The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	355845	374066	2838411	terminase,integrase,transposase	Staphylococcus_phage(90.48%)	27	359068:359082	374346:374360
VDZ36996.1|355845_356037_-	Uncharacterised protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
VDZ36997.1|356280_356577_+	30S ribosomalprotein S6p	NA	NA	NA	NA	NA
VDZ36998.1|356597_357101_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
VDZ36999.1|357152_357395_+	30S ribosomalprotein S18p	NA	NA	NA	NA	NA
VDZ37000.1|357626_358346_-	PemK-like growth inhibitor	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
VDZ37001.1|358458_359673_-	Integrase	NA	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
359068:359082	attL	AATTAGATAGTCGAA	NA	NA	NA	NA
VDZ37002.1|359833_360457_-	DNA-binding protein	NA	NA	NA	NA	NA
VDZ37003.1|360605_360770_+	putative DNA-binding protein	NA	NA	NA	NA	NA
VDZ37004.1|360770_361043_+	pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
VDZ37005.1|361054_361228_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VDZ37006.1|361194_361398_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
VDZ37007.1|361399_361783_+	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
VDZ37008.1|361783_362110_+	mobile element-associated protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
VDZ37009.1|362174_363044_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	99.3	6.0e-169
VDZ37010.1|363057_364767_+	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	92.8	8.2e-303
VDZ37011.1|365076_365457_+	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
VDZ37012.1|365453_366095_+	mobile element-associated protein, putative	NA	Q4ZE67	Staphylococcus_phage	92.5	4.7e-110
VDZ37013.1|366802_367147_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
VDZ37014.1|367177_367831_+	Uncharacterised protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
VDZ37015.1|367883_368411_+	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
VDZ37016.1|368413_368755_+|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	98.2	1.1e-57
VDZ37017.1|368751_369321_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	98.9	3.5e-101
VDZ37018.1|369597_370566_+	abortive infection bacteriophage resistance protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
VDZ37019.1|370743_371145_+	phage protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	59.1	5.1e-22
VDZ37020.1|371262_371775_+	pathogenicity island protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
VDZ37021.1|372733_373741_-	abi-like family protein	NA	NA	NA	NA	NA
VDZ37022.1|373817_374066_-|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	73.4	2.0e-24
374346:374360	attR	AATTAGATAGTCGAA	NA	NA	NA	NA
>prophage 2
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	688434	698996	2838411	bacteriocin,transposase	Staphylococcus_phage(57.14%)	12	NA	NA
VDZ37299.1|688434_689673_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	99.5	6.5e-209
VDZ37300.1|689699_690374_+|transposase	IS431 transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
VDZ37301.1|690408_690621_-	membrane protein	NA	NA	NA	NA	NA
VDZ37302.1|690958_691276_+	recombinase	NA	NA	NA	NA	NA
VDZ37303.1|691336_691651_+	arsenical resistance operon repressor	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
VDZ37304.1|691650_692940_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
VDZ37305.1|692957_693353_+	arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
VDZ37306.1|693732_694026_+|bacteriocin	bacteriocin, lactococcin 972 family protein	bacteriocin	NA	NA	NA	NA
VDZ37307.1|694100_696035_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
VDZ37308.1|696038_696350_+	putative DUF1093-containing protein	NA	NA	NA	NA	NA
VDZ37309.1|696361_696988_+|bacteriocin	bacteriocin export ABC transporter, lactococcin 972 group family protein	bacteriocin	G3M9Y6	Bacillus_virus	33.7	6.1e-22
VDZ37310.1|697349_698996_+|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 3
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	751314	759134	2838411		Hokovirus(16.67%)	10	NA	NA
VDZ37364.1|751314_752370_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VDZ37365.1|752369_753056_-	Response regulator SaeR	NA	NA	NA	NA	NA
VDZ37366.1|753030_753504_-	DoxX family protein	NA	NA	NA	NA	NA
VDZ37367.1|753845_754286_-	lipoprotein	NA	NA	NA	NA	NA
VDZ37368.1|754565_755150_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37369.1|755248_755962_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
VDZ37370.1|755965_756385_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
VDZ37371.1|756386_757055_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VDZ37372.1|757405_757999_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
VDZ37373.1|757982_759134_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	771106	785244	2838411		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
VDZ37382.1|771106_772165_+	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
VDZ37383.1|772323_772866_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VDZ37384.1|772870_773005_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37385.1|773417_774335_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
VDZ37386.1|774604_776110_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VDZ37387.1|776449_776950_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
VDZ37388.1|776969_777836_-	Integral membrane domain protein	NA	NA	NA	NA	NA
VDZ37389.1|778637_779036_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
VDZ37390.1|778998_781104_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
VDZ37391.1|781223_782195_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
VDZ37392.1|782571_783543_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
VDZ37393.1|783529_784486_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
VDZ37394.1|784482_785244_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	837813	851813	2838411	integrase	Staphylococcus_phage(41.67%)	16	841108:841122	854024:854038
VDZ37440.1|837813_840186_+	3'-to-5' exoribonuclease RNase R	NA	Q0GXV6	Lactococcus_phage	38.8	1.9e-92
VDZ37441.1|840207_840672_+	tmRNA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
841108:841122	attL	TCCCGCCGTCTCCAT	NA	NA	NA	NA
VDZ37442.1|841227_841443_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37443.1|841454_842570_-|integrase	integrase	integrase	H0UST3	Bacillus_phage	43.9	7.0e-77
VDZ37444.1|842575_843313_-	helix-turn-helix DNA binding protein	NA	A0A1W6JQE6	Staphylococcus_phage	31.2	1.2e-05
VDZ37445.1|843464_843683_+	putative plasmid copy control protein	NA	NA	NA	NA	NA
VDZ37446.1|843694_843841_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VDZ37447.1|843833_844058_+	pathogenicity island protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	2.9e-14
VDZ37448.1|844058_844358_+	bovine pathogenicity island protein Orf16	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
VDZ37449.1|844449_846822_+	Putative DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	38.8	4.1e-135
VDZ37450.1|847504_847849_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	5.5e-41
VDZ37451.1|848073_848280_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ37452.1|848266_849325_+	pahtogenicity island protein	NA	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
VDZ37453.1|849509_850001_+	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
VDZ37454.1|850429_851398_+	abortive infection bacteriophage resistance protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
VDZ37455.1|851576_851813_+	pathogenicity island protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	50.6	1.2e-15
854024:854038	attR	TCCCGCCGTCTCCAT	NA	NA	NA	NA
>prophage 6
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	1053657	1062130	2838411		Synechococcus_phage(33.33%)	9	NA	NA
VDZ37648.1|1053657_1054140_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
VDZ37649.1|1054126_1055251_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
VDZ37650.1|1055254_1055959_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
VDZ37651.1|1055958_1056222_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VDZ37652.1|1056223_1056895_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VDZ37653.1|1056887_1059077_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
VDZ37654.1|1059055_1060540_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
VDZ37655.1|1060532_1061561_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
VDZ37656.1|1061563_1062130_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 7
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	1255767	1326403	2838411	lysis,tRNA,protease,transposase	Cafeteria_roenbergensis_virus(13.33%)	60	NA	NA
VDZ37833.1|1255767_1256313_+|protease	ATP-dependent protease HslV	protease	NA	NA	NA	NA
VDZ37834.1|1256378_1257782_+	ATP-dependent endopeptidase hsl ATP-binding subunit	NA	A0A1B2IDZ7	Erwinia_phage	25.6	6.4e-27
VDZ37835.1|1257806_1258580_+	GTP-sensing transcriptional pleiotropic repressor codY	NA	NA	NA	NA	NA
VDZ37836.1|1258921_1259689_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
VDZ37837.1|1259870_1260752_+	Translation elongation factor Ts	NA	NA	NA	NA	NA
VDZ37838.1|1260888_1261611_+	Uridylate kinase	NA	NA	NA	NA	NA
VDZ37839.1|1261629_1262184_+	Ribosome recycling factor	NA	NA	NA	NA	NA
VDZ37840.1|1262556_1263327_+	Undecaprenyl pyrophosphate synthetase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
VDZ37841.1|1263333_1264116_+	Phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
VDZ37842.1|1264327_1265614_+|protease	Membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
VDZ37843.1|1265633_1267337_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VDZ37844.1|1267594_1271911_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
VDZ37845.1|1272200_1272668_+	Putative cytosolic protein	NA	NA	NA	NA	NA
VDZ37846.1|1272688_1273864_+	Transcription termination protein NusA	NA	NA	NA	NA	NA
VDZ37847.1|1273884_1274169_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA	NA
VDZ37848.1|1274165_1274483_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA	NA
VDZ37849.1|1274487_1276605_+	protein translation initiation factor 2 (IF-2)	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
VDZ37850.1|1276991_1277342_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VDZ37851.1|1277511_1278429_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VDZ37852.1|1278443_1279415_+	Riboflavin kinase / FMN adenylyltransferase	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
VDZ37853.1|1279529_1279799_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
VDZ37854.1|1282499_1284173_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
VDZ37855.1|1284429_1286799_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	7.3e-84
VDZ37856.1|1286803_1287517_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VDZ37857.1|1287547_1288813_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
VDZ37858.1|1288812_1290099_+	peptidase, M16 family	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
VDZ37859.1|1290098_1290803_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA	NA
VDZ37860.1|1290907_1291735_+	protein with ACT domain	NA	NA	NA	NA	NA
VDZ37861.1|1291753_1292146_+	DNA-binding protein	NA	NA	NA	NA	NA
VDZ37862.1|1292179_1292758_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
VDZ37863.1|1292982_1294134_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
VDZ37864.1|1294298_1295342_+	recombinase A	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
VDZ37865.1|1295695_1297255_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VDZ37866.1|1297550_1297766_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37867.1|1297939_1298737_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
VDZ37868.1|1298876_1300637_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
VDZ37869.1|1300637_1301504_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
VDZ37870.1|1301598_1301892_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VDZ37871.1|1302025_1303570_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
VDZ37872.1|1303570_1303936_+	membrane protein	NA	NA	NA	NA	NA
VDZ37873.1|1303962_1304454_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
VDZ37874.1|1304756_1307375_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
VDZ37875.1|1307387_1309397_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
VDZ37876.1|1309411_1309945_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
VDZ37877.1|1310419_1311238_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
VDZ37878.1|1311367_1312864_+	glycerol kinase	NA	NA	NA	NA	NA
VDZ37879.1|1313021_1314695_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
VDZ37880.1|1314841_1315759_+	hydrolase	NA	NA	NA	NA	NA
VDZ37881.1|1315776_1316712_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
VDZ37882.1|1316726_1316960_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
VDZ37883.1|1317181_1317658_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
VDZ37884.1|1317769_1319008_+	GTP-binding protein	NA	NA	NA	NA	NA
VDZ37885.1|1319026_1320265_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
VDZ37886.1|1320508_1320877_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
VDZ37887.1|1320895_1322236_+	glutamine synthetase	NA	NA	NA	NA	NA
VDZ37888.1|1323218_1323572_-|transposase	putative transposase	transposase	Q9MBM9	Staphylococcus_prophage	46.6	1.1e-17
VDZ37889.1|1323735_1324239_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VDZ37890.1|1324347_1324704_-	lipoprotein	NA	NA	NA	NA	NA
VDZ37891.1|1324759_1325350_-	transposon-related protein	NA	NA	NA	NA	NA
VDZ37892.1|1325356_1326403_-|lysis	putative cell wall lysis protein	lysis	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
>prophage 8
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	1339303	1371887	2838411	head,protease,transposase	Staphylococcus_phage(20.0%)	40	NA	NA
VDZ37907.1|1339303_1340251_-|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
VDZ37908.1|1340677_1341094_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37909.1|1342614_1342866_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37910.1|1343070_1343592_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MF61	Staphylococcus_phage	51.1	3.1e-43
VDZ37911.1|1343593_1343791_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37912.1|1343950_1344535_+|head	SPP1 gp7 family Phage head morphogenesis protein	head	NA	NA	NA	NA
VDZ37913.1|1344560_1344659_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37914.1|1344861_1345059_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MFV1	Staphylococcus_phage	61.5	2.3e-15
VDZ37915.1|1345387_1345582_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37916.1|1345794_1346028_+|head	putative phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	76.9	2.1e-12
VDZ37917.1|1346212_1346326_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37918.1|1346338_1346587_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37919.1|1346737_1347016_+|head	SPP1 gp7 family Phage head morphogenesis protein	head	NA	NA	NA	NA
VDZ37920.1|1347061_1347328_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	NA	NA	NA	NA
VDZ37921.1|1347336_1347462_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37922.1|1347871_1348069_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37923.1|1348615_1349641_-	Low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
VDZ37924.1|1349910_1350108_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37925.1|1350164_1351646_+	Cardiolipin synthase	NA	NA	NA	NA	NA
VDZ37926.1|1351828_1352728_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	9.7e-21
VDZ37927.1|1352696_1353428_+	ABC transporter permease protein	NA	NA	NA	NA	NA
VDZ37928.1|1353431_1354523_+	sensor kinase	NA	NA	NA	NA	NA
VDZ37929.1|1354519_1355122_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VDZ37930.1|1355234_1355423_-	membrane protein	NA	NA	NA	NA	NA
VDZ37931.1|1355561_1356095_+	Thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
VDZ37932.1|1356237_1357092_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37933.1|1357413_1357998_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37934.1|1358051_1359434_-	aspartate kinase	NA	NA	NA	NA	NA
VDZ37935.1|1359624_1360905_+	Homoserine dehydrogenase	NA	NA	NA	NA	NA
VDZ37936.1|1360910_1361972_+	Threonine synthase	NA	NA	NA	NA	NA
VDZ37937.1|1361973_1362888_+	Homoserine kinase	NA	NA	NA	NA	NA
VDZ37938.1|1362945_1363749_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VDZ37939.1|1364040_1364355_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ37940.1|1364573_1366028_-	gamma-aminobutyrate permease	NA	NA	NA	NA	NA
VDZ37941.1|1366231_1367749_+	Catalase	NA	A0A2K9L0T1	Tupanvirus	43.8	2.7e-92
VDZ37942.1|1367839_1367989_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
VDZ37943.1|1368442_1368712_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
VDZ37944.1|1368868_1369846_+	putative GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
VDZ37945.1|1370020_1370884_+	SCP family extracellular protein	NA	U5Q0C0	Bacillus_phage	41.5	1.2e-15
VDZ37946.1|1371263_1371887_-|protease	SOS-response repressor and protease LexA	protease	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
>prophage 9
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	1625011	1633323	2838411	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
VDZ38155.1|1625011_1625797_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
VDZ38156.1|1625922_1626813_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
VDZ38157.1|1626822_1628169_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
VDZ38158.1|1628282_1629383_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
VDZ38159.1|1629385_1630063_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VDZ38160.1|1630193_1631300_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
VDZ38161.1|1631523_1633323_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 10
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	1702759	1711802	2838411	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VDZ38233.1|1702759_1703278_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
VDZ38234.1|1703299_1705573_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
VDZ38235.1|1705775_1708055_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
VDZ38236.1|1708329_1708590_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
VDZ38237.1|1708608_1709748_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
VDZ38238.1|1709770_1710796_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VDZ38239.1|1710797_1711802_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	1844352	1910300	2838411	tRNA,protease,transposase	Staphylococcus_phage(93.48%)	67	NA	NA
VDZ38350.1|1844352_1847964_-	putative surface anchored protein	NA	A0A2H4PQU6	Staphylococcus_phage	93.4	4.9e-265
VDZ38351.1|1848287_1848599_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
VDZ38352.1|1848620_1851038_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
VDZ38353.1|1851326_1852508_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
VDZ38354.1|1852618_1853572_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
VDZ38355.1|1853568_1854132_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
VDZ38356.1|1854250_1854652_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VDZ38357.1|1855224_1856052_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VDZ38358.1|1856285_1857287_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
VDZ38359.1|1857408_1857873_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
VDZ38360.1|1857885_1859067_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
VDZ38361.1|1859077_1859710_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
VDZ38362.1|1859716_1860760_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.9e-195
VDZ38363.1|1861240_1862743_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
VDZ38364.1|1863385_1863700_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
VDZ38365.1|1863699_1864992_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
VDZ38366.1|1865077_1865932_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VDZ38367.1|1866207_1866432_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDZ38368.1|1866630_1867101_+	DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
VDZ38369.1|1867213_1867657_+	comK family protein	NA	NA	NA	NA	NA
VDZ38370.1|1867643_1868087_-	membrane protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
VDZ38371.1|1868384_1869020_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VDZ38372.1|1869186_1869807_+	membrane protein	NA	NA	NA	NA	NA
VDZ38373.1|1870264_1870978_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
VDZ38374.1|1871236_1871539_+	membrane protein	NA	NA	NA	NA	NA
VDZ38375.1|1871793_1872159_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
VDZ38376.1|1872155_1872509_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
VDZ38377.1|1872758_1873592_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
VDZ38378.1|1873803_1874712_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
VDZ38379.1|1874836_1876030_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
VDZ38380.1|1876401_1877994_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
VDZ38381.1|1878286_1879057_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.4e-139
VDZ38382.1|1879037_1879517_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	3.0e-85
VDZ38383.1|1879576_1879834_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
VDZ38384.1|1879830_1880832_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
VDZ38385.1|1880836_1882315_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
VDZ38386.1|1882473_1882956_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	2.8e-75
VDZ38387.1|1883266_1883881_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	3.6e-43
VDZ38388.1|1883961_1884957_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
VDZ38389.1|1885032_1885659_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
VDZ38390.1|1885699_1886044_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
VDZ38391.1|1886141_1886714_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
VDZ38392.1|1886862_1888230_-	FRG domain-containing protein	NA	NA	NA	NA	NA
VDZ38393.1|1888229_1888799_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
VDZ38394.1|1888991_1889438_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VDZ38395.1|1889519_1889744_-|transposase	transposase	transposase	NA	NA	NA	NA
VDZ38396.1|1890382_1890826_-	exported protein	NA	NA	NA	NA	NA
VDZ38397.1|1890825_1891269_-	exported protein	NA	NA	NA	NA	NA
VDZ38398.1|1891268_1891589_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VDZ38399.1|1892235_1894656_+	hyaluronate lyase	NA	NA	NA	NA	NA
VDZ38400.1|1894781_1895159_-	exported protein	NA	NA	NA	NA	NA
VDZ38401.1|1895368_1895818_-	exported protein	NA	NA	NA	NA	NA
VDZ38402.1|1895860_1897471_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ38403.1|1897485_1897785_+	ESAT-6 family protein	NA	NA	NA	NA	NA
VDZ38404.1|1898046_1899864_-	KAP family P-loop domain	NA	NA	NA	NA	NA
VDZ38405.1|1899900_1901055_-	type I restriction modification DNA specificity protein	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
VDZ38406.1|1901047_1902604_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	2.2e-286
VDZ38407.1|1902966_1903686_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
VDZ38408.1|1903855_1904572_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
VDZ38409.1|1904735_1904960_-	serine proteinase	NA	A0A2H4PQN0	Staphylococcus_phage	55.4	3.6e-17
VDZ38410.1|1905109_1905451_-	serine proteinase	NA	A0A2H4PQN5	Staphylococcus_phage	76.9	2.1e-40
VDZ38411.1|1905617_1906334_-|protease	serine protease SplB	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
VDZ38412.1|1906457_1907177_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
VDZ38413.1|1907234_1907399_-	splB protein	NA	A0A2H4PQN0	Staphylococcus_phage	97.7	5.9e-17
VDZ38414.1|1907477_1907723_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ38415.1|1908191_1908707_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ38416.1|1908953_1910300_+	exported protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
>prophage 12
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	1996665	2179167	2838411	tail,tRNA,holin,head,terminase,protease,capsid,transposase,integrase	Staphylococcus_phage(74.78%)	192	1996047:1996069	2132490:2132512
1996047:1996069	attL	TATGTTGGGGCCCCGCCAACTTG	NA	NA	NA	NA
VDZ38494.1|1996665_1998093_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
VDZ38495.1|1998105_1999563_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
VDZ38496.1|1999564_1999867_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
VDZ38497.1|2000233_2001772_+	Sodium/proline symporter	NA	NA	NA	NA	NA
VDZ38498.1|2001860_2003060_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
VDZ38499.1|2003072_2005076_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	35.9	8.3e-113
VDZ38500.1|2005079_2007272_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
VDZ38501.1|2007268_2007961_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
VDZ38502.1|2008143_2008446_-	His repressor	NA	NA	NA	NA	NA
VDZ38503.1|2008554_2009850_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
VDZ38504.1|2010700_2011867_+	Staphopain A precursor	NA	NA	NA	NA	NA
VDZ38505.1|2011897_2012221_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
VDZ38506.1|2012514_2012688_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ38507.1|2012668_2013271_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
VDZ38508.1|2013540_2014362_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
VDZ38509.1|2014354_2015824_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	8.5e-107
VDZ38510.1|2016007_2017084_+	nitric-oxide synthase	NA	NA	NA	NA	NA
VDZ38511.1|2017103_2017898_+	ACT domain protein	NA	NA	NA	NA	NA
VDZ38512.1|2018087_2019650_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
VDZ38513.1|2019854_2020952_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
VDZ38514.1|2021324_2021885_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
VDZ38515.1|2021937_2022867_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
VDZ38516.1|2023283_2024663_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
VDZ38517.1|2024782_2025811_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
VDZ38518.1|2026081_2026483_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
VDZ38519.1|2026539_2026713_-	exported protein	NA	NA	NA	NA	NA
VDZ38520.1|2027091_2028204_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
VDZ38521.1|2028260_2029103_-	exported protein	NA	NA	NA	NA	NA
VDZ38522.1|2029099_2029657_-	Predicted membrane protein	NA	NA	NA	NA	NA
VDZ38523.1|2029716_2030241_-	membrane protein	NA	NA	NA	NA	NA
VDZ38524.1|2030361_2030925_+	Thioredoxin	NA	NA	NA	NA	NA
VDZ38525.1|2030988_2031729_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
VDZ38526.1|2031728_2032601_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
VDZ38527.1|2032597_2033278_-	membrane protein	NA	NA	NA	NA	NA
VDZ38528.1|2033278_2034175_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
VDZ38529.1|2034171_2034552_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VDZ38530.1|2034809_2034986_-	membrane protein	NA	NA	NA	NA	NA
VDZ38531.1|2035525_2036812_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
VDZ38532.1|2037059_2038706_-|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
VDZ38533.1|2039003_2041073_-	MHC class II antigen-like protein	NA	NA	NA	NA	NA
VDZ38534.1|2041458_2041659_+	phospholipase C	NA	A0A1P8L6A7	Staphylococcus_phage	95.4	4.9e-26
VDZ38535.1|2042833_2043184_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
VDZ38536.1|2043869_2044319_+	Chemotaxis-inhibiting protein CHIPS, phage associated	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
VDZ38537.1|2044413_2044710_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
VDZ38538.1|2045398_2045890_-	Staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
VDZ38539.1|2046080_2046836_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
VDZ38540.1|2046847_2047102_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VDZ38541.1|2047598_2048372_-	enterotoxin P, phage associated	NA	A0EX09	Staphylococcus_phage	100.0	2.2e-146
VDZ38542.1|2048930_2049167_-	phage protein	NA	G4KNR3	Staphylococcus_phage	100.0	9.3e-16
VDZ38543.1|2049222_2049510_-	phi PVL ORF 22-like protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
VDZ38544.1|2049556_2049709_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
VDZ38545.1|2049698_2053484_-	phage minor structural protein	NA	A0EX05	Staphylococcus_phage	100.0	0.0e+00
VDZ38546.1|2053499_2054984_-	bacteriophage protein	NA	A0EX04	Staphylococcus_phage	100.0	4.5e-297
VDZ38547.1|2054980_2059510_-|tail	TP901 family phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	100.0	0.0e+00
VDZ38548.1|2059566_2059704_-	phage protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
VDZ38549.1|2059754_2060105_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	99.1	2.3e-58
VDZ38550.1|2060420_2061065_-|tail	phage major tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
VDZ38551.1|2061065_2061473_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
VDZ38552.1|2061469_2061874_-	bacteriophage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
VDZ38553.1|2061870_2062233_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
VDZ38554.1|2062216_2062513_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.6e-47
VDZ38555.1|2062513_2062774_-	Phage protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
VDZ38556.1|2062793_2063939_-|capsid	Phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
VDZ38557.1|2063962_2064700_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
VDZ38558.1|2064683_2065871_-	Portal protein, phage associated	NA	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
VDZ38559.1|2065886_2067548_-|terminase	Phage terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
VDZ38560.1|2067544_2067889_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
VDZ38561.1|2068018_2068318_-	phage-associated homing endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
VDZ38562.1|2068549_2068966_-	phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
VDZ38563.1|2068993_2069194_-	phage protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
VDZ38564.1|2069193_2069343_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
VDZ38565.1|2069339_2069726_-	phage protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
VDZ38566.1|2069722_2069929_-	phage protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
VDZ38567.1|2069965_2070508_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0EWY2	Staphylococcus_phage	100.0	1.1e-96
VDZ38568.1|2070500_2070683_-	Uncharacterised protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
VDZ38569.1|2070672_2070924_-	Phage protein	NA	A0EWY0	Staphylococcus_phage	100.0	1.9e-38
VDZ38570.1|2070916_2071081_-	Uncharacterised protein	NA	A0EWX9	Staphylococcus_phage	100.0	1.7e-24
VDZ38571.1|2071095_2071338_-	phage family protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
VDZ38572.1|2071341_2071710_-	Phage protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
VDZ38573.1|2071822_2072032_-	Phage protein	NA	A0EWX6	Staphylococcus_phage	98.5	3.1e-31
VDZ38574.1|2072040_2072259_-	phage protein	NA	A0A2I6PDG4	Staphylococcus_phage	98.6	1.2e-36
VDZ38575.1|2072265_2073150_-	Phage protein	NA	A0EWX4	Staphylococcus_phage	100.0	5.4e-141
VDZ38576.1|2073179_2073650_-	Single-stranded DNA-binding protein, phage associated	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
VDZ38577.1|2073650_2074136_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
VDZ38578.1|2074348_2075269_-	recombinase, phage RecT family protein	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
VDZ38579.1|2075270_2077214_-	Uncharacterized conserved protein	NA	A0EWX0	Staphylococcus_phage	100.0	0.0e+00
VDZ38580.1|2077222_2077486_-	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
VDZ38581.1|2077494_2077758_-	Putative cytosolic protein	NA	A0EWW8	Staphylococcus_phage	100.0	9.0e-44
VDZ38582.1|2077735_2078062_-	phage protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
VDZ38583.1|2078156_2078318_-	phage protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
VDZ38584.1|2078314_2078635_-	Uncharacterized protein conserved in bacteria	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
VDZ38585.1|2078693_2079326_+	phage protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
VDZ38586.1|2079340_2079481_-	phage protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
VDZ38587.1|2079511_2079709_-	Phage protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
VDZ38588.1|2079724_2080477_-	antirepressor	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
VDZ38589.1|2080527_2080857_+	Phage protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
VDZ38590.1|2080845_2081061_-	phage protein	NA	A0EWV9	Staphylococcus_phage	100.0	6.3e-35
VDZ38591.1|2081076_2081340_-	putative phage transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
VDZ38592.1|2081472_2082186_+	CI-like repressor, phage associated	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
VDZ38593.1|2082201_2083134_+	DNA polymerase III subunit alpha	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
VDZ38594.1|2083139_2083481_+	phage protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
VDZ38595.1|2083684_2083867_+	Putative cytosolic protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
VDZ38596.1|2083966_2084431_+	Uncharacterised protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
VDZ38597.1|2084489_2085527_+	DNA integration/recombination/inversion protein	NA	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
VDZ38598.1|2085567_2086410_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	99.3	2.8e-155
VDZ38599.1|2086666_2087686_-	leukocidin-protein 1	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
VDZ38600.1|2087707_2088763_-	Leukocidin S subunit	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
VDZ38601.1|2089194_2090418_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
VDZ38602.1|2090856_2092164_+	Na+-transporting ATP synthase	NA	NA	NA	NA	NA
VDZ38603.1|2092741_2093083_-	phage protein	NA	C8CH40	Staphylococcus_phage	46.0	4.1e-20
VDZ38604.1|2093072_2093369_-	Phage protein	NA	C8CH40	Staphylococcus_phage	40.4	6.7e-11
VDZ38605.1|2093365_2093545_-	mobile element-associated protein	NA	NA	NA	NA	NA
VDZ38606.1|2094663_2095599_+	Exfoliative toxin A/B	NA	NA	NA	NA	NA
VDZ38607.1|2096453_2096681_-	pathogenicity island protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	47.4	1.9e-13
VDZ38608.1|2097099_2097804_+	toxic shock syndrome toxin-1	NA	NA	NA	NA	NA
VDZ38609.1|2097958_2098528_-|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
VDZ38610.1|2098524_2098866_-|transposase	transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
VDZ38611.1|2098868_2099396_-	pathogenicity island protein	NA	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
VDZ38612.1|2099446_2099665_-	hypothetical mobile element-associated protein	NA	NA	NA	NA	NA
VDZ38613.1|2099682_2100261_-|transposase	transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
VDZ38614.1|2100272_2100614_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	98.2	7.1e-57
VDZ38615.1|2101149_2101791_-|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	94.8	3.5e-113
VDZ38616.1|2101787_2102168_-	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	100.0	6.9e-69
VDZ38617.1|2102479_2104189_-	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	100.0	0.0e+00
VDZ38618.1|2104202_2105072_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	99.3	6.0e-169
VDZ38619.1|2105135_2105453_-	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	1.6e-18
VDZ38620.1|2105453_2105837_-	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
VDZ38621.1|2105838_2106042_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
VDZ38622.1|2106026_2106182_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VDZ38623.1|2106178_2106496_-	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
VDZ38624.1|2106500_2106719_-	mobile element-associated transcriptional regulator, putative	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
VDZ38625.1|2106891_2107566_+	mobile element-associated transcriptional regulator, putative	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
VDZ38626.1|2107579_2108752_+|integrase	mobile element-associated integrase, putative	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	3.5e-220
VDZ38627.1|2108820_2110437_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
VDZ38628.1|2110512_2110797_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
VDZ38629.1|2110971_2111715_+	abortive infection protein	NA	NA	NA	NA	NA
VDZ38630.1|2111739_2112954_-	membrane anchored protein	NA	NA	NA	NA	NA
VDZ38631.1|2113150_2113777_+	nitroreductase family protein	NA	NA	NA	NA	NA
VDZ38632.1|2114137_2114923_+	Aliphatic amidase amiE	NA	NA	NA	NA	NA
VDZ38633.1|2115255_2116044_-	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.8	5.1e-50
VDZ38634.1|2116067_2116796_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.8	4.5e-24
VDZ38635.1|2117504_2118122_+	accessory gene regulator protein B	NA	NA	NA	NA	NA
VDZ38636.1|2118125_2118266_+	AgrD protein	NA	NA	NA	NA	NA
VDZ38637.1|2118290_2119583_+	AgrC protein	NA	NA	NA	NA	NA
VDZ38638.1|2119601_2120318_+	accessory gene regulator protein A	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
VDZ38639.1|2120691_2121651_-	Fructokinase	NA	NA	NA	NA	NA
VDZ38640.1|2121647_2123141_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	5.2e-19
VDZ38641.1|2123280_2124231_-	Sucrose operon repressor ScrR, LacI family	NA	NA	NA	NA	NA
VDZ38642.1|2124414_2125665_-	ammonium transporter family protein	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	9.0e-41
VDZ38643.1|2125873_2126098_-	transcriptional regulator	NA	NA	NA	NA	NA
VDZ38644.1|2126157_2127237_-	putative transport system permease protein	NA	NA	NA	NA	NA
VDZ38645.1|2127542_2128178_-	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NA	NA	NA	NA	NA
VDZ38646.1|2128430_2130359_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	29.9	9.3e-53
VDZ38647.1|2130726_2132337_+	MutS-related protein, family 1	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	5.1e-20
VDZ38648.1|2132650_2133676_-|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
2132490:2132512	attR	CAAGTTGGCGGGGCCCCAACATA	NA	NA	NA	NA
VDZ38649.1|2133668_2134133_-	Ribosomal-protein-S18p-alanine acetyltransferase	NA	NA	NA	NA	NA
VDZ38650.1|2134105_2134768_-|protease	Inactive protein of metal-dependent protease family, putative molecular chaperone	protease	NA	NA	NA	NA
VDZ38651.1|2134748_2135243_-	ATP/GTP hydrolase	NA	NA	NA	NA	NA
VDZ38652.1|2135720_2137409_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
VDZ38653.1|2137436_2139206_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	4.1e-63
VDZ38654.1|2139205_2139460_+	Acetolactate synthase small subunit	NA	NA	NA	NA	NA
VDZ38655.1|2139596_2140601_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VDZ38656.1|2140630_2142160_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.6	9.4e-08
VDZ38657.1|2142162_2143209_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VDZ38658.1|2143222_2144593_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
VDZ38659.1|2144593_2145166_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
VDZ38660.1|2145180_2146449_+	Threonine dehydratase	NA	NA	NA	NA	NA
VDZ38661.1|2146525_2146942_-	exported protein	NA	NA	NA	NA	NA
VDZ38662.1|2153240_2153696_-	Metallopeptidase, SprT family	NA	NA	NA	NA	NA
VDZ38663.1|2153688_2155827_-	Transcription accessory protein (S1 RNA-binding domain)	NA	NA	NA	NA	NA
VDZ38664.1|2156273_2157044_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
VDZ38665.1|2157018_2157498_-	anti-sigma B factor	NA	NA	NA	NA	NA
VDZ38666.1|2157499_2157826_-	anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV	NA	NA	NA	NA	NA
VDZ38667.1|2157944_2158946_-	RsbU	NA	NA	NA	NA	NA
VDZ38668.1|2159294_2159657_-	Programmed cell death toxin YdcE	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
VDZ38669.1|2159653_2159824_-	Programmed cell death antitoxin YdcD	NA	NA	NA	NA	NA
VDZ38670.1|2159908_2161057_-	alanine racemase	NA	NA	NA	NA	NA
VDZ38671.1|2161122_2161482_-	Holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
VDZ38672.1|2161485_2161980_-	membrane spanning protein	NA	NA	NA	NA	NA
VDZ38673.1|2161969_2163547_-	Putative membrane spanning protein	NA	NA	NA	NA	NA
VDZ38674.1|2163539_2164019_-	membrane protein	NA	NA	NA	NA	NA
VDZ38675.1|2164227_2164788_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
VDZ38676.1|2164807_2166835_-	potassium-transporting ATPase subunit B 2	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	3.9e-25
VDZ38677.1|2166853_2168530_-	potassium-transporting ATPase subunit A	NA	NA	NA	NA	NA
VDZ38678.1|2168801_2171459_+	KdpD	NA	NA	NA	NA	NA
VDZ38679.1|2171458_2172154_+	DNA-binding response regulator KdpE	NA	NA	NA	NA	NA
VDZ38680.1|2172509_2174030_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
VDZ38681.1|2174544_2175903_-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase	NA	NA	NA	NA	NA
VDZ38682.1|2175917_2176988_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
VDZ38683.1|2177305_2178508_+	Cell division protein FtsW	NA	NA	NA	NA	NA
VDZ38684.1|2178668_2178845_-|transposase	putative transposase	transposase	Q9MBP7	Staphylococcus_prophage	87.9	3.6e-20
VDZ38685.1|2178867_2179167_-|transposase	transposase DDE domain protein	transposase	A0A146ICT8	Staphylococcus_phage	96.9	6.7e-51
>prophage 13
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	2838411	2539975	2581385	2838411	holin,transposase	Staphylococcus_prophage(14.29%)	34	NA	NA
VDZ39040.1|2539975_2540923_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
VDZ39041.1|2541158_2543237_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
VDZ39042.1|2543376_2545206_-	Amino acid permease	NA	NA	NA	NA	NA
VDZ39043.1|2545437_2546937_+	flp protein	NA	NA	NA	NA	NA
VDZ39044.1|2547043_2547895_-	putative NAD-dependent epimerase/dehydratase	NA	NA	NA	NA	NA
VDZ39045.1|2548216_2549152_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VDZ39046.1|2549377_2550778_-	integral membrane efflux protein	NA	NA	NA	NA	NA
VDZ39047.1|2551071_2551767_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
VDZ39048.1|2551766_2552708_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
VDZ39049.1|2552724_2553360_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VDZ39050.1|2553356_2554583_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
VDZ39051.1|2555252_2555852_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
VDZ39052.1|2556032_2557670_+	Amino acid permease	NA	NA	NA	NA	NA
VDZ39053.1|2557976_2559329_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	3.0e-13
VDZ39054.1|2559390_2560578_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
VDZ39055.1|2560971_2561748_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VDZ39056.1|2561740_2562403_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	W8CYL7	Bacillus_phage	34.5	2.2e-17
VDZ39057.1|2562748_2563825_-	endoglucanase M	NA	NA	NA	NA	NA
VDZ39058.1|2564062_2564518_+	lipoprotein	NA	NA	NA	NA	NA
VDZ39059.1|2564685_2566263_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
VDZ39060.1|2566458_2567208_+	membrane protein	NA	NA	NA	NA	NA
VDZ39061.1|2567431_2568625_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
VDZ39062.1|2568636_2569386_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
VDZ39063.1|2569378_2570194_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	29.8	6.1e-14
VDZ39064.1|2570190_2571060_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ39065.1|2571056_2571992_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ39066.1|2572004_2573603_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
VDZ39067.1|2573745_2575047_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ39068.1|2575039_2575858_-	nicotianamine synthase	NA	NA	NA	NA	NA
VDZ39069.1|2575868_2576690_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
VDZ39070.1|2577391_2578159_-	beta-lactamase	NA	NA	NA	NA	NA
VDZ39071.1|2578259_2579078_-	short chain dehydrogenase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	1.9e-10
VDZ39072.1|2579312_2580851_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
VDZ39073.1|2580962_2581385_-|transposase	transposase	transposase	NA	NA	NA	NA
