993453_1994815_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|LR134093.1_1994895_1995843_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|476aa|down_0|LR134093.1_1996665_1998093_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_1|LR134093.1_1998105_1999563_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_2|LR134093.1_1999564_1999867_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_3|LR134093.1_2000233_2001772_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_4|LR134093.1_2001860_2003060_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_5|LR134093.1_2003072_2005076_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_6|LR134093.1_2005079_2007272_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_7|LR134093.1_2007268_2007961_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_8|LR134093.1_2008143_2008446_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]	NA|432aa|down_9|LR134093.1_2008554_2009850_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	7	2106737-2106825	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|127aa|up_8|LR134093.1_2101787_2102168_-,NA|128aa|up_4|LR134093.1_2105453_2105837_-,NA|68aa|up_3|LR134093.1_2105838_2106042_-,NA|52aa|up_2|LR134093.1_2106026_2106182_-,NA	NA|214aa|up_9|LR134093.1_2101149_2101791_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_8|LR134093.1_2101787_2102168_-	NA	NA|570aa|up_7|LR134093.1_2102479_2104189_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_6|LR134093.1_2104202_2105072_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|LR134093.1_2105135_2105453_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|LR134093.1_2105453_2105837_-	NA	NA|68aa|up_3|LR134093.1_2105838_2106042_-	NA	NA|52aa|up_2|LR134093.1_2106026_2106182_-	NA	NA|106aa|up_1|LR134093.1_2106178_2106496_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|LR134093.1_2106500_2106719_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|LR134093.1_2106891_2107566_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|LR134093.1_2107579_2108752_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|LR134093.1_2108820_2110437_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|LR134093.1_2110512_2110797_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|LR134093.1_2110971_2111715_+	pfam02517, Abi, CAAX protease self-immunity	NA|405aa|down_5|LR134093.1_2111739_2112954_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|LR134093.1_2113150_2113777_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|LR134093.1_2114137_2114923_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|263aa|down_8|LR134093.1_2115255_2116044_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|243aa|down_9|LR134093.1_2116067_2116796_-	pfam13518, HTH_28, Helix-turn-helix domain
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	8	2260922-2261123	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|364aa|up_9|LR134093.1_2238887_2239979_+,NA	NA|364aa|up_9|LR134093.1_2238887_2239979_+	NA	NA|549aa|up_8|LR134093.1_2240266_2241913_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|286aa|up_7|LR134093.1_2243939_2244797_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_6|LR134093.1_2244864_2245647_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_5|LR134093.1_2245878_2247684_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_4|LR134093.1_2248364_2249903_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_3|LR134093.1_2249937_2252070_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_2|LR134093.1_2252081_2252516_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_1|LR134093.1_2252515_2253622_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2224aa|up_0|LR134093.1_2253940_2260612_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|41aa|down_0|LR134093.1_2261206_2261329_-	pfam04650, YSIRK_signal, YSIRK type signal peptide	NA|452aa|down_1|LR134093.1_2261611_2262967_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_2|LR134093.1_2262993_2263926_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_3|LR134093.1_2263927_2264737_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_4|LR134093.1_2264926_2265835_-	cd09989, Arginase, Arginase family	NA|355aa|down_5|LR134093.1_2272053_2273118_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|363aa|down_6|LR134093.1_2273265_2274354_-	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|132aa|down_7|LR134093.1_2274313_2274709_-	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|156aa|down_8|LR134093.1_2274897_2275365_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_9|LR134093.1_2275492_2276836_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	9	2319457-2319582	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|98aa|up_9|LR134093.1_2307692_2307986_-,NA|42aa|up_8|LR134093.1_2307940_2308066_-,NA	NA|98aa|up_9|LR134093.1_2307692_2307986_-	NA	NA|42aa|up_8|LR134093.1_2307940_2308066_-	NA	NA|283aa|up_7|LR134093.1_2308286_2309135_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|139aa|up_6|LR134093.1_2309204_2309621_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|809aa|up_5|LR134093.1_2310027_2312454_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_4|LR134093.1_2312513_2313368_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_3|LR134093.1_2313578_2314394_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_2|LR134093.1_2314688_2315114_+	pfam03642, MAP, MAP domain	NA|235aa|up_1|LR134093.1_2315504_2316209_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_0|LR134093.1_2316245_2317910_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|479aa|down_0|LR134093.1_2319639_2321076_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|LR134093.1_2321424_2321823_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|LR134093.1_2321836_2322274_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|LR134093.1_2322522_2323317_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|LR134093.1_2323321_2324128_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|LR134093.1_2324117_2324978_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|LR134093.1_2324974_2325784_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|243aa|down_7|LR134093.1_2326186_2326915_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|263aa|down_8|LR134093.1_2326938_2327727_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_9|LR134093.1_2327979_2328348_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated
GCA_900635335.1_41556_G01	LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	10	2359464-2359544	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	4	2359489-2359519|2359489-2359519|2359489-2359519|2359489-2359519	LR134093.1_1078407-1078437|LR134093.1_1653391-1653421|LR134093.1_881645-881615|LR134093.1_926475-926445	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_8|LR134093.1_2349993_2350158_+,NA|106aa|up_7|LR134093.1_2350402_2350720_+,NA|84aa|up_4|LR134093.1_2355844_2356096_+,NA	NA|303aa|up_9|LR134093.1_2348952_2349861_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|LR134093.1_2349993_2350158_+	NA	NA|106aa|up_7|LR134093.1_2350402_2350720_+	NA	NA|1056aa|up_6|LR134093.1_2350906_2354074_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|LR134093.1_2354190_2355456_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|LR134093.1_2355844_2356096_+	NA	NA|255aa|up_3|LR134093.1_2356087_2356852_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|LR134093.1_2357014_2357455_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|LR134093.1_2357447_2358659_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|LR134093.1_2358760_2359111_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|LR134093.1_2359687_2360710_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|LR134093.1_2360729_2361329_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|LR134093.1_2361335_2361569_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|LR134093.1_2361574_2362021_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|LR134093.1_2362034_2362520_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|LR134093.1_2362516_2363776_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|LR134093.1_2363838_2364333_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|LR134093.1_2364334_2364841_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|LR134093.1_2364869_2365874_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|LR134093.1_2366041_2366647_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
