assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	1	735671-735770	1	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	AAGATCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA,NA|230aa|down_1|LR134090.1_737591_738281_-,NA|124aa|down_3|LR134090.1_738918_739290_+,NA|100aa|down_4|LR134090.1_739427_739727_+	NA|206aa|up_9|LR134090.1_724847_725465_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|LR134090.1_725480_726488_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|LR134090.1_727072_727870_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|LR134090.1_728230_728875_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|LR134090.1_729570_731721_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_4|LR134090.1_731800_732226_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|LR134090.1_732415_733132_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_2|LR134090.1_733131_733605_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_1|LR134090.1_733957_734602_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|LR134090.1_734717_735584_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|163aa|down_0|LR134090.1_737004_737493_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_1|LR134090.1_737591_738281_-	NA	NA|148aa|down_2|LR134090.1_738407_738851_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|124aa|down_3|LR134090.1_738918_739290_+	NA	NA|100aa|down_4|LR134090.1_739427_739727_+	NA	NA|181aa|down_5|LR134090.1_739806_740349_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_6|LR134090.1_740443_741010_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_7|LR134090.1_741011_741470_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_8|LR134090.1_741472_742156_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|292aa|down_9|LR134090.1_742326_743202_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	3	928085-928166	2	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	CAATTTCTACAGGCAATGCAAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA,NA	NA|499aa|up_9|LR134090.1_916970_918467_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|LR134090.1_918459_918801_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|LR134090.1_918800_919229_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|LR134090.1_919221_921627_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|LR134090.1_921757_922141_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|LR134090.1_922204_922798_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|LR134090.1_923213_923591_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|LR134090.1_923951_925079_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|LR134090.1_925386_926577_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|LR134090.1_926685_927930_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|LR134090.1_928323_929253_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|LR134090.1_929494_930874_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|LR134090.1_930863_932069_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|LR134090.1_932418_933750_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|LR134090.1_934621_935197_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|LR134090.1_935201_935726_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|LR134090.1_935741_936317_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|LR134090.1_936476_939953_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|LR134090.1_939953_943607_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|LR134090.1_943772_944675_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	5	1060419-1060515	4	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	GCATAAAAGCCCCTAACAACTAAAAGTTGTAAGG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA,NA|45aa|down_0|LR134090.1_1060524_1060659_-,NA|432aa|down_1|LR134090.1_1060810_1062106_+	NA|224aa|up_9|LR134090.1_1048216_1048888_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|LR134090.1_1048880_1051070_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|LR134090.1_1051048_1052533_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|LR134090.1_1052525_1053554_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|LR134090.1_1053556_1054123_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|LR134090.1_1054137_1055616_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|LR134090.1_1055637_1056885_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|LR134090.1_1057150_1057957_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|LR134090.1_1057949_1059350_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|LR134090.1_1059365_1059941_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|LR134090.1_1060524_1060659_-	NA	NA|432aa|down_1|LR134090.1_1060810_1062106_+	NA	NA|391aa|down_2|LR134090.1_1062529_1063702_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|LR134090.1_1063755_1064298_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|LR134090.1_1064451_1064718_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|LR134090.1_1064720_1066439_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|LR134090.1_1066673_1066907_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|LR134090.1_1067104_1068466_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|LR134090.1_1068462_1069482_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|LR134090.1_1069614_1070277_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	6	1949187-1949269	5	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	CAACATAGTGAAATTGGATCCTCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA|132aa|up_0|LR134090.1_1948440_1948836_-,NA|51aa|down_0|LR134090.1_1949578_1949731_-	NA|979aa|up_9|LR134090.1_1935931_1938868_-	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|399aa|up_8|LR134090.1_1938857_1940054_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|115aa|up_7|LR134090.1_1941131_1941476_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|375aa|up_6|LR134090.1_1941544_1942669_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_5|LR134090.1_1942847_1943312_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|208aa|up_4|LR134090.1_1943667_1944291_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|371aa|up_3|LR134090.1_1944312_1945425_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_2|LR134090.1_1945587_1946409_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_1|LR134090.1_1946859_1948245_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_0|LR134090.1_1948440_1948836_-	NA	NA|51aa|down_0|LR134090.1_1949578_1949731_-	NA	NA|200aa|down_1|LR134090.1_1949755_1950355_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|down_2|LR134090.1_1950513_1950984_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|down_3|LR134090.1_1950988_1952116_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|down_4|LR134090.1_1952266_1952995_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|down_5|LR134090.1_1952981_1954439_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|down_6|LR134090.1_1954696_1955758_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_7|LR134090.1_1964539_1964986_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|320aa|down_8|LR134090.1_1965082_1966042_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_9|LR134090.1_1966038_1966494_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	7	2244840-2244929	6	CRISPRCasFinder	no	csa3	cas3,csa3,DinG,DEDDh,WYL	Type I-A	TTACAACTTTAGTTGTTAGGGGCTCTTATGCA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA|77aa|up_5|LR134090.1_2239714_2239945_-,NA|364aa|up_0|LR134090.1_2243734_2244826_+,NA|236aa|down_0|LR134090.1_2246125_2246833_-,NA|43aa|down_1|LR134090.1_2247117_2247246_-	NA|237aa|up_9|LR134090.1_2235322_2236033_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LR134090.1_2236153_2236597_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LR134090.1_2236796_2237210_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LR134090.1_2237667_2239041_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LR134090.1_2239714_2239945_-	NA	NA|313aa|up_4|LR134090.1_2239975_2240914_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LR134090.1_2241349_2242015_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LR134090.1_2242166_2242487_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LR134090.1_2242488_2243469_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LR134090.1_2243734_2244826_+	NA	NA|236aa|down_0|LR134090.1_2246125_2246833_-	NA	NA|43aa|down_1|LR134090.1_2247117_2247246_-	NA	NA|286aa|down_2|LR134090.1_2248294_2249152_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|LR134090.1_2249219_2250002_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|642aa|down_4|LR134090.1_2250480_2252406_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|668aa|down_5|LR134090.1_2252398_2254402_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|602aa|down_6|LR134090.1_2254553_2256359_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|LR134090.1_2257039_2258578_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|LR134090.1_2258612_2260745_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|LR134090.1_2260756_2261191_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	8	2366144-2366362	1	CRT	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	GTTGGGGCCCCGTTCCCCAACTTGCACATTATTGTAAGCTG	41	3	12	2366185-2366202|2366244-2366261|2366244-2366261|2366244-2366261|2366244-2366261|2366244-2366261|2366244-2366261|2366244-2366261|2366244-2366261|2366303-2366321|2366303-2366321|2366303-2366321	LR134090.1_891674-891657|LR134090.1_802220-802203|LR134090.1_1787420-1787437|LR134090.1_2505970-2505953|LR134090.1_1138487-1138504|LR134090.1_467503-467486|LR134090.1_679139-679156|LR134090.1_1193613-1193630|LR134090.1_2000892-2000909|LR134090.1_1281982-1281964|LR134090.1_1529412-1529394|LR134090.1_1787307-1787325	NA	3	3	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA|55aa|up_8|LR134090.1_2356679_2356844_+,NA|106aa|up_7|LR134090.1_2357078_2357396_+,NA|84aa|up_4|LR134090.1_2362520_2362772_+,NA	NA|303aa|up_9|LR134090.1_2355638_2356547_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|LR134090.1_2356679_2356844_+	NA	NA|106aa|up_7|LR134090.1_2357078_2357396_+	NA	NA|1056aa|up_6|LR134090.1_2357582_2360750_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|LR134090.1_2360866_2362132_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|LR134090.1_2362520_2362772_+	NA	NA|255aa|up_3|LR134090.1_2362763_2363528_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|LR134090.1_2363690_2364131_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|LR134090.1_2364123_2365335_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|LR134090.1_2365436_2365787_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|LR134090.1_2366544_2367567_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|LR134090.1_2367586_2368186_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|LR134090.1_2368192_2368426_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|LR134090.1_2368431_2368878_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|LR134090.1_2368891_2369377_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|LR134090.1_2369373_2370633_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|LR134090.1_2370695_2371190_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|LR134090.1_2371191_2371698_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|LR134090.1_2371728_2372733_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|LR134090.1_2372901_2373507_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	9	2580334-2580429	7	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	CAACTGTATTCCTCTATACCTGTAATTTT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA|250aa|up_9|LR134090.1_2570020_2570770_+,NA|121aa|down_0|LR134090.1_2581192_2581555_-,NA|64aa|down_7|LR134090.1_2587606_2587798_-,NA|98aa|down_8|LR134090.1_2588151_2588445_-,NA|109aa|down_9|LR134090.1_2588447_2588774_-	NA|250aa|up_9|LR134090.1_2570020_2570770_+	NA	NA|398aa|up_8|LR134090.1_2570993_2572187_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|LR134090.1_2572198_2572948_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|LR134090.1_2572940_2573756_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|LR134090.1_2573752_2574622_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|LR134090.1_2574618_2575554_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|LR134090.1_2575566_2577165_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|LR134090.1_2577307_2578609_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|LR134090.1_2578601_2579420_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|LR134090.1_2579430_2580252_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|LR134090.1_2581192_2581555_-	NA	NA|273aa|down_1|LR134090.1_2581818_2582637_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|LR134090.1_2582872_2584411_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|LR134090.1_2584522_2584945_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|140aa|down_4|LR134090.1_2585400_2585820_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|232aa|down_5|LR134090.1_2586070_2586766_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|94aa|down_6|LR134090.1_2587065_2587347_+	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|64aa|down_7|LR134090.1_2587606_2587798_-	NA	NA|98aa|down_8|LR134090.1_2588151_2588445_-	NA	NA|109aa|down_9|LR134090.1_2588447_2588774_-	NA
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	10	2807623-2807701	8	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	TTCTCTATGTTGGGGCCCCGCCAA	24	1	18	2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677|2807647-2807677	LR134090.1_637478-637448|LR134090.1_834748-834778|LR134090.1_834806-834836|LR134090.1_1044274-1044304|LR134090.1_1502545-1502515|LR134090.1_1502602-1502572|LR134090.1_1502660-1502630|LR134090.1_1578048-1578078|LR134090.1_2381670-2381640|LR134090.1_2400806-2400776|LR134090.1_2837062-2837092|LR134090.1_882951-882921|LR134090.1_1301630-1301660|LR134090.1_2837120-2837150|LR134090.1_550334-550304|LR134090.1_948232-948262|LR134090.1_1193592-1193622|LR134090.1_1282058-1282028	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA,NA|88aa|down_1|LR134090.1_2810561_2810825_-	NA|159aa|up_9|LR134090.1_2799071_2799548_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|up_8|LR134090.1_2799550_2800051_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_7|LR134090.1_2800285_2801053_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_6|LR134090.1_2801049_2801742_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_5|LR134090.1_2801758_2802421_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_4|LR134090.1_2803268_2803829_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|413aa|up_3|LR134090.1_2803992_2805231_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|up_2|LR134090.1_2805194_2805500_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|291aa|up_1|LR134090.1_2805496_2806369_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|up_0|LR134090.1_2806355_2807408_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|682aa|down_0|LR134090.1_2807798_2809844_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|88aa|down_1|LR134090.1_2810561_2810825_-	NA	NA|211aa|down_2|LR134090.1_2811361_2811994_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_3|LR134090.1_2811990_2812749_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_4|LR134090.1_2812745_2813450_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_5|LR134090.1_2813442_2814021_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|193aa|down_6|LR134090.1_2814017_2814596_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|338aa|down_7|LR134090.1_2814564_2815578_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|417aa|down_8|LR134090.1_2815593_2816844_-	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|205aa|down_9|LR134090.1_2816836_2817451_-	PRK13584, hisG, ATP phosphoribosyltransferase
GCA_900635315.1_41255_H01	LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	11	2836943-2837028	9	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	8	2836973-2836998|2836973-2836998|2836973-2836998|2836973-2836998|2836973-2836998|2836973-2836998|2836973-2836998|2836973-2836998	LR134090.1_637508-637483|LR134090.1_1301598-1301623|LR134090.1_2400951-2400926|LR134090.1_2200317-2200292|LR134090.1_1281954-1281929|LR134090.1_1281977-1281952|LR134090.1_2400895-2400870|LR134090.1_2535312-2535337	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL	NA|64aa|up_3|LR134090.1_2834162_2834354_+,NA	NA|192aa|up_9|LR134090.1_2827533_2828109_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|339aa|up_8|LR134090.1_2828273_2829290_+	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|271aa|up_7|LR134090.1_2829532_2830345_+	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|171aa|up_6|LR134090.1_2830640_2831153_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_5|LR134090.1_2831442_2832201_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_4|LR134090.1_2832190_2834071_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_3|LR134090.1_2834162_2834354_+	NA	NA|190aa|up_2|LR134090.1_2835073_2835643_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|LR134090.1_2835902_2836298_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|LR134090.1_2836365_2836719_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|LR134090.1_2837386_2838226_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|LR134090.1_2838268_2838988_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|LR134090.1_2838987_2840865_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|LR134090.1_2840931_2842311_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|116aa|down_4|LR134090.1_2842453_2842801_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|LR134090.1_2842927_2843065_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
