The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	277077	314813	2750532	holin,lysis,transposase	Enterobacteria_phage(20.0%)	35	NA	NA
VDZ11034.1|277077_278832_+|lysis	Autolysis histidine kinase LytS	lysis	Q9EYF3	Enterobacteria_phage	31.5	6.9e-63
VDZ11035.1|278834_279026_+|lysis	Autolysis response regulater LytR	lysis	NA	NA	NA	NA
VDZ11036.1|279043_279160_+|lysis	Autolysis response regulater LytR	lysis	NA	NA	NA	NA
VDZ11037.1|279230_279575_+|lysis	Autolysis response regulater LytR	lysis	NA	NA	NA	NA
VDZ11038.1|279693_280131_+|holin	holin-like protein	holin	NA	NA	NA	NA
VDZ11039.1|280123_280825_+	LrgA-associated membrane protein LrgB	NA	NA	NA	NA	NA
VDZ11040.1|281165_283457_+	nitric oxide reductase	NA	NA	NA	NA	NA
VDZ11041.1|283682_284387_-	Transcriptional regulator, GntR family	NA	NA	NA	NA	NA
VDZ11042.1|284533_285325_+	PTS family glucose/glucoside (glc) porter component IIABC	NA	NA	NA	NA	NA
VDZ11043.1|285340_286777_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	4.8e-30
VDZ11044.1|286840_287146_+	nitrogen regulation protein NIFR3	NA	NA	NA	NA	NA
VDZ11045.1|287405_288167_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
VDZ11046.1|288417_289332_-	Ribokinase	NA	NA	NA	NA	NA
VDZ11047.1|289359_289764_-	Ribose ABC transport system, high affinity permease RbsD	NA	NA	NA	NA	NA
VDZ11048.1|289778_290660_-	sugar transport protein	NA	NA	NA	NA	NA
VDZ11049.1|290891_291890_-	ribose operon repressor, putative	NA	NA	NA	NA	NA
VDZ11050.1|292270_292663_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ11051.1|292791_294168_-	multidrug resistance protein B	NA	NA	NA	NA	NA
VDZ11052.1|294401_295394_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
VDZ11053.1|295720_296671_+	peptidoglycan hydrolase	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
VDZ11054.1|296741_297383_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.4e-23
VDZ11055.1|297396_298317_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
VDZ11056.1|298313_299480_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
VDZ11057.1|299547_301071_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ11058.1|301400_302303_-	staphyloxanthin biosynthesis protein, putative	NA	NA	NA	NA	NA
VDZ11059.1|302541_302835_+	Virulence factor esxA	NA	NA	NA	NA	NA
VDZ11060.1|302917_305947_+	Putative secretion accessory protein EsaA/YueB	NA	NA	NA	NA	NA
VDZ11061.1|305946_306405_+	Putative secretion system component EssA	NA	NA	NA	NA	NA
VDZ11062.1|306376_306619_+	Putative secretion accessory protein EsaB/YukD	NA	NA	NA	NA	NA
VDZ11063.1|306631_307966_+	essB	NA	NA	NA	NA	NA
VDZ11064.1|307987_311533_+	essC	NA	V5UPA0	Mycobacterium_phage	23.6	1.7e-28
VDZ11065.1|311562_312435_+	essC	NA	NA	NA	NA	NA
VDZ11066.1|312434_312704_+	type VII secretion effector	NA	NA	NA	NA	NA
VDZ11067.1|312726_312981_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ11068.1|313142_314813_+|transposase	putative transposase	transposase	NA	NA	NA	NA
>prophage 2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	735075	742892	2750532		Hokovirus(16.67%)	11	NA	NA
VDZ11464.1|735075_736131_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VDZ11465.1|736130_736817_-	Response regulator SaeR	NA	NA	NA	NA	NA
VDZ11466.1|736791_737265_-	DoxX family protein	NA	NA	NA	NA	NA
VDZ11467.1|737606_737822_-	lipoprotein	NA	NA	NA	NA	NA
VDZ11468.1|737890_738046_-	lipoprotein	NA	NA	NA	NA	NA
VDZ11469.1|738325_738910_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ11470.1|739008_739722_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
VDZ11471.1|739775_740144_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	5.6e-07
VDZ11472.1|740145_740814_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VDZ11473.1|741163_741757_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
VDZ11474.1|741740_742892_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 3
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	746863	769253	2750532	holin	uncultured_Caudovirales_phage(33.33%)	18	NA	NA
VDZ11482.1|746863_747967_+	glycerol phosphate lipoteichoic acid synthase	NA	W6LM83	Streptococcus_phage	40.8	3.3e-71
VDZ11483.1|748243_748894_+	ABC transporter	NA	A0A2K9L3Z8	Tupanvirus	35.3	2.6e-23
VDZ11484.1|748974_750120_+	ABC transporter	NA	A0A1V0SGN0	Hokovirus	26.8	5.8e-18
VDZ11485.1|750131_751913_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
VDZ11486.1|752134_753112_+	Glycine betaine ABC transport system, ATP-binding protein OpuAA	NA	G3M9Y6	Bacillus_virus	33.8	1.1e-25
VDZ11487.1|753104_754619_+|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VDZ11488.1|754858_755917_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.4	3.9e-21
VDZ11489.1|756267_756816_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VDZ11490.1|757417_758335_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
VDZ11491.1|758617_760123_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VDZ11492.1|760463_760964_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
VDZ11493.1|760983_761850_-	Integral membrane domain protein	NA	NA	NA	NA	NA
VDZ11494.1|762650_763049_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
VDZ11495.1|763011_765117_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
VDZ11496.1|765234_766206_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
VDZ11497.1|766538_767552_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
VDZ11498.1|767538_768495_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	7.2e-06
VDZ11499.1|768491_769253_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 4
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	848764	861607	2750532	terminase,integrase,transposase	Staphylococcus_phage(93.33%)	23	850975:850992	863661:863678
VDZ11579.1|848764_849790_+	Methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.0e-26
VDZ11580.1|849782_850478_+	Methionine ABC transporter permease protein	NA	NA	NA	NA	NA
VDZ11581.1|850495_851317_+	Methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
850975:850992	attL	AAAAATTGAAGATGCTAA	NA	NA	NA	NA
VDZ11582.1|851459_852680_-|integrase	prophage L54a integrase	integrase	Q4ZE80	Staphylococcus_phage	46.8	3.0e-97
VDZ11583.1|852694_853396_-	pathogenicity island DNA-binding protein	NA	Q4ZE79	Staphylococcus_phage	35.3	1.4e-11
VDZ11584.1|853539_853752_+	pathogenicity island protein	NA	Q4ZE78	Staphylococcus_phage	58.6	1.1e-15
VDZ11585.1|853752_854025_+	pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	81.1	1.9e-36
VDZ11586.1|854036_854183_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VDZ11587.1|854175_854388_+	pathogenicity island protein	NA	A0A1W6JPA6	Staphylococcus_phage	67.6	4.4e-17
VDZ11588.1|854389_854548_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ11589.1|854574_854748_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ11590.1|854748_855048_+	mobile element-associated DUF1474-containing protein, putative	NA	A0A1W6JQH0	Staphylococcus_phage	54.4	4.4e-18
VDZ11591.1|855122_856736_+	bacteriophage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.0	1.1e-245
VDZ11592.1|856906_857710_+	pathogenicity island replication protein	NA	Q4ZE69	Staphylococcus_phage	94.4	1.0e-146
VDZ11593.1|857696_857969_+	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	87.8	5.3e-39
VDZ11594.1|857970_858612_+	mobile element-associated protein, putative	NA	Q4ZE67	Staphylococcus_phage	93.0	3.2e-111
VDZ11595.1|858960_859302_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
VDZ11596.1|859315_859549_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ11597.1|859559_859784_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ11598.1|859789_860080_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ11599.1|860169_860697_+	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	94.3	5.1e-86
VDZ11600.1|860699_861041_+|transposase	transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	88.5	2.4e-52
VDZ11601.1|861037_861607_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	97.4	3.9e-100
863661:863678	attR	TTAGCATCTTCAATTTTT	NA	NA	NA	NA
>prophage 5
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	869425	916192	2750532	holin,tail,portal,terminase,head,capsid	Staphylococcus_phage(70.77%)	67	NA	NA
VDZ11614.1|869425_869833_+	Selenocysteine lyase	NA	Q2XUY6	environmental_halophage	46.4	8.8e-30
VDZ11615.1|869868_870666_+	Selenocysteine lyase	NA	Q2XUY6	environmental_halophage	44.4	3.0e-66
VDZ11616.1|870655_871120_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA	NA
VDZ11617.1|871270_872668_+	Scaffold protein sufB	NA	NA	NA	NA	NA
VDZ11618.1|872683_873784_-	Integrase	NA	A0A0H4ISP4	Staphylococcus_phage	100.0	2.6e-201
VDZ11619.1|873894_874095_+	excisionase-like protein	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
VDZ11620.1|874031_874352_-	phage protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.1e-51
VDZ11621.1|874372_874936_-	phage protein	NA	A0A0F6N3N6	Staphylococcus_phage	98.9	5.0e-100
VDZ11622.1|874967_875606_-	phage repressor protein	NA	A0A0E3TAG1	Staphylococcus_phage	99.5	1.3e-115
VDZ11623.1|875797_876052_+	phage DNA-binding protein	NA	B7T095	Staphylococcus_virus	100.0	1.8e-41
VDZ11624.1|876067_876235_+	phage protein	NA	Q4ZA65	Staphylococcus_virus	98.2	9.8e-20
VDZ11625.1|876285_876768_-	phage protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
VDZ11626.1|877213_877399_+	Helix-turn-helix	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
VDZ11627.1|877400_878150_+	putative phage anti-repressor protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	4.4e-136
VDZ11628.1|878165_878381_+	phi PV83 orf 10-like protein	NA	E9LT76	Staphylococcus_phage	98.6	5.0e-32
VDZ11629.1|878336_878582_-	phage protein	NA	E9LT77	Staphylococcus_phage	100.0	6.9e-38
VDZ11630.1|878652_878883_+	phage protein	NA	A0A0H4ISQ0	Staphylococcus_phage	97.3	5.9e-31
VDZ11631.1|878866_879028_+	phage protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
VDZ11632.1|879129_879390_+	phage protein	NA	A1KX65	Staphylococcus_virus	98.8	4.4e-43
VDZ11633.1|879403_879883_+	phage protein	NA	Q4ZCX2	Staphylococcus_virus	97.5	2.6e-81
VDZ11634.1|879882_880521_+	putative phage single-strand DNA binding protein	NA	M9NSS5	Staphylococcus_phage	99.5	2.8e-115
VDZ11635.1|880520_880946_+	Single-stranded DNA-binding protein, phage associated	NA	R4IG44	Staphylococcus_phage	100.0	3.0e-73
VDZ11636.1|880959_881634_+	phage protein	NA	D2JGK3	Staphylococcus_phage	94.2	1.2e-121
VDZ11637.1|881626_882379_+	hypothetical phage-related protein	NA	B7T0A7	Staphylococcus_virus	87.3	1.9e-118
VDZ11638.1|882378_882735_+	phage protein	NA	B7T0A8	Staphylococcus_virus	99.2	6.9e-63
VDZ11639.1|882731_883973_+	prophage L54a, replicative DNA helicase	NA	C8CGZ3	Staphylococcus_phage	99.0	6.3e-228
VDZ11640.1|883969_884185_+	hypothetical phage-related protein	NA	A9CR72	Staphylococcus_phage	97.2	1.8e-34
VDZ11641.1|884187_884409_+	putative phi ETA-like protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
VDZ11642.1|884418_884823_+	hypothetical phage-related protein	NA	Q6R835	Staphylococcus_virus	98.5	4.6e-71
VDZ11643.1|884827_885013_+	Protein of uncharacterised function (DUF3113)	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
VDZ11644.1|885013_885631_+	phage protein	NA	A0A0H3U4U9	Staphylococcus_phage	99.0	1.0e-82
VDZ11645.1|885631_885880_+	phage family protein	NA	A0A2I6PDI0	Staphylococcus_phage	95.1	4.0e-41
VDZ11646.1|885890_886274_+	phage protein	NA	Q4ZDG8	Staphylococcus_virus	56.8	4.0e-32
VDZ11647.1|886270_886465_+	phage protein	NA	Q4ZDX2	Staphylococcus_virus	95.2	6.3e-26
VDZ11648.1|886461_886746_+	phage protein	NA	Q9G014	Staphylococcus_virus	92.6	4.9e-43
VDZ11649.1|886738_886987_+	Phage protein	NA	B7T0H8	Staphylococcus_virus	97.6	1.3e-36
VDZ11650.1|886979_887492_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZDG4	Staphylococcus_virus	97.1	3.4e-87
VDZ11651.1|887528_887735_+	phage protein	NA	A0A059T622	Staphylococcus_phage	98.5	4.9e-21
VDZ11652.1|887731_887905_+	int gene activator RinB	NA	Q4ZBK0	Staphylococcus_phage	98.2	1.9e-21
VDZ11653.1|887905_888052_+	phage protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
VDZ11654.1|888075_888498_+	phage transcriptional activator RinA	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
VDZ11655.1|888829_889324_+	phage protein	NA	A0A059T7P8	Staphylococcus_phage	99.4	1.7e-75
VDZ11656.1|889316_890540_+|terminase	phage terminase, large subunit, PBSX family	terminase	A0A059T7K2	Staphylococcus_phage	99.5	8.3e-241
VDZ11657.1|890542_891961_+|portal	phage portal protein, SPP1 family	portal	A0A0E3T9I6	Staphylococcus_phage	98.5	9.3e-268
VDZ11658.1|891929_892880_+|head	phage minor head protein	head	A0A0H3U2Z4	Staphylococcus_phage	98.1	9.8e-173
VDZ11659.1|892975_893560_+	phage protein	NA	M9NRJ1	Staphylococcus_phage	99.0	2.9e-74
VDZ11660.1|893576_894491_+|capsid	phage major capsid protein, HK97 family	capsid	A0A059T7K3	Staphylococcus_phage	99.3	1.3e-169
VDZ11661.1|894650_895001_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	99.1	3.2e-60
VDZ11662.1|895012_895348_+|head,tail	putative head-tail adaptor	head,tail	Q4ZBR2	Staphylococcus_phage	97.3	2.8e-58
VDZ11663.1|895334_895748_+	phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	98.5	1.2e-74
VDZ11664.1|895760_896186_+	phage protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
VDZ11665.1|896186_896744_+|tail	putative tail protein	tail	A0A059T675	Staphylococcus_phage	100.0	4.1e-102
VDZ11666.1|896810_897323_+	phage protein	NA	A0A059T5B1	Staphylococcus_phage	99.4	2.1e-92
VDZ11667.1|897655_900541_+	phage tape measure protein	NA	M9NRJ5	Staphylococcus_phage	98.9	0.0e+00
VDZ11668.1|900555_901497_+|tail	phage tail family protein	tail	A0A059T7K5	Staphylococcus_phage	99.0	1.4e-179
VDZ11669.1|901507_903394_+	GDSL-like Lipase/Acylhydrolase family protein	NA	A0A059T677	Staphylococcus_phage	98.9	0.0e+00
VDZ11670.1|903406_905305_+	phage protein	NA	Q4ZA90	Staphylococcus_virus	97.9	0.0e+00
VDZ11671.1|905304_907128_+	phiETA ORF57-like protein	NA	A0A059T627	Staphylococcus_phage	97.5	1.9e-310
VDZ11672.1|907127_907514_+	phage protein	NA	M9NRJ7	Staphylococcus_phage	79.0	3.7e-46
VDZ11673.1|907506_907683_+	phage protein	NA	M9QX31	Staphylococcus_phage	88.0	8.8e-19
VDZ11674.1|907722_908028_+	phage protein	NA	A0A059T679	Staphylococcus_phage	97.0	1.7e-41
VDZ11675.1|908164_910039_+	putative cell wall hydrolase	NA	Q4ZA83	Staphylococcus_virus	92.0	0.0e+00
VDZ11676.1|910051_912646_+	phage protein	NA	Q4ZC48	Staphylococcus_virus	57.1	7.9e-273
VDZ11677.1|912701_913139_+|holin	holin, phage phi LC3 family	holin	B7T0F0	Staphylococcus_virus	97.2	5.9e-72
VDZ11678.1|913119_914565_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A059T7Q7	Staphylococcus_phage	99.2	2.2e-293
VDZ11679.1|915463_915643_+	phage protein	NA	M9QYR8	Staphylococcus_phage	100.0	4.1e-24
VDZ11680.1|915664_916192_+	phage protein	NA	M9QX37	Staphylococcus_phage	100.0	3.4e-98
>prophage 6
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	1073472	1081840	2750532		Synechococcus_phage(28.57%)	9	NA	NA
VDZ11835.1|1073472_1074177_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.8e-47
VDZ11836.1|1074176_1074440_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VDZ11837.1|1074441_1075113_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VDZ11838.1|1075105_1075570_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	52.4	3.1e-39
VDZ11839.1|1075668_1077294_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	34.8	4.9e-79
VDZ11840.1|1077272_1078757_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
VDZ11841.1|1078749_1079778_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.2e-61
VDZ11842.1|1079780_1080347_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
VDZ11843.1|1080361_1081840_+	IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	2.4e-77
>prophage 7
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	1611560	1622049	2750532	tRNA	Bacillus_thuringiensis_phage(12.5%)	11	NA	NA
VDZ12342.1|1611560_1612160_-	Manganese superoxide dismutase; Superoxide dismutase (Fe)	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
VDZ12343.1|1612436_1612847_-	Zinc uptake regulation protein ZUR	NA	NA	NA	NA	NA
VDZ12344.1|1612833_1613706_-	ABC transporter permease protein	NA	NA	NA	NA	NA
VDZ12345.1|1613738_1614524_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	1.8e-18
VDZ12346.1|1614649_1615540_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.4e-27
VDZ12347.1|1615549_1616161_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SBR7	Catovirus	36.9	9.2e-15
VDZ12348.1|1616118_1616895_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	33.7	2.5e-33
VDZ12349.1|1617008_1618109_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	2.3e-08
VDZ12350.1|1618111_1618789_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VDZ12351.1|1618919_1620026_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
VDZ12352.1|1620249_1622049_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	4.2e-55
>prophage 8
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	1815738	1899500	2750532	integrase,tRNA,protease,bacteriocin	Staphylococcus_phage(93.33%)	79	1897629:1897643	1899505:1899519
VDZ12538.1|1815738_1816383_-|tRNA	tRNA (guanine46-N7-)-methyltransferase	tRNA	NA	NA	NA	NA
VDZ12539.1|1816397_1817189_-	phosphotransferase enzyme family	NA	NA	NA	NA	NA
VDZ12540.1|1817738_1818587_-	D-alanine aminotransferase	NA	NA	NA	NA	NA
VDZ12541.1|1818590_1820000_-	Xaa-His dipeptidase	NA	NA	NA	NA	NA
VDZ12542.1|1820380_1820470_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ12543.1|1820488_1820911_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDZ12544.1|1820927_1821623_-	16S pseudouridine synthase A	NA	NA	NA	NA	NA
VDZ12545.1|1821619_1823281_-	spore cortex protein; Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	NA	NA	NA	NA	NA
VDZ12546.1|1823687_1824956_+	NAD(FAD)-utilizing dehydrogenase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
VDZ12547.1|1825072_1831630_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	95.4	6.3e-303
VDZ12548.1|1831956_1832268_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	98.1	8.2e-52
VDZ12549.1|1832289_1833174_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	1.7e-166
VDZ12550.1|1833167_1834706_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.4	1.7e-283
VDZ12551.1|1834993_1835677_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	1.0e-118
VDZ12552.1|1835636_1836173_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	97.5	2.6e-85
VDZ12553.1|1836282_1837236_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
VDZ12554.1|1837232_1837796_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
VDZ12555.1|1837915_1838317_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VDZ12556.1|1838888_1839716_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VDZ12557.1|1839949_1840951_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	5.9e-184
VDZ12558.1|1841072_1841537_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
VDZ12559.1|1841549_1841909_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	4.8e-64
VDZ12560.1|1842018_1843371_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.1	4.3e-129
VDZ12561.1|1843377_1844421_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
VDZ12562.1|1844901_1846404_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
VDZ12563.1|1846925_1847240_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	3.1e-51
VDZ12564.1|1847239_1848532_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	97.9	1.5e-224
VDZ12565.1|1848549_1848945_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	98.5	6.9e-72
VDZ12566.1|1849294_1850149_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VDZ12567.1|1850424_1850649_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDZ12568.1|1850847_1851318_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
VDZ12569.1|1851430_1851874_+	comK family protein	NA	NA	NA	NA	NA
VDZ12570.1|1851860_1852304_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	84.4	1.9e-54
VDZ12571.1|1852499_1853237_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VDZ12572.1|1853662_1854376_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
VDZ12573.1|1855189_1855555_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	1.4e-58
VDZ12574.1|1855551_1855905_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
VDZ12575.1|1856154_1856988_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	6.0e-158
VDZ12576.1|1857199_1858108_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
VDZ12577.1|1858232_1859426_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
VDZ12578.1|1859796_1861389_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
VDZ12579.1|1861684_1862455_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	1.6e-141
VDZ12580.1|1862435_1862915_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
VDZ12581.1|1863227_1864229_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	3.1e-185
VDZ12582.1|1864233_1865712_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	4.8e-283
VDZ12583.1|1865870_1866353_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	7.9e-78
VDZ12584.1|1866664_1867279_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	84.3	3.1e-42
VDZ12585.1|1867359_1868355_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.1e-76
VDZ12586.1|1868411_1869179_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ12587.1|1869341_1869785_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VDZ12588.1|1870200_1872729_+	hyaluronate lyase	NA	NA	NA	NA	NA
VDZ12589.1|1872788_1873643_-	Peptidase, M23/M37 family	NA	E5G070	Clostridium_phage	37.9	6.4e-06
VDZ12590.1|1873893_1874409_-	Type I restriction-modification system,specificity subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.3e-09
VDZ12591.1|1874359_1875106_-	type I restriction-modification system S subunit	NA	A0A2H4PQP5	Staphylococcus_phage	42.9	9.8e-35
VDZ12592.1|1875098_1876655_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	1.2e-287
VDZ12593.1|1877018_1877198_-|protease	Serine protease SplF, putative	protease	A0A2H4PQP1	Staphylococcus_phage	89.8	1.7e-22
VDZ12594.1|1877231_1877738_-|protease	Serine protease splD	protease	A0A2H4PQP9	Staphylococcus_phage	96.4	2.3e-88
VDZ12595.1|1877887_1878604_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.9	7.8e-130
VDZ12596.1|1878763_1879483_-|protease	Serine protease splD	protease	A0A2H4PQP9	Staphylococcus_phage	97.1	2.8e-127
VDZ12597.1|1879607_1880327_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	92.1	1.7e-121
VDZ12598.1|1880384_1881107_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	95.8	1.2e-127
VDZ12599.1|1881231_1881939_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.2e-124
VDZ12600.1|1882891_1883473_+	beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	62.2	1.7e-50
VDZ12601.1|1883946_1884132_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	75.4	8.3e-20
VDZ12602.1|1884316_1884643_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	95.1	1.9e-46
VDZ12603.1|1884639_1885401_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	95.3	6.5e-127
VDZ12604.1|1885397_1886090_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	97.4	1.4e-120
VDZ12605.1|1886112_1887486_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	94.5	9.7e-246
VDZ12606.1|1887544_1888015_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	97.4	8.0e-83
VDZ12607.1|1888030_1889275_-	Epidermin biosynthesis protein epiC	NA	A0A2H4PQH9	Staphylococcus_phage	87.7	5.0e-209
VDZ12608.1|1889267_1892261_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	92.3	0.0e+00
VDZ12609.1|1892325_1892469_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
VDZ12610.1|1893204_1893348_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	76.6	9.9e-13
VDZ12611.1|1893590_1894574_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	98.2	2.6e-184
VDZ12612.1|1894575_1895511_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	99.3	1.5e-173
VDZ12613.1|1896238_1896688_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ12614.1|1896708_1897485_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
1897629:1897643	attL	TATTTGACACTTGCT	NA	NA	NA	NA
VDZ12615.1|1897880_1898375_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ12616.1|1898450_1899500_+|integrase	putative integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	89.4	1.3e-181
1899505:1899519	attR	TATTTGACACTTGCT	NA	NA	NA	NA
>prophage 9
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2750532	2458220	2491521	2750532	holin,transposase	Bacillus_virus(25.0%)	32	NA	NA
VDZ13168.1|2458220_2458916_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
VDZ13169.1|2458915_2459857_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
VDZ13170.1|2459873_2460509_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VDZ13171.1|2460505_2461732_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	49.5	2.5e-19
VDZ13172.1|2462401_2463001_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
VDZ13173.1|2463180_2464818_+	Amino acid permease	NA	NA	NA	NA	NA
VDZ13174.1|2465124_2466477_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
VDZ13175.1|2466538_2467726_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
VDZ13176.1|2468119_2468896_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VDZ13177.1|2468888_2469551_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	G3M9Y6	Bacillus_virus	31.0	2.7e-20
VDZ13178.1|2469895_2470963_-	endoglucanase M	NA	NA	NA	NA	NA
VDZ13179.1|2471318_2471585_-	addiction module toxin	NA	NA	NA	NA	NA
VDZ13180.1|2471584_2471842_-	prevent-host-death family protein	NA	NA	NA	NA	NA
VDZ13181.1|2472201_2472657_+	lipoprotein	NA	NA	NA	NA	NA
VDZ13182.1|2472824_2474402_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
VDZ13183.1|2474595_2475345_+	membrane protein	NA	NA	NA	NA	NA
VDZ13184.1|2475568_2476762_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
VDZ13185.1|2476773_2477523_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
VDZ13186.1|2477515_2478331_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	29.8	3.6e-14
VDZ13187.1|2478327_2479197_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ13188.1|2479193_2480129_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ13189.1|2480141_2481740_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
VDZ13190.1|2481882_2483184_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ13191.1|2483176_2483995_-	nicotianamine synthase	NA	NA	NA	NA	NA
VDZ13192.1|2484005_2484827_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
VDZ13193.1|2485701_2486037_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ13194.1|2486326_2487145_-	short chain dehydrogenase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	4.9e-11
VDZ13195.1|2487379_2487484_+	Aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
VDZ13196.1|2487483_2488917_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
VDZ13197.1|2489028_2489451_-|transposase	transposase	transposase	NA	NA	NA	NA
VDZ13198.1|2489980_2490769_-	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.4	8.7e-50
VDZ13199.1|2490792_2491521_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.4	9.9e-24
