assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635165.1_38670_F01	LR134031	Escherichia coli strain NCTC11151 genome assembly, chromosome: 1	1	2406437-2406560	1	CRISPRCasFinder	no	DEDDh	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|471aa|up_9|LR134031.1_2394577_2395990_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|LR134031.1_2396546_2396756_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|LR134031.1_2397211_2397838_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|LR134031.1_2397858_2399961_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|LR134031.1_2399973_2400612_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|LR134031.1_2400675_2401344_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|LR134031.1_2401340_2402126_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_2|LR134031.1_2402177_2402942_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|LR134031.1_2402953_2404558_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|LR134031.1_2404683_2404989_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|LR134031.1_2406875_2408132_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134031.1_2408172_2409546_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134031.1_2409760_2410402_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134031.1_2410441_2411590_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134031.1_2411880_2413092_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134031.1_2413204_2414137_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134031.1_2414133_2415159_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134031.1_2415712_2416882_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134031.1_2417027_2417609_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134031.1_2417736_2418552_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900635165.1_38670_F01	LR134031	Escherichia coli strain NCTC11151 genome assembly, chromosome: 1	3	3181164-3181552	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,6,5	6	TypeI-F	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|431aa|up_9|LR134031.1_3166502_3167795_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|LR134031.1_3167885_3169229_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|LR134031.1_3169239_3169851_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1348aa|up_6|LR134031.1_3170009_3174053_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|LR134031.1_3174187_3174682_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|357aa|up_4|LR134031.1_3175120_3176191_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|LR134031.1_3176313_3178080_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|LR134031.1_3178080_3179802_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|LR134031.1_3179843_3180548_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|LR134031.1_3180832_3181051_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|down_0|LR134031.1_3182092_3182647_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|LR134031.1_3182657_3183659_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|214aa|down_2|LR134031.1_3183669_3184311_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas5f|72aa|down_3|LR134031.1_3184377_3184593_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|down_4|LR134031.1_3184589_3185897_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_5|LR134031.1_3186226_3189460_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_6|LR134031.1_3189456_3190440_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_7|LR134031.1_3191332_3193609_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_8|LR134031.1_3193639_3193960_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_9|LR134031.1_3194282_3194507_+	PRK09937, PRK09937, cold shock-like protein CspD
GCA_900635165.1_38670_F01	LR134031	Escherichia coli strain NCTC11151 genome assembly, chromosome: 1	4	3190613-3191120	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,8,7	8	TypeI-F	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|574aa|up_9|LR134031.1_3178080_3179802_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_8|LR134031.1_3179843_3180548_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_7|LR134031.1_3180832_3181051_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|up_6|LR134031.1_3182092_3182647_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_5|LR134031.1_3182657_3183659_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|214aa|up_4|LR134031.1_3183669_3184311_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas5f|72aa|up_3|LR134031.1_3184377_3184593_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|up_2|LR134031.1_3184589_3185897_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|up_1|LR134031.1_3186226_3189460_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|up_0|LR134031.1_3189456_3190440_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|LR134031.1_3191332_3193609_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|LR134031.1_3193639_3193960_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|LR134031.1_3194282_3194507_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|LR134031.1_3194579_3196526_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|LR134031.1_3196522_3197638_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|LR134031.1_3197752_3198745_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|LR134031.1_3198741_3200400_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|LR134031.1_3200825_3201521_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|LR134031.1_3201841_3202741_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|LR134031.1_3202884_3204537_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCA_900635165.1_38670_F01	LR134031	Escherichia coli strain NCTC11151 genome assembly, chromosome: 1	5	3351531-3351661	5	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	TTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCT	36	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|91aa|up_5|LR134031.1_3343561_3343834_-,NA|36aa|down_4|LR134031.1_3355289_3355397_+,NA|125aa|down_6|LR134031.1_3357033_3357408_+	NA|98aa|up_9|LR134031.1_3339313_3339607_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_8|LR134031.1_3339606_3339720_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_7|LR134031.1_3339734_3340874_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_6|LR134031.1_3340889_3342458_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|91aa|up_5|LR134031.1_3343561_3343834_-	NA	NA|372aa|up_4|LR134031.1_3343787_3344903_-	sd00006, TPR, Tetratricopeptide repeat	NA|290aa|up_3|LR134031.1_3345142_3346012_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_2|LR134031.1_3346011_3347178_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|up_1|LR134031.1_3347271_3348489_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|up_0|LR134031.1_3348503_3351305_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_0|LR134031.1_3351665_3352382_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_1|LR134031.1_3352397_3354164_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_2|LR134031.1_3354163_3354511_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|135aa|down_3|LR134031.1_3354504_3354909_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_4|LR134031.1_3355289_3355397_+	NA	NA|428aa|down_5|LR134031.1_3355602_3356886_+	PRK05614, gltA, citrate synthase	NA|125aa|down_6|LR134031.1_3357033_3357408_+	NA	NA|349aa|down_7|LR134031.1_3357559_3358606_+	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|264aa|down_8|LR134031.1_3358602_3359394_-	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|245aa|down_9|LR134031.1_3359429_3360164_-	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins
GCA_900635165.1_38670_F01	LR134031	Escherichia coli strain NCTC11151 genome assembly, chromosome: 1	6	4283681-4283820	6	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,c2c9_V-U4,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|340aa|up_9|LR134031.1_4271891_4272911_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|LR134031.1_4272914_4273478_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|LR134031.1_4273694_4274726_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|LR134031.1_4274749_4275514_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|LR134031.1_4275578_4276898_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|LR134031.1_4276964_4277963_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|LR134031.1_4278040_4279543_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|LR134031.1_4279703_4280786_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|360aa|up_1|LR134031.1_4280785_4281865_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|LR134031.1_4282152_4283664_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|LR134031.1_4283921_4284365_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|LR134031.1_4284364_4287220_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|LR134031.1_4287266_4288454_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|LR134031.1_4288646_4289150_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|LR134031.1_4289326_4289743_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|LR134031.1_4289904_4290909_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|LR134031.1_4290954_4291407_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|LR134031.1_4292084_4293305_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|315aa|down_8|LR134031.1_4293315_4294260_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|LR134031.1_4294270_4295275_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
