assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635225.1_39859_C02	LR134081	Escherichia coli strain NCTC9033 genome assembly, chromosome: 1	1	1208042-1208741	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	Unclear	GAGTTCCCCGCGCTAGCGGGGATAAACCG,GAGTTCCCCGCGCTAGCGGGGATAAACCG,GAGTTCCCCGCGCNAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	Unclear	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	NA,NA	NA|83aa|up_9|LR134081.1_1198519_1198768_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|LR134081.1_1198767_1199103_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|LR134081.1_1199174_1199966_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|LR134081.1_1200193_1201831_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|LR134081.1_1201918_1203217_+	PRK00077, eno, enolase; Provisional	NA|182aa|up_4|LR134081.1_1203644_1204190_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|LR134081.1_1204186_1205335_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_2|LR134081.1_1205349_1206243_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|LR134081.1_1206256_1206859_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|LR134081.1_1207031_1207703_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134081.1_1209378_1210857_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134081.1_1210883_1212161_-	cd06174, MFS, Major Facilitator Superfamily	NA|257aa|down_2|LR134081.1_1212403_1213174_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|30aa|down_3|LR134081.1_1213173_1213263_+	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|76aa|down_4|LR134081.1_1213332_1213560_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|415aa|down_5|LR134081.1_1213544_1214789_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_6|LR134081.1_1214810_1216220_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_7|LR134081.1_1216197_1216977_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|165aa|down_8|LR134081.1_1216973_1217468_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|117aa|down_9|LR134081.1_1217482_1217833_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
GCA_900635225.1_39859_C02	LR134081	Escherichia coli strain NCTC9033 genome assembly, chromosome: 1	2	1234440-1235077	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	NA,NA	NA|251aa|up_9|LR134081.1_1224438_1225191_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|up_8|LR134081.1_1225781_1228481_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|405aa|up_7|LR134081.1_1228578_1229793_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas8e|110aa|up_6|LR134081.1_1229810_1230140_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|179aa|up_5|LR134081.1_1230136_1230673_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LR134081.1_1230687_1231743_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|171aa|up_3|LR134081.1_1231753_1232266_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134081.1_1232482_1233133_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134081.1_1233129_1234053_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134081.1_1234049_1234343_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|307aa|down_0|LR134081.1_1235274_1236195_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134081.1_1236446_1237355_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134081.1_1237356_1238784_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134081.1_1238783_1239389_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134081.1_1239438_1239762_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134081.1_1239955_1240267_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134081.1_1240285_1240996_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134081.1_1240995_1241475_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134081.1_1241471_1242521_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134081.1_1242501_1243263_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635225.1_39859_C02	LR134081	Escherichia coli strain NCTC9033 genome assembly, chromosome: 1	3	1730353-1730470	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	NA|357aa|up_8|LR134081.1_1724334_1725405_-,NA|44aa|up_7|LR134081.1_1725583_1725715_-,NA	NA|307aa|up_9|LR134081.1_1723190_1724111_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|357aa|up_8|LR134081.1_1724334_1725405_-	NA	NA|44aa|up_7|LR134081.1_1725583_1725715_-	NA	NA|293aa|up_6|LR134081.1_1725868_1726747_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|219aa|up_5|LR134081.1_1726898_1727555_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|179aa|up_4|LR134081.1_1727551_1728088_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|122aa|up_3|LR134081.1_1728168_1728534_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_2|LR134081.1_1728563_1728818_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134081.1_1728871_1729126_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134081.1_1729125_1730256_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134081.1_1730489_1732775_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|LR134081.1_1733469_1737222_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134081.1_1737362_1738085_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|494aa|down_3|LR134081.1_1738231_1739713_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|378aa|down_4|LR134081.1_1739726_1740860_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_5|LR134081.1_1741008_1742697_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_6|LR134081.1_1742693_1743317_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|382aa|down_7|LR134081.1_1743460_1744606_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|1096aa|down_8|LR134081.1_1744566_1747854_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|549aa|down_9|LR134081.1_1747854_1749501_+	COG5445, COG5445, Predicted secreted protein [Function unknown]
GCA_900635225.1_39859_C02	LR134081	Escherichia coli strain NCTC9033 genome assembly, chromosome: 1	5	3399152-3399300	5,3	CRISPRCasFinder,PILER-CR	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	NA,NA	NA|204aa|up_9|LR134081.1_3386897_3387509_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_8|LR134081.1_3387667_3391774_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_7|LR134081.1_3391908_3392403_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_6|LR134081.1_3392948_3393914_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|545aa|up_5|LR134081.1_3394167_3395802_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|83aa|up_4|LR134081.1_3395802_3396051_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|289aa|up_3|LR134081.1_3396154_3397021_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|120aa|up_2|LR134081.1_3397065_3397425_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|196aa|up_1|LR134081.1_3397676_3398264_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|LR134081.1_3398548_3398767_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|LR134081.1_3399511_3401788_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|LR134081.1_3401818_3402139_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|LR134081.1_3402461_3402686_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|LR134081.1_3402758_3404705_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|LR134081.1_3404701_3405817_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|LR134081.1_3405931_3406924_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|LR134081.1_3406920_3408579_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|LR134081.1_3409004_3409700_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|LR134081.1_3410157_3411057_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|LR134081.1_3411200_3412853_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCA_900635225.1_39859_C02	LR134081	Escherichia coli strain NCTC9033 genome assembly, chromosome: 1	6	4622011-4622160	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,RT,DinG	NA,NA|519aa|down_6|LR134081.1_4629272_4630829_-	NA|188aa|up_9|LR134081.1_4611242_4611806_-	PRK09825, idnK, gluconokinase	NA|344aa|up_8|LR134081.1_4612022_4613054_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_7|LR134081.1_4613077_4613842_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_6|LR134081.1_4613903_4615223_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_5|LR134081.1_4615288_4616287_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_4|LR134081.1_4616364_4617867_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|106aa|up_3|LR134081.1_4618561_4618879_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|127aa|up_2|LR134081.1_4618826_4619207_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|309aa|up_1|LR134081.1_4619248_4620175_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|LR134081.1_4620462_4621974_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|LR134081.1_4622327_4622771_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|LR134081.1_4622770_4625626_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|LR134081.1_4625679_4626876_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|LR134081.1_4627068_4627572_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|LR134081.1_4627617_4628034_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|LR134081.1_4628195_4629200_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|519aa|down_6|LR134081.1_4629272_4630829_-	NA	NA|100aa|down_7|LR134081.1_4631047_4631347_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|52aa|down_8|LR134081.1_4631343_4631499_-	TIGR00022, Uncharacterized_protein_HI_0227, YhcH/YjgK/YiaL family protein	NA|198aa|down_9|LR134081.1_4631642_4632236_-	COG1309, AcrR, Transcriptional regulator [Transcription]
