The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR133964	Klebsiella pneumoniae strain NCTC11359 genome assembly, chromosome: 1	5093886	1633209	1640114	5093886	protease	Planktothrix_phage(33.33%)	6	NA	NA
VDY59421.1|1633209_1634073_+	putative dipeptide ABC transport system ATP-binding component	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
VDY59422.1|1634083_1634857_+	dipeptide transport ATP-binding protein DppD	NA	G9BWD6	Planktothrix_phage	36.7	2.3e-26
VDY59423.1|1635097_1635994_-	transcription regulator	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
VDY59424.1|1636236_1637598_-|protease	protease	protease	Q6DW11	Phage_TP	94.8	1.8e-207
VDY59425.1|1637916_1638639_-	Response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
VDY59426.1|1638635_1640114_-	signal transduction histidine-protein kinase BaeS	NA	W8CYF6	Bacillus_phage	27.9	9.4e-29
>prophage 2
LR133964	Klebsiella pneumoniae strain NCTC11359 genome assembly, chromosome: 1	5093886	1682603	1703207	5093886	transposase	Shigella_phage(26.67%)	18	NA	NA
VDY59459.1|1682603_1684010_+	6-phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.5	1.5e-39
VDY59460.1|1684249_1685416_+	UDP-glucose dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	53.7	4.1e-112
VDY59461.1|1686340_1687261_-	IS2 element protein	NA	Q9ZXG3	Shigella_phage	82.1	1.5e-146
VDY59462.1|1687238_1687481_-	IS2 repressor TnpA	NA	Q76S41	Shigella_phage	97.4	1.9e-32
VDY59463.1|1687578_1688064_-|transposase	IS3 family element, transposase OrfB	transposase	S5WIU1	Leptospira_phage	45.3	1.7e-32
VDY59464.1|1689525_1690530_-	dTDP-glucose 4,6-dehydratase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	28.3	2.3e-31
VDY59465.1|1690625_1690742_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY59466.1|1692646_1692997_+|transposase	Putative transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	63.8	5.2e-39
VDY59467.1|1693027_1694620_+|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.8	3.2e-176
VDY59468.1|1694678_1694906_+	insertion sequence 2 OrfA protein	NA	Q76S41	Shigella_phage	100.0	5.3e-16
VDY59469.1|1694997_1695903_+|transposase	IS2 transposase	transposase	Q9ZXG3	Shigella_phage	94.7	5.3e-168
VDY59470.1|1696645_1697710_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	55.3	1.1e-103
VDY59471.1|1697727_1698630_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	69.1	4.9e-113
VDY59472.1|1698629_1699520_+	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	34.6	1.3e-28
VDY59473.1|1699534_1700089_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.1	1.6e-50
VDY59474.1|1700194_1701025_+	glycosyltransferase	NA	NA	NA	NA	NA
VDY59475.1|1701181_1701889_+	O-antigen export - TMD component	NA	NA	NA	NA	NA
VDY59476.1|1701878_1703207_+	O-antigen export - NBD component	NA	A0A2H4PQG7	Staphylococcus_phage	25.6	3.2e-12
>prophage 3
LR133964	Klebsiella pneumoniae strain NCTC11359 genome assembly, chromosome: 1	5093886	2628946	2639833	5093886		Escherichia_phage(87.5%)	9	NA	NA
VDY60362.1|2628946_2632054_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
VDY60363.1|2632108_2633374_+	putative proton/sugar symporter, LacY	NA	NA	NA	NA	NA
VDY60364.1|2633404_2634493_-	RecF/RecN/SMC domain protein	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
VDY60365.1|2634579_2634840_-	putative K+ transporting ATPase, KdpC subunit	NA	A0A077SK33	Escherichia_phage	98.8	5.4e-41
VDY60366.1|2635137_2635998_+	beta-lactamase	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
VDY60367.1|2636018_2636780_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
VDY60368.1|2637040_2637943_+	YgbJ	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
VDY60369.1|2637954_2639220_+	YgbK domain protein	NA	A0A077SLJ7	Escherichia_phage	98.8	4.3e-232
VDY60370.1|2639212_2639833_+	ribulose-5-phosphate 4-epimerase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 4
LR133964	Klebsiella pneumoniae strain NCTC11359 genome assembly, chromosome: 1	5093886	2884031	2925584	5093886	head,integrase,tail,terminase	Klebsiella_phage(22.73%)	50	2878138:2878153	2925760:2925775
2878138:2878153	attL	TATGCCCTACGATAGC	NA	NA	NA	NA
VDY60599.1|2884031_2884301_-	Uncharacterised protein	NA	A0A2H5BN44	Klebsiella_phage	87.4	5.1e-34
VDY60600.1|2884302_2886408_-	Uncharacterised protein	NA	A0A2H5BN52	Klebsiella_phage	90.3	7.7e-311
VDY60601.1|2886469_2889538_-	putative kinase	NA	A0A286S259	Klebsiella_phage	95.8	0.0e+00
VDY60602.1|2889534_2889915_-	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	98.4	6.7e-72
VDY60603.1|2889924_2890407_-	ArsR family transcriptional regulator	NA	A0A286S2B1	Klebsiella_phage	95.6	4.8e-83
VDY60604.1|2890587_2891052_-	alkanesulfonate ABC transporter permease	NA	A0A286S298	Klebsiella_phage	67.8	6.7e-58
VDY60605.1|2891051_2893952_-|tail	Prophage tail length tape measure	tail	A0A2H4J107	uncultured_Caudovirales_phage	32.8	1.6e-104
VDY60606.1|2894504_2894861_-	Uncharacterised protein	NA	A0A1V0E5P9	Salmonella_phage	75.0	1.1e-44
VDY60607.1|2894937_2895114_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY60608.1|2895281_2895764_-	ydaY	NA	NA	NA	NA	NA
VDY60609.1|2895817_2896990_-	putative membrane component of transport system	NA	A0A0D4DBN5	Acinetobacter_phage	27.0	1.2e-23
VDY60610.1|2897013_2897406_-	putative electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
VDY60611.1|2897402_2897954_-	Uncharacterised protein	NA	G8C7Q1	Escherichia_phage	39.9	7.8e-29
VDY60612.1|2897955_2898339_-	Uncharacterised protein	NA	A0A0S2SYG4	Pseudomonas_phage	45.2	7.1e-21
VDY60613.1|2898325_2898559_-	Uncharacterised protein	NA	A0A2H4J0Y9	uncultured_Caudovirales_phage	47.1	5.8e-10
VDY60614.1|2898568_2898823_-	Uncharacterised protein	NA	J9Q7U0	Salmonella_phage	52.4	8.0e-21
VDY60615.1|2898824_2899220_-	Uncharacterised protein	NA	A0A0S2SYB7	Pseudomonas_phage	43.3	3.3e-13
VDY60616.1|2899541_2900495_-	phage protein	NA	A0A1B0VMF8	Pseudomonas_phage	74.4	5.0e-132
VDY60617.1|2900505_2901291_-	phage protein	NA	A0A1B0VMG1	Pseudomonas_phage	63.9	1.7e-66
VDY60618.1|2901404_2901581_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY60619.1|2901821_2902934_-|head	phage head morphogenesis protein, SPP1 gp7 family	head	I6PD76	Cronobacter_phage	55.1	4.3e-111
VDY60620.1|2902917_2904318_-	Uncharacterised protein	NA	A0A1B0VMH0	Pseudomonas_phage	53.3	9.2e-127
VDY60621.1|2904317_2905625_-	Uncharacterized conserved protein	NA	A0A1B1P9C9	Acinetobacter_phage	58.9	1.8e-148
VDY60622.1|2905602_2906607_-|terminase	terminase small subunit	terminase	Q5QF76	Pseudomonas_virus	45.5	1.5e-38
VDY60623.1|2907695_2907971_-	Uncharacterised protein	NA	A0A286N2Q8	Klebsiella_phage	72.5	2.2e-08
VDY60624.1|2907967_2908312_-	Uncharacterised protein	NA	A0A286N2Q7	Klebsiella_phage	80.7	2.0e-38
VDY60625.1|2908308_2908848_-	Predicted lysozyme (DUF847)	NA	A0A286N2Q6	Klebsiella_phage	99.4	6.7e-102
VDY60626.1|2908844_2909156_-	drug/metabolite transporter (DMT) superfamily permease	NA	A0A286N2Q5	Klebsiella_phage	83.5	1.1e-40
VDY60627.1|2909902_2910724_-	putative late gene regulator	NA	K7PKS8	Enterobacteria_phage	67.1	4.0e-98
VDY60628.1|2910839_2911196_-	crossover junction endodeoxyribonuclease RusA family protein	NA	K7P6W0	Enterobacteria_phage	64.1	1.5e-41
VDY60629.1|2911192_2911495_-	82 prophage-derived uncharacterized protein ybcO	NA	A0A0U2KD41	Escherichia_phage	72.9	9.4e-37
VDY60630.1|2911697_2912297_-	Protein of uncharacterised function (DUF1367)	NA	K7PKS6	Enterobacteria_phage	79.9	1.3e-90
VDY60631.1|2912354_2912546_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY60632.1|2912626_2912920_-	insertion element protein	NA	U5P0U6	Shigella_phage	92.8	1.1e-45
VDY60633.1|2913048_2913324_-	ORF1 IS1	NA	Q71TE9	Escherichia_phage	96.7	7.7e-46
VDY60634.1|2913374_2913584_-	Uncharacterised protein	NA	S4TVX5	Salmonella_phage	51.6	2.5e-12
VDY60635.1|2913580_2913835_-	Uncharacterised protein	NA	S5MQM0	Escherichia_phage	50.7	5.3e-09
VDY60636.1|2913827_2914031_-	Uncharacterised protein	NA	A0A2R2Z313	Escherichia_phage	83.3	3.8e-26
VDY60637.1|2914027_2914813_-	PRTRC system ParB family protein	NA	C7BGF1	Burkholderia_phage	52.9	2.5e-65
VDY60638.1|2914805_2915141_-	Bacterial protein of uncharacterised function (DUF977)	NA	H6WRX9	Salmonella_phage	43.0	4.4e-11
VDY60639.1|2915133_2915877_-	Origin specific replication binding factor	NA	A0A0M3ULE2	Salmonella_phage	54.8	6.9e-65
VDY60640.1|2915873_2916734_-	phage replication protein O	NA	K7PGZ0	Enterobacteria_phage	60.4	2.9e-83
VDY60641.1|2917143_2917680_-	Protein of uncharacterised function (DUF1019)	NA	M9NZI6	Enterobacteria_phage	67.8	4.1e-59
VDY60642.1|2918625_2918934_+	regulatory protein	NA	G8C7T6	Escherichia_phage	62.2	1.7e-25
VDY60643.1|2919230_2919422_+	secreted protein	NA	NA	NA	NA	NA
VDY60644.1|2919430_2919586_+	Uncharacterised protein	NA	K7PGY4	Enterobacteria_phage	71.2	1.5e-14
VDY60645.1|2919723_2920857_+	putative exodeoxyribonuclease VIII	NA	K7PJT5	Enterobacteria_phage	55.0	3.3e-106
VDY60646.1|2920911_2922774_+	putative exodeoxyribonuclease VIII	NA	H6WRX1	Salmonella_phage	65.0	8.3e-192
VDY60647.1|2922786_2923896_+	recombinase, RecT family	NA	H6WRX0	Salmonella_phage	86.7	1.0e-184
VDY60648.1|2924396_2925584_-|integrase	phage integrase family site-specific recombinase	integrase	K7PGY1	Enterobacteria_phage	52.4	1.9e-120
2925760:2925775	attR	TATGCCCTACGATAGC	NA	NA	NA	NA
>prophage 5
LR133964	Klebsiella pneumoniae strain NCTC11359 genome assembly, chromosome: 1	5093886	3308136	3317600	5093886	protease	Brazilian_cedratvirus(16.67%)	8	NA	NA
VDY61005.1|3308136_3309858_+	transport ATP-binding protein CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
VDY61006.1|3309902_3310604_+	leucyltransferase	NA	NA	NA	NA	NA
VDY61007.1|3310957_3311176_+	translation initiation factor 1	NA	NA	NA	NA	NA
VDY61008.1|3311296_3313576_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
VDY61009.1|3313606_3313924_-|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
VDY61010.1|3314249_3314471_+	Cold shock protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
VDY61011.1|3314547_3316488_-	macrolide export ATP-binding/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
VDY61012.1|3316484_3317600_-	macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
