assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	1	995042-995926	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|919aa|up_9|LR134000.1_981635_984392_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|LR134000.1_984448_985750_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|LR134000.1_985797_988032_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|LR134000.1_988109_988358_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|LR134000.1_988357_988693_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|LR134000.1_988763_989555_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LR134000.1_989782_991420_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LR134000.1_991507_992806_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|LR134000.1_992865_993738_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|LR134000.1_994031_994703_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|425aa|down_0|LR134000.1_995972_997247_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_1|LR134000.1_998583_1000062_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|LR134000.1_1000088_1001366_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|LR134000.1_1001684_1002470_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|LR134000.1_1002539_1003994_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_5|LR134000.1_1004015_1005425_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|LR134000.1_1005402_1006182_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|LR134000.1_1006178_1007039_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|LR134000.1_1007186_1007762_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|LR134000.1_1007778_1008039_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	2	997307-997945	2,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas3	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,27,27	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA|157aa|up_1|LR134000.1_995465_995936_-,NA	NA|745aa|up_9|LR134000.1_985797_988032_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|LR134000.1_988109_988358_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|LR134000.1_988357_988693_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|LR134000.1_988763_989555_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|LR134000.1_989782_991420_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|LR134000.1_991507_992806_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_3|LR134000.1_992865_993738_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_2|LR134000.1_994031_994703_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|157aa|up_1|LR134000.1_995465_995936_-	NA	NA|425aa|up_0|LR134000.1_995972_997247_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_0|LR134000.1_998583_1000062_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134000.1_1000088_1001366_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134000.1_1001684_1002470_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134000.1_1002539_1003994_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134000.1_1004015_1005425_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134000.1_1005402_1006182_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134000.1_1006178_1007039_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|LR134000.1_1007186_1007762_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|LR134000.1_1007778_1008039_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|LR134000.1_1008029_1009301_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	3	1023495-1023889	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,6,6	6	TypeI-E	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|571aa|up_9|LR134000.1_1011858_1013571_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134000.1_1013645_1014380_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|LR134000.1_1014738_1017405_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|LR134000.1_1017819_1019328_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|LR134000.1_1019320_1019803_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|LR134000.1_1019815_1020907_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|LR134000.1_1020909_1021584_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|LR134000.1_1021570_1022170_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|LR134000.1_1022185_1023103_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|LR134000.1_1023104_1023389_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134000.1_1023909_1024947_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134000.1_1025198_1026107_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134000.1_1026108_1027536_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134000.1_1027535_1028141_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134000.1_1028190_1028514_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134000.1_1028707_1029019_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134000.1_1029037_1029748_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134000.1_1029747_1030227_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134000.1_1030223_1031273_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134000.1_1031253_1032015_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4	1516188-1516305	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|301aa|up_9|LR134000.1_1505667_1506570_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134000.1_1506763_1507954_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134000.1_1507950_1509210_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|LR134000.1_1509199_1510828_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134000.1_1511100_1512459_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134000.1_1512463_1513540_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134000.1_1513581_1513788_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134000.1_1514002_1514653_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134000.1_1514706_1514961_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134000.1_1514960_1516091_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134000.1_1516324_1518610_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1182aa|down_1|LR134000.1_1519512_1523058_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134000.1_1523185_1523908_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|LR134000.1_1524054_1526682_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|LR134000.1_1526830_1528519_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|LR134000.1_1528515_1529139_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|LR134000.1_1529282_1533677_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|LR134000.1_1533677_1535327_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|LR134000.1_1535331_1536108_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|LR134000.1_1536181_1537366_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	5	2156054-2156177	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|79aa|up_9|LR134000.1_2144961_2145198_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134000.1_2145508_2146921_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134000.1_2147477_2147687_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134000.1_2148141_2148768_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134000.1_2148788_2150891_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134000.1_2150903_2151542_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134000.1_2151605_2152274_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134000.1_2152270_2153056_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134000.1_2153107_2153872_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134000.1_2153883_2155488_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134000.1_2156491_2157748_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134000.1_2157788_2159162_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134000.1_2159376_2160018_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134000.1_2160057_2161206_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134000.1_2161496_2162708_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134000.1_2162820_2163753_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134000.1_2163749_2164775_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134000.1_2165328_2166498_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134000.1_2166643_2167225_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134000.1_2167352_2168168_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	7	2974507-2974711	7,4,4	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|431aa|up_9|LR134000.1_2959630_2960923_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|LR134000.1_2961013_2962357_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|LR134000.1_2962367_2962979_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|LR134000.1_2963133_2967123_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|LR134000.1_2967257_2967752_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|LR134000.1_2968296_2969262_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|LR134000.1_2969384_2971151_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|LR134000.1_2971151_2972873_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|LR134000.1_2972914_2973619_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|LR134000.1_2973903_2974122_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|LR134000.1_2974920_2977197_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|LR134000.1_2977227_2977548_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|LR134000.1_2977870_2978095_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|LR134000.1_2978167_2980114_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|366aa|down_4|LR134000.1_2980110_2981208_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|LR134000.1_2981340_2982333_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|LR134000.1_2982329_2983988_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|LR134000.1_2984412_2985108_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|LR134000.1_2985602_2986502_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|LR134000.1_2986645_2988298_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	8	3094785-3094929	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|171aa|up_9|LR134000.1_3082149_3082662_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|303aa|up_8|LR134000.1_3084069_3084978_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|LR134000.1_3085169_3087191_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|LR134000.1_3087769_3088447_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|LR134000.1_3088439_3089195_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|LR134000.1_3089181_3090336_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|LR134000.1_3090332_3091373_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|LR134000.1_3091459_3092749_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|LR134000.1_3092807_3093284_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|LR134000.1_3093435_3094719_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134000.1_3094952_3097214_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134000.1_3097396_3098830_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134000.1_3098905_3099958_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134000.1_3100141_3101095_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134000.1_3101135_3102131_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134000.1_3102285_3103104_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134000.1_3103104_3104163_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134000.1_3104165_3104855_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134000.1_3104854_3105628_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134000.1_3105794_3105944_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	9	3473302-3473446	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|357aa|up_9|LR134000.1_3458443_3459514_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|LR134000.1_3459606_3460188_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|LR134000.1_3460192_3462010_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|LR134000.1_3462165_3463539_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|LR134000.1_3463614_3464934_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|LR134000.1_3465340_3466636_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|LR134000.1_3466693_3467383_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|LR134000.1_3467572_3468775_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1048aa|up_1|LR134000.1_3468771_3471915_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|423aa|up_0|LR134000.1_3471956_3473225_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|LR134000.1_3473469_3474378_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|326aa|down_1|LR134000.1_3474436_3475414_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|40aa|down_2|LR134000.1_3475774_3475894_+	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional	NA|95aa|down_3|LR134000.1_3476060_3476345_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|LR134000.1_3476416_3477094_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|LR134000.1_3477351_3477543_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|LR134000.1_3477592_3478117_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|LR134000.1_3478293_3478758_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|LR134000.1_3478877_3479687_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|LR134000.1_3479703_3480819_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCA_900635145.1_38490_G02	LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	10	3630888-3630984	10	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|549aa|up_9|LR134000.1_3621162_3622809_-	PRK07193, fliF, flagellar MS-ring protein; Reviewed	NA|114aa|up_8|LR134000.1_3622813_3623155_-	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|329aa|up_7|LR134000.1_3623169_3624156_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|284aa|up_6|LR134000.1_3624542_3625394_+	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|124aa|up_5|LR134000.1_3625386_3625758_+	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|251aa|up_4|LR134000.1_3625754_3626507_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|91aa|up_3|LR134000.1_3626509_3626782_+	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|261aa|up_2|LR134000.1_3626783_3627566_+	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|up_1|LR134000.1_3627555_3628695_+	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|698aa|up_0|LR134000.1_3628678_3630772_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|LR134000.1_3630987_3631485_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|LR134000.1_3631660_3632434_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|LR134000.1_3632619_3632880_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|LR134000.1_3632882_3633161_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|LR134000.1_3633316_3634057_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|LR134000.1_3634027_3634795_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|LR134000.1_3635000_3635579_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|LR134000.1_3635818_3638263_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|149aa|down_8|LR134000.1_3638305_3638752_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|LR134000.1_3638932_3639703_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
