assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635185.1_39038_C01	LR134079	Escherichia coli strain NCTC9112 genome assembly, chromosome: 1	1	1156379-1157200	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	Unclear	GAGTTCCCCGCGCTAGCGGGGATAAACCG,GAGTTCCCCGCGCTAGCGGGGATAAACCG,GAGTTCCCCGCGCNAGCGGGGATAAACCG,GTGGTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,32	0	0	NA	NA	I-E:I-E:I-E:I-E	10,13,13,10	13	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	NA,NA	NA|83aa|up_9|LR134079.1_1146855_1147104_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|LR134079.1_1147103_1147439_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|LR134079.1_1147510_1148302_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|LR134079.1_1148529_1150167_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|LR134079.1_1150254_1151553_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|LR134079.1_1151612_1152527_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|LR134079.1_1152523_1153672_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_2|LR134079.1_1153686_1154580_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|LR134079.1_1154593_1155196_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|LR134079.1_1155368_1156040_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134079.1_1157837_1159316_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134079.1_1159342_1160620_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134079.1_1160938_1161724_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134079.1_1161793_1163248_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134079.1_1163269_1164679_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134079.1_1164656_1165436_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134079.1_1165432_1166293_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|LR134079.1_1166439_1167015_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|LR134079.1_1167031_1167292_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|LR134079.1_1167282_1168554_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional
GCA_900635185.1_39038_C01	LR134079	Escherichia coli strain NCTC9112 genome assembly, chromosome: 1	2	1182900-1183782	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	NA,NA	NA|571aa|up_9|LR134079.1_1171111_1172824_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134079.1_1172897_1173632_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|up_7|LR134079.1_1174241_1176941_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|LR134079.1_1177038_1178601_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|LR134079.1_1178597_1179134_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LR134079.1_1179148_1180204_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134079.1_1180214_1180961_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134079.1_1180942_1181593_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134079.1_1181589_1182513_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134079.1_1182509_1182803_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134079.1_1183863_1184901_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134079.1_1185152_1186061_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134079.1_1186062_1187490_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134079.1_1187489_1188095_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134079.1_1188144_1188468_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134079.1_1188661_1188973_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134079.1_1188991_1189702_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134079.1_1189701_1190181_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134079.1_1190177_1191227_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134079.1_1191207_1191969_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635185.1_39038_C01	LR134079	Escherichia coli strain NCTC9112 genome assembly, chromosome: 1	3	1732223-1732340	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	NA|357aa|up_6|LR134079.1_1726202_1727273_-,NA|44aa|up_5|LR134079.1_1727451_1727583_-,NA	NA|543aa|up_9|LR134079.1_1721638_1723267_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_8|LR134079.1_1723539_1724898_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_7|LR134079.1_1724902_1725979_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|357aa|up_6|LR134079.1_1726202_1727273_-	NA	NA|44aa|up_5|LR134079.1_1727451_1727583_-	NA	NA|293aa|up_4|LR134079.1_1727736_1728615_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|397aa|up_3|LR134079.1_1728766_1729957_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|LR134079.1_1730037_1730688_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134079.1_1730741_1730996_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134079.1_1730995_1732126_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134079.1_1732359_1734645_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|LR134079.1_1735341_1739094_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134079.1_1739234_1739957_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|LR134079.1_1740103_1742731_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|LR134079.1_1742879_1744568_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|LR134079.1_1744564_1745188_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|LR134079.1_1745331_1749726_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|LR134079.1_1749726_1751376_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|LR134079.1_1751380_1752157_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|107aa|down_9|LR134079.1_1752230_1752551_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_900635185.1_39038_C01	LR134079	Escherichia coli strain NCTC9112 genome assembly, chromosome: 1	4	2423248-2423371	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	NA,NA	NA|209aa|up_9|LR134079.1_2413235_2413862_+	PRK09898, PRK09898, ferredoxin-like protein	NA|612aa|up_8|LR134079.1_2413882_2415718_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|98aa|up_7|LR134079.1_2416172_2416466_+	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|85aa|up_6|LR134079.1_2416507_2416762_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|LR134079.1_2416774_2417413_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|LR134079.1_2417476_2418145_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|LR134079.1_2418141_2418927_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_2|LR134079.1_2418978_2419743_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|403aa|up_1|LR134079.1_2419873_2421082_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|530aa|up_0|LR134079.1_2421092_2422682_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134079.1_2423685_2424942_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134079.1_2424982_2426356_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134079.1_2426570_2427212_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134079.1_2427251_2428400_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134079.1_2428690_2429902_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134079.1_2430014_2430947_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134079.1_2430943_2431969_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134079.1_2432522_2433692_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134079.1_2433837_2434419_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|276aa|down_9|LR134079.1_2434546_2435374_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900635185.1_39038_C01	LR134079	Escherichia coli strain NCTC9112 genome assembly, chromosome: 1	6	3486930-3487078	6,4	CRISPRCasFinder,PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	NA,NA|61aa|down_2|LR134079.1_3490614_3490797_-,NA|33aa|down_3|LR134079.1_3491237_3491336_-,NA|138aa|down_4|LR134079.1_3491998_3492412_-,NA|69aa|down_7|LR134079.1_3493827_3494034_-	NA|431aa|up_9|LR134079.1_3471931_3473224_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|LR134079.1_3473314_3474658_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|LR134079.1_3474668_3475280_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|LR134079.1_3475438_3479545_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|LR134079.1_3479679_3480174_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|LR134079.1_3480718_3481684_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|LR134079.1_3481806_3483573_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|LR134079.1_3483573_3485295_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|LR134079.1_3485336_3486041_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|LR134079.1_3486325_3486544_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|LR134079.1_3487289_3489566_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|LR134079.1_3489596_3489917_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|61aa|down_2|LR134079.1_3490614_3490797_-	NA	NA|33aa|down_3|LR134079.1_3491237_3491336_-	NA	NA|138aa|down_4|LR134079.1_3491998_3492412_-	NA	NA|112aa|down_5|LR134079.1_3492424_3492760_-	pfam02924, HDPD, Bacteriophage lambda head decoration protein D	NA|352aa|down_6|LR134079.1_3492772_3493828_-	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|69aa|down_7|LR134079.1_3493827_3494034_-	NA	NA|91aa|down_8|LR134079.1_3494274_3494547_-	pfam06069, PerC, PerC transcriptional activator	NA|137aa|down_9|LR134079.1_3494557_3494968_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)
