The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	45493	52666	4644134	integrase	Enterobacteria_phage(100.0%)	7	45551:45564	57438:57451
VDY66563.1|45493_47137_-	putative prophage DNA primase	NA	Q7M2A8	Enterobacteria_phage	99.3	0.0e+00
45551:45564	attL	CAGCGTCAGGTTGG	NA	NA	NA	NA
VDY66564.1|47151_47442_-	putative prophage protein	NA	Q7M298	Enterobacteria_phage	98.2	1.2e-25
VDY66565.1|47851_48586_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	98.4	6.1e-130
VDY66566.1|48582_48828_+	putative prophage regulatory protein	NA	Q7M294	Enterobacteria_phage	100.0	1.8e-41
VDY66567.1|48842_49415_+	prophage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	99.5	5.3e-97
VDY66568.1|49694_51461_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY66569.1|51490_52666_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	91.2	3.8e-206
57438:57451	attR	CAGCGTCAGGTTGG	NA	NA	NA	NA
>prophage 2
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	752456	773354	4644134	transposase,protease	Acinetobacter_phage(25.0%)	24	NA	NA
VDY67216.1|752456_752951_+|protease	hydrogenase 2 maturation protease	protease	NA	NA	NA	NA
VDY67217.1|752943_753432_+	hydrogenase-2 component protein	NA	NA	NA	NA	NA
VDY67218.1|753424_753766_+	hydrogenase nickel incorporation protein HybF	NA	NA	NA	NA	NA
VDY67219.1|753778_754027_+	hydrogenase-2 component protein	NA	NA	NA	NA	NA
VDY67220.1|754149_755016_-	glutathione S-transferase	NA	NA	NA	NA	NA
VDY67221.1|755220_757080_+	bifunctional glutathionylspermidine synthetase/amidase [includes glutathionylspermidine synthase;glutathionylspermidine amidase]	NA	NA	NA	NA	NA
VDY67222.1|757371_758871_+	low-affinity inorganic phosphate transporter 2	NA	NA	NA	NA	NA
VDY67223.1|758919_759612_-	ATP-binding protein YghT	NA	NA	NA	NA	NA
VDY67224.1|759800_760499_+	nucleoside triphosphate hydrolase domain	NA	NA	NA	NA	NA
VDY67225.1|760530_761289_+	ATP-binding protein yghR	NA	NA	NA	NA	NA
VDY67226.1|761334_762120_+	membrane protein, conserved protein	NA	NA	NA	NA	NA
VDY67227.1|762166_762466_+|transposase	transposase	transposase	NA	NA	NA	NA
VDY67228.1|762462_763329_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VDY67229.1|763325_763970_-	HTH regulator, TetR family	NA	NA	NA	NA	NA
VDY67230.1|764217_765495_-	Predicted membrane protein (DUF2254)	NA	NA	NA	NA	NA
VDY67231.1|765454_765613_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY67232.1|765557_767555_-	secondary glycine betaine transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	7.4e-21
VDY67233.1|767708_768527_-|transposase	IS600 orfAB' transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.2	1.2e-65
VDY67234.1|768611_769763_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
VDY67235.1|770079_770493_+|transposase	transposase	transposase	Q716C2	Shigella_phage	94.7	1.5e-61
VDY67236.1|770489_770732_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	92.4	4.7e-39
VDY67237.1|770928_771072_+	KpLE2 phage-like element, protein	NA	NA	NA	NA	NA
VDY67238.1|771629_772397_-	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VDY67239.1|772397_773354_-	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
>prophage 3
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	1031253	1044436	4644134	tRNA	Escherichia_phage(50.0%)	12	NA	NA
VDY67474.1|1031253_1032015_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
VDY67475.1|1032008_1032635_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
VDY67476.1|1032774_1033914_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
VDY67477.1|1034135_1034969_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	5.1e-32
VDY67478.1|1035062_1036427_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
VDY67479.1|1036515_1037292_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VDY67480.1|1037296_1037935_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
VDY67481.1|1037931_1039194_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
VDY67482.1|1039190_1040099_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.5	5.1e-118
VDY67483.1|1040294_1041062_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
VDY67484.1|1041112_1041769_-	serine/threonine-specific protein phosphatase 2	NA	A0A077SLQ6	Escherichia_phage	47.0	6.6e-51
VDY67485.1|1041874_1044436_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 4
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	1124161	1134272	4644134	integrase	Enterobacteria_phage(85.71%)	10	1123142:1123155	1135642:1135655
1123142:1123155	attL	AATATCATTTATCC	NA	NA	NA	NA
VDY67559.1|1124161_1126495_-	putative prophage DNA primase	NA	Q7M2A8	Enterobacteria_phage	98.7	0.0e+00
VDY67560.1|1126509_1126830_-	P4 phage protein	NA	NA	NA	NA	NA
VDY67561.1|1126965_1127421_-	putative prophage protein	NA	Q7M298	Enterobacteria_phage	99.1	1.6e-64
VDY67562.1|1127413_1127701_-	prophage derepression protein	NA	Q7M2A0	Enterobacteria_phage	97.9	8.6e-48
VDY67563.1|1128280_1128547_-	prophage regulatory protein	NA	Q7M299	Enterobacteria_phage	100.0	4.9e-45
VDY67564.1|1129099_1129834_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	98.8	2.3e-129
VDY67565.1|1129830_1130331_+	transcriptional activator Ogr/delta	NA	NA	NA	NA	NA
VDY67566.1|1130404_1130977_+	prophage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	96.2	1.9e-94
VDY67567.1|1131390_1133076_-	CP4-57 prophage; putative inner membrane protein	NA	NA	NA	NA	NA
VDY67568.1|1133072_1134272_-|integrase	putative phage integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.7	5.1e-110
1135642:1135655	attR	GGATAAATGATATT	NA	NA	NA	NA
>prophage 5
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	1644825	1654270	4644134		Enterobacteria_phage(85.71%)	10	NA	NA
VDY68015.1|1644825_1645752_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
VDY68016.1|1645756_1646488_+	ABC transporter permease	NA	NA	NA	NA	NA
VDY68017.1|1646468_1646576_-	putative inner membrane protein	NA	NA	NA	NA	NA
VDY68018.1|1646635_1647367_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
VDY68019.1|1647588_1649274_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VDY68020.1|1649270_1649990_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VDY68021.1|1650036_1650507_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VDY68022.1|1650547_1651009_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	98.0	1.3e-74
VDY68023.1|1651133_1653137_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
VDY68024.1|1653133_1654270_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	8.5e-163
>prophage 6
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	1779850	1832609	4644134	holin,capsid,tail,portal,head,terminase,protease,plate,transposase,integrase,lysis	Enterobacteria_phage(29.51%)	71	1770518:1770532	1784904:1784918
1770518:1770532	attL	GGCCGTACTGGTTGG	NA	NA	NA	NA
VDY68127.1|1779850_1780747_+|integrase	integrase	integrase	K7P7J2	Enterobacteria_phage	100.0	1.1e-173
VDY68128.1|1780727_1780919_-	transcriptional regulator, AlpA family	NA	A0A0P0ZBL0	Stx2-converting_phage	100.0	1.7e-31
VDY68129.1|1781023_1781203_-	prophage protein	NA	K7PL40	Enterobacteria_phage	100.0	2.5e-29
VDY68130.1|1781299_1782019_-	prophage protein	NA	K7PK20	Enterobacteria_phage	94.1	1.3e-129
VDY68131.1|1782015_1782237_-	putative C4-type zinc finger protein	NA	A0A1I9LJM6	Stx_converting_phage	100.0	2.9e-35
VDY68132.1|1782390_1783455_-	DNA thiolation protein; phage protein	NA	T1SBJ4	Salmonella_phage	65.1	2.0e-134
VDY68133.1|1783451_1783610_-	phage protein	NA	M1FJ61	Enterobacteria_phage	88.5	6.4e-21
VDY68134.1|1783606_1784287_-	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	99.1	4.6e-132
VDY68135.1|1784283_1785069_-	bacteriophage recombination protein	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
1784904:1784918	attR	GGCCGTACTGGTTGG	NA	NA	NA	NA
VDY68136.1|1785074_1785371_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	98.0	2.3e-48
VDY68137.1|1785446_1785653_-	prophage Kil protein	NA	K7P6H3	Enterobacteria_phage	83.8	4.2e-28
VDY68138.1|1786133_1786877_-	protein phosphatase from phage origin	NA	I6PCV8	Cronobacter_phage	45.9	1.9e-54
VDY68139.1|1786873_1787599_-	protein kinase from phage origin	NA	V5LSC6	Emiliania_huxleyi_virus	22.8	2.9e-07
VDY68140.1|1787694_1788450_-	Regulatory protein CI from bacteriophage origin	NA	Q76H56	Enterobacteria_phage	75.0	1.8e-92
VDY68141.1|1788488_1788719_+	Cro	NA	A0A2H4FNF3	Salmonella_phage	68.0	1.5e-21
VDY68142.1|1788788_1789328_+	bacteriophage regulatory protein CII	NA	M9NZI6	Enterobacteria_phage	66.7	6.8e-62
VDY68143.1|1789339_1790344_+	replication protein O	NA	A0A0M5M7Y1	Salmonella_phage	63.4	9.6e-110
VDY68144.1|1790340_1791042_+	replication protein P of bacteriophage	NA	A0A0P0ZD31	Stx2-converting_phage	97.9	1.6e-127
VDY68145.1|1791038_1791326_+	ren protein from phage origin	NA	A0A0N6WES4	Escherichia_phage	96.8	1.5e-44
VDY68146.1|1791696_1793115_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68147.1|1793390_1793846_+	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	67.5	3.7e-61
VDY68148.1|1793845_1794016_+	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
VDY68149.1|1794008_1794299_+	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	92.7	8.2e-46
VDY68150.1|1794295_1794658_+	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	97.4	8.6e-61
VDY68151.1|1794657_1794795_+	DLP12 prophage; small protein	NA	K7PHH3	Enterobacteria_phage	72.1	2.2e-09
VDY68152.1|1794791_1795481_+	Putative antiterminator Q	NA	I6PDF8	Cronobacter_phage	48.5	1.1e-56
VDY68153.1|1795802_1796108_+|holin	Putative holin protein	holin	A0A286N2Q5	Klebsiella_phage	87.6	7.0e-40
VDY68154.1|1796094_1796571_+	phage endolysin	NA	K7PKV2	Enterobacteria_phage	96.2	2.3e-85
VDY68155.1|1796567_1797005_+|lysis	bacteriophage lysis protein	lysis	K7PKZ8	Enterobacterial_phage	98.6	3.8e-71
VDY68156.1|1797206_1797704_+	KilA-N domain-containing protein	NA	A0A220NRM9	Escherichia_phage	99.4	3.1e-93
VDY68157.1|1797700_1797958_+	bacteriophage protein	NA	A0A0P0ZBT1	Stx2-converting_phage	100.0	5.0e-39
VDY68158.1|1798088_1798367_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68159.1|1798876_1799371_+|terminase	phage terminase small subunit	terminase	U5P067	Shigella_phage	98.8	2.5e-87
VDY68160.1|1799367_1801101_+|terminase	phage terminase, large subunit	terminase	U5P0Q5	Shigella_phage	98.6	0.0e+00
VDY68161.1|1801112_1801295_+	prophage protein	NA	M1FJ83	Enterobacteria_phage	100.0	1.7e-25
VDY68162.1|1801294_1802536_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.8	2.0e-242
VDY68163.1|1802513_1803164_+|head,protease	pro-head protease	head,protease	U5P4H2	Shigella_phage	99.5	9.5e-119
VDY68164.1|1803178_1804384_+|capsid	major capsid protein	capsid	M1FPN2	Enterobacteria_phage	98.8	2.2e-222
VDY68165.1|1804433_1804634_+	phage protein	NA	S5FNU1	Shigella_phage	100.0	3.4e-27
VDY68166.1|1804636_1804960_+	phage protein	NA	U5P072	Shigella_phage	99.1	1.1e-56
VDY68167.1|1804956_1805367_+	prophage protein	NA	M1FJ87	Enterobacteria_phage	94.1	8.8e-70
VDY68168.1|1805341_1805848_+	prophage protein	NA	M1FPE2	Enterobacteria_phage	92.9	1.3e-83
VDY68169.1|1805844_1806405_+	phage protein	NA	M1FQV7	Enterobacteria_phage	100.0	1.0e-105
VDY68170.1|1806413_1806584_+	phage protein	NA	Q8SBH3	Shigella_phage	100.0	9.3e-26
VDY68171.1|1806567_1808064_+|tail	phage tail sheath protein	tail	S5FKL0	Shigella_phage	97.6	2.9e-272
VDY68172.1|1808063_1808420_+	phage protein	NA	U5P076	Shigella_phage	100.0	5.3e-63
VDY68173.1|1808419_1808689_+	phage protein	NA	S5FNR3	Shigella_phage	100.0	3.5e-43
VDY68174.1|1808830_1810666_+|tail	bacteriophage V tail protein	tail	S5FM63	Shigella_phage	99.8	7.0e-308
VDY68175.1|1810726_1812055_+	Tail/DNA circulation protein	NA	Q8SBG8	Shigella_phage	99.1	8.4e-247
VDY68176.1|1812051_1813131_+|tail	putative phage tail protein	tail	Q8SBG7	Shigella_phage	99.4	2.0e-206
VDY68177.1|1813130_1813679_+|plate	putative phage baseplate protein	plate	U5P081	Shigella_phage	98.4	3.3e-96
VDY68178.1|1813678_1814104_+|tail	bacteriophage V tail protein	tail	U5P0R9	Shigella_phage	99.3	3.9e-81
VDY68179.1|1814090_1815149_+|plate	putative phage baseplate protein	plate	Q8SBG4	Shigella_phage	99.1	9.5e-201
VDY68180.1|1815139_1815724_+|tail	putative phage tail protein	tail	O22003	Shigella_phage	99.5	4.1e-113
VDY68181.1|1815727_1816339_+	Uncharacterised protein	NA	M1FN94	Enterobacteria_phage	57.8	4.0e-50
VDY68182.1|1816341_1816758_+	CPS-53 (KpLE1) prophage protein	NA	A0A077KAY3	Edwardsiella_phage	46.1	1.0e-09
VDY68183.1|1816978_1818097_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	34.9	6.0e-36
VDY68184.1|1818248_1818638_+	DNA repair protein	NA	G8C7R9	Escherichia_phage	89.8	3.2e-61
VDY68185.1|1818981_1820148_+	penicillin-binding protein 6B	NA	B6DZZ7	Stx2-converting_phage	98.5	1.2e-225
VDY68186.1|1820266_1820740_+	DNA gyrase inhibitory protein	NA	NA	NA	NA	NA
VDY68187.1|1820937_1821996_+	inner membrane protein	NA	NA	NA	NA	NA
VDY68188.1|1822167_1822497_+	putative alpha helix protein	NA	NA	NA	NA	NA
VDY68189.1|1823394_1823589_-	CP4-44 prophage	NA	NA	NA	NA	NA
VDY68190.1|1823585_1824020_-	anti-restriction protein	NA	NA	NA	NA	NA
VDY68191.1|1824101_1824986_-	CP4-57 prophage protein	NA	A0A2C9CX26	Yersinia_phage	38.7	2.1e-44
VDY68192.1|1824993_1825413_-	putative vimentin	NA	NA	NA	NA	NA
VDY68193.1|1825630_1826248_-	putative GTP-binding protein	NA	NA	NA	NA	NA
VDY68194.1|1826585_1827737_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68195.1|1829359_1830382_+|transposase	transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
VDY68196.1|1830381_1831161_+	insertion sequence IS100, ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	99.6	1.3e-138
VDY68197.1|1832243_1832609_+|transposase	transposase	transposase	Q76S41	Shigella_phage	100.0	9.6e-60
>prophage 7
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	2229639	2272322	4644134	tail,terminase,protease,transposase,integrase,lysis	Enterobacteria_phage(33.33%)	44	2237215:2237230	2264132:2264147
VDY68582.1|2229639_2230461_-|protease	putative protease	protease	NA	NA	NA	NA
VDY68583.1|2230736_2231045_-	acid shock protein	NA	NA	NA	NA	NA
VDY68584.1|2231468_2232722_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VDY68585.1|2232828_2233722_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VDY68586.1|2233856_2235077_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
VDY68587.1|2235201_2235897_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
VDY68588.1|2235849_2237106_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
2237215:2237230	attL	CTTTAAGAGATAAAAA	NA	NA	NA	NA
VDY68589.1|2237300_2237915_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
VDY68590.1|2237957_2238812_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
VDY68591.1|2238813_2239431_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
VDY68592.1|2239441_2241838_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.6	4.8e-208
VDY68593.1|2241925_2244352_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	49.2	4.5e-214
VDY68594.1|2244550_2244856_-	protein	NA	NA	NA	NA	NA
VDY68595.1|2244927_2245674_+	lipoprotein	NA	NA	NA	NA	NA
VDY68596.1|2245676_2246237_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VDY68597.1|2246271_2246613_-	protein	NA	NA	NA	NA	NA
VDY68598.1|2246747_2247074_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
VDY68599.1|2247279_2248494_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
VDY68600.1|2248505_2249525_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
VDY68601.1|2249712_2250993_-|integrase	defective integrase; Qin prophage	integrase	B6DZ48	Enterobacteria_phage	62.1	3.3e-155
VDY68602.1|2251027_2251264_-	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VDY68603.1|2251351_2252485_-	Exonuclease RNase T and DNA polymerase III	NA	A0A192Y6E0	Salmonella_phage	56.7	3.9e-59
VDY68604.1|2252654_2253011_+	putative methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
VDY68605.1|2254163_2254343_+	membrane protein	NA	NA	NA	NA	NA
VDY68606.1|2254677_2255991_+|integrase,transposase	putative integrase/transposase	integrase,transposase	NA	NA	NA	NA
VDY68607.1|2256452_2256785_-	Qin prophage protein	NA	NA	NA	NA	NA
VDY68608.1|2257317_2257557_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
VDY68609.1|2257556_2257844_+	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
VDY68610.1|2257915_2258071_+	putative host cell-killing modulation protein	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
VDY68611.1|2258287_2258539_+	putative prophage protein	NA	NA	NA	NA	NA
VDY68612.1|2258885_2259935_+	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
VDY68613.1|2259948_2260701_+	lambdoid prophage Qin antitermination protein Q-like protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
VDY68614.1|2261122_2261335_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
VDY68615.1|2262452_2262572_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68616.1|2262613_2262820_+|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.1	4.5e-30
VDY68617.1|2262824_2263136_+	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
VDY68618.1|2263132_2263666_+	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
VDY68619.1|2263662_2264160_+	Qin prophage protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
2264132:2264147	attR	CTTTAAGAGATAAAAA	NA	NA	NA	NA
VDY68620.1|2265408_2265582_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
VDY68621.1|2265733_2266144_-	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
VDY68622.1|2266391_2266481_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68623.1|2266455_2269113_+|terminase	terminase GpA	terminase	A0A0K2FJ14	Enterobacteria_phage	100.0	0.0e+00
VDY68624.1|2269073_2271059_+|tail	phage tail domain-containing protein	tail	X2KTY7	Enterobacteria_phage	57.7	1.5e-186
VDY68625.1|2271731_2272322_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
>prophage 8
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	2485052	2493936	4644134	terminase,lysis	Escherichia_phage(44.44%)	14	NA	NA
VDY68802.1|2485052_2485427_-|terminase	terminase small subunit	terminase	A0A0U2RXW9	Escherichia_phage	90.2	1.5e-12
VDY68803.1|2485430_2485640_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68804.1|2485617_2486550_-	Uncharacterised protein	NA	A0A1B1INP7	uncultured_Mediterranean_phage	54.2	4.6e-82
VDY68805.1|2486542_2487331_-	ParB-like nuclease	NA	R4TG31	Halovirus	40.7	2.8e-48
VDY68806.1|2487468_2488893_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA	NA
VDY68807.1|2489063_2489528_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	95.4	1.6e-72
VDY68808.1|2489524_2490022_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	96.4	9.3e-90
VDY68809.1|2490021_2490237_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.4	1.3e-32
VDY68810.1|2490488_2490884_-	tolA protein (fragment) of prophage	NA	NA	NA	NA	NA
VDY68811.1|2491034_2491463_-	TolA protein (fragment) of prophage	NA	NA	NA	NA	NA
VDY68812.1|2492241_2492379_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68813.1|2492507_2493050_-	antitermination protein	NA	A0A0U2S606	Escherichia_phage	75.7	2.9e-76
VDY68814.1|2493046_2493337_-	phage protein	NA	A0A0U2KD41	Escherichia_phage	87.5	3.7e-46
VDY68815.1|2493336_2493936_-	phage protein	NA	A0A0U2RT94	Escherichia_phage	92.0	1.1e-105
>prophage 9
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	2499003	2512534	4644134	integrase,tRNA	Escherichia_phage(69.23%)	17	2493517:2493530	2511836:2511849
2493517:2493530	attL	ATAAATATGCTCGG	NA	NA	NA	NA
VDY68820.1|2499003_2499576_-	exclusion protein	NA	A0A0U2QQN3	Escherichia_phage	91.6	1.8e-60
VDY68821.1|2499641_2499776_+	Rac prophage protein	NA	NA	NA	NA	NA
VDY68822.1|2499786_2499942_+	Rac prophage; predicted protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
VDY68823.1|2499938_2500550_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA	NA
VDY68824.1|2500868_2501090_+	FtsZ inhibitor protein	NA	A0A0U2RTC4	Escherichia_phage	98.6	2.0e-36
VDY68825.1|2501089_2501260_+	Rac prophage; zinc-binding protein	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
VDY68826.1|2501334_2501610_+	putative bacteriophage protein	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
VDY68827.1|2501711_2504312_+	exonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	63.5	6.1e-249
VDY68828.1|2504304_2505114_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	4.0e-106
VDY68829.1|2505356_2505545_+	Rac prophage; predicted protein	NA	A0A0U2QL97	Escherichia_phage	98.4	5.5e-27
VDY68830.1|2505644_2505860_+	excisionase	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
VDY68831.1|2505861_2507097_+|integrase	phage integrase	integrase	A0A0U2JGI6	Escherichia_phage	99.3	1.9e-240
VDY68832.1|2507148_2508084_+|tRNA	C32 tRNA thiolase	tRNA	A0A0U2S5Z2	Escherichia_phage	98.4	1.7e-145
VDY68833.1|2508212_2509586_-	ATP-independent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
VDY68834.1|2509615_2509789_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY68835.1|2510063_2511047_-	zinc transport protein	NA	NA	NA	NA	NA
VDY68836.1|2511301_2512534_+	putative signaling protein	NA	A0A127AWB9	Bacillus_phage	38.8	1.2e-16
2511836:2511849	attR	ATAAATATGCTCGG	NA	NA	NA	NA
>prophage 10
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	3563153	3585944	4644134	terminase,integrase	Shigella_phage(52.0%)	30	3573953:3573969	3585217:3585233
VDY70171.1|3563153_3564479_+	putative pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.6	2.5e-113
VDY70173.1|3564835_3565429_+	inner membrane protein	NA	NA	NA	NA	NA
VDY70175.1|3566018_3566870_+	Putatve transcriptional regulator ykgA	NA	NA	NA	NA	NA
VDY70177.1|3566826_3566985_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY70179.1|3567009_3567249_-	attaching and effacing protein, pathogenesis factor	NA	NA	NA	NA	NA
VDY70181.1|3567232_3568477_-|terminase	phage terminase, large subunit	terminase	U5P0Q5	Shigella_phage	99.2	6.7e-238
VDY70183.1|3568473_3568968_-|terminase	phage terminase small subunit	terminase	U5P067	Shigella_phage	98.8	6.6e-88
VDY70185.1|3569093_3569444_-	putative phage endonuclease	NA	M1FQV2	Enterobacteria_phage	96.6	3.1e-63
VDY70187.1|3569969_3570263_+	lambdoid prophage DLP12 Bor-like protein	NA	K7PL54	Enterobacteria_phage	91.8	2.0e-44
VDY70189.1|3570294_3570756_-	Rz endopeptidase from lambdoid prophage DLP12	NA	A0A0K2FJD0	Enterobacteria_phage	98.7	9.2e-76
VDY70191.1|3570752_3571229_-	phage endolysin	NA	K7PKV2	Enterobacteria_phage	95.6	1.1e-84
VDY70193.1|3571232_3571568_-	Holin	NA	Q8SBE1	Shigella_phage	100.0	5.2e-60
VDY70196.1|3571644_3572697_-	DNA methylase	NA	A5LH81	Enterobacteria_phage	98.0	2.4e-204
VDY70198.1|3572846_3573041_-	lipoprotein	NA	Q8SBE3	Shigella_phage	93.8	3.7e-26
VDY70200.1|3573615_3574713_+	outer membrane porin; DLP12 prophage	NA	Q1MVN1	Enterobacteria_phage	77.6	1.2e-158
3573953:3573969	attL	TCGATTATGGTCGTAAC	NA	NA	NA	NA
VDY70202.1|3574900_3575284_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	80.8	5.7e-55
VDY70204.1|3575301_3575598_-	Crossover junction endodeoxyribonuclease rusA	NA	Q8SBE7	Shigella_phage	100.0	5.2e-32
VDY70206.1|3575594_3576011_-	putative LexA repressor	NA	A5LH73	Enterobacteria_phage	98.8	1.3e-39
VDY70208.1|3576108_3576735_+	Repressor protein C2	NA	K7PM82	Enterobacteria_phage	48.8	2.5e-47
VDY70210.1|3576982_3577189_+	putative prophage protein	NA	NA	NA	NA	NA
VDY70212.1|3577160_3577595_-	Uncharacterised protein	NA	U5P096	Shigella_phage	100.0	8.4e-79
VDY70213.1|3578063_3578426_+	CPS-53 (KpLE1) prophage protein	NA	U5P4J6	Shigella_phage	100.0	3.3e-60
VDY70215.1|3578491_3579316_+	CPS-53 (KpLE1) prophage protein	NA	U5P439	Shigella_phage	100.0	6.0e-150
VDY70217.1|3579443_3579980_+	CPS-53 (KpLE1) prophage protein	NA	U5P0T3	Shigella_phage	98.3	3.1e-99
VDY70219.1|3579970_3580333_+	CPS-53 (KpLE1) prophage protein	NA	U5P092	Shigella_phage	100.0	2.1e-67
VDY70221.1|3580332_3580638_+	CPS-53 (KpLE1) prophage protein	NA	U5P0J0	Shigella_phage	99.0	2.6e-50
VDY70223.1|3580864_3582028_+|integrase	prophage integrase	integrase	U5P434	Shigella_phage	100.0	2.4e-229
VDY70225.1|3582232_3583486_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
VDY70227.1|3583497_3584601_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
VDY70229.1|3584888_3585944_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	60.6	1.7e-117
3585217:3585233	attR	TCGATTATGGTCGTAAC	NA	NA	NA	NA
>prophage 11
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	3999404	4020572	4644134	transposase	Stx2-converting_phage(37.5%)	29	NA	NA
VDY70995.1|3999404_4000151_-|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
VDY70997.1|4000165_4001707_-|transposase	transposase for ISEc12	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
VDY70999.1|4001821_4002037_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY71001.1|4002051_4002477_-|transposase	transposase	transposase	NA	NA	NA	NA
VDY71003.1|4002840_4002996_-	putative restriction methylase	NA	NA	NA	NA	NA
VDY71005.1|4003098_4003275_-	Aec78	NA	NA	NA	NA	NA
VDY71007.1|4003291_4003780_-	aec77	NA	NA	NA	NA	NA
VDY71009.1|4003776_4004154_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA	NA
VDY71011.1|4004242_4004611_-	antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage	NA	NA	NA	NA	NA
VDY71013.1|4004660_4004774_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY71015.1|4004773_4004995_-	CP4-44 prophage	NA	A0A142F0X9	Klebsiella_phage	45.8	1.4e-10
VDY71017.1|4005057_4005534_-	putative DNA repair protein	NA	NA	NA	NA	NA
VDY71019.1|4005549_4006014_-	antirestriction protein	NA	A0A2D0W9W4	Bordetella_phage	34.0	1.2e-14
VDY71021.1|4006355_4007174_-	CP4-57 prophage protein	NA	A0A2C9CX26	Yersinia_phage	39.3	2.1e-46
VDY71023.1|4007328_4007487_-	putative plasmid-like protein	NA	NA	NA	NA	NA
VDY71025.1|4007557_4010404_-	putative antigen 43 precursor (fluffing protein)	NA	NA	NA	NA	NA
VDY71027.1|4010775_4011648_-	putative GTP-binding protein	NA	NA	NA	NA	NA
VDY71029.1|4011732_4012446_-	ybl124	NA	NA	NA	NA	NA
VDY71031.1|4012490_4012649_-	ybl124	NA	NA	NA	NA	NA
VDY71033.1|4013205_4013334_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY71035.1|4013849_4014452_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY71037.1|4014547_4014754_-	putative regulatory protein	NA	NA	NA	NA	NA
VDY71039.1|4016406_4016976_+	malate transporter	NA	NA	NA	NA	NA
VDY71041.1|4017235_4017637_+	ybl85	NA	NA	NA	NA	NA
VDY71043.1|4017624_4018059_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VDY71045.1|4018058_4018295_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY71047.1|4018413_4018794_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	99.2	7.1e-66
VDY71049.1|4018790_4019138_+|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	98.3	1.4e-60
VDY71051.1|4019153_4020572_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.2	1.3e-256
>prophage 12
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	4644134	4027936	4041421	4644134	transposase,integrase	Shigella_phage(30.0%)	12	4030819:4030833	4040591:4040605
VDY71063.1|4027936_4028311_-|transposase	putative transposase subunit	transposase	Q716C2	Shigella_phage	100.0	1.6e-70
VDY71065.1|4028505_4030029_-	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.7e-44
VDY71067.1|4030620_4030860_-	IS911 orfA	NA	Q716C2	Shigella_phage	100.0	1.5e-29
4030819:4030833	attL	CCCCAGCTCTTTCAT	NA	NA	NA	NA
VDY71069.1|4031137_4032478_-|transposase	transposase (fragment), IS110 family	transposase	Q9JMN8	Wolbachia_phage	47.5	7.5e-118
VDY71071.1|4032639_4032963_-	IS911 protein	NA	Q716C1	Shigella_phage	97.6	2.0e-37
VDY71073.1|4033019_4033286_-|integrase	prophage P4 integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	43.2	4.3e-09
VDY71075.1|4033298_4034138_-|integrase	phage integrase	integrase	Q7M297	Enterobacteria_phage	36.5	1.3e-51
VDY71077.1|4034691_4035711_+	oxidoreductase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	5.4e-44
VDY71079.1|4035839_4037342_+	ATPase	NA	A0A248XCZ8	Klebsiella_phage	44.6	1.8e-83
VDY71081.1|4037460_4038543_-	putative permease	NA	NA	NA	NA	NA
VDY71083.1|4038542_4039643_-	putative permease	NA	NA	NA	NA	NA
VDY71085.1|4039909_4041421_+	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
4040591:4040605	attR	ATGAAAGAGCTGGGG	NA	NA	NA	NA
