assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635105.1_36109_D01	LR133932	Klebsiella oxytoca strain NCTC11356 genome assembly, chromosome: 1	1	904727-904850	1	CRISPRCasFinder	no		RT,cas3,DEDDh,WYL,DinG,csa3	Orphan	GAGCTGTAGCCCCGGGAGCGTGAGTGCGGACGGTGG	36	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,WYL,DinG,csa3	NA,NA	NA|173aa|up_9|LR133932.1_895808_896327_-	pfam15941, FidL_like, FidL-like putative membrane protein	NA|267aa|up_8|LR133932.1_896323_897124_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|195aa|up_7|LR133932.1_897141_897726_-	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain	NA|261aa|up_6|LR133932.1_897873_898656_-	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|303aa|up_5|LR133932.1_898743_899652_+	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|148aa|up_4|LR133932.1_899645_900089_+	cd07244, FosA, fosfomycin resistant protein subfamily FosA	NA|448aa|up_3|LR133932.1_900128_901472_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|304aa|up_2|LR133932.1_901468_902380_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|475aa|up_1|LR133932.1_902845_904270_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|55aa|up_0|LR133932.1_904447_904612_+	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|155aa|down_0|LR133932.1_905043_905508_+	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|356aa|down_1|LR133932.1_905514_906582_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|355aa|down_2|LR133932.1_906571_907636_+	pfam11168, DUF2955, Protein of unknown function (DUF2955)	NA|305aa|down_3|LR133932.1_907638_908553_-	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|228aa|down_4|LR133932.1_908863_909547_+	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|156aa|down_5|LR133932.1_909539_910007_+	PRK10519, PRK10519, hypothetical protein; Provisional	NA|368aa|down_6|LR133932.1_910027_911131_+	cd08018, M20_Acy1_amhX-like, M20 Peptidase aminoacylase 1 amhX-like subfamily	NA|85aa|down_7|LR133932.1_911235_911490_-	pfam11823, DUF3343, Protein of unknown function (DUF3343)	NA|256aa|down_8|LR133932.1_911486_912254_-	TIGR00241, Uncharacterized_protein_MJ0004, CoA-substrate-specific enzyme activase, putative	NA|384aa|down_9|LR133932.1_912262_913414_-	COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
GCA_900635105.1_36109_D01	LR133932	Klebsiella oxytoca strain NCTC11356 genome assembly, chromosome: 1	2	2019075-2019145	2	CRISPRCasFinder	no		RT,cas3,DEDDh,WYL,DinG,csa3	Orphan	CTGCGCATCTGTCCGGGCTACCG	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,WYL,DinG,csa3	NA|218aa|up_9|LR133932.1_2009828_2010482_-,NA	NA|218aa|up_9|LR133932.1_2009828_2010482_-	NA	NA|140aa|up_8|LR133932.1_2010478_2010898_-	pfam03928, Haem_degrading, Haem-degrading	NA|448aa|up_7|LR133932.1_2010903_2012247_-	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]	NA|271aa|up_6|LR133932.1_2012268_2013081_-	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|259aa|up_5|LR133932.1_2013109_2013886_-	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]	NA|269aa|up_4|LR133932.1_2013866_2014673_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|215aa|up_3|LR133932.1_2014682_2015327_-	PRK08130, PRK08130, putative aldolase; Validated	NA|419aa|up_2|LR133932.1_2015323_2016580_-	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_1|LR133932.1_2016958_2017651_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|301aa|up_0|LR133932.1_2018033_2018936_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_0|LR133932.1_2019256_2019859_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_1|LR133932.1_2019868_2021521_-	PRK15392, PRK15392, class I fumarate hydratase	NA|334aa|down_2|LR133932.1_2021532_2022534_-	PRK12356, PRK12356, glutaminase; Reviewed	NA|436aa|down_3|LR133932.1_2022608_2023916_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_4|LR133932.1_2024280_2024598_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|457aa|down_5|LR133932.1_2024594_2025965_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|414aa|down_6|LR133932.1_2025968_2027210_-	COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport and metabolism]	NA|482aa|down_7|LR133932.1_2027209_2028655_-	TIGR01503, Glutamate_mutase_epsilon_subunit, methylaspartate mutase, E subunit	NA|463aa|down_8|LR133932.1_2028671_2030060_-	TIGR01319, glmL_fam, conserved hypothetical protein	NA|150aa|down_9|LR133932.1_2030059_2030509_-	PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional
GCA_900635105.1_36109_D01	LR133932	Klebsiella oxytoca strain NCTC11356 genome assembly, chromosome: 1	3	2255496-2255645	3	CRISPRCasFinder	no		RT,cas3,DEDDh,WYL,DinG,csa3	Orphan	TGTTCACTGCCGTACAGGCAGCTTAGAAA	29	0	0	NA	NA	I-F	2	2	Orphan	RT,cas3,DEDDh,WYL,DinG,csa3	NA,NA	NA|244aa|up_9|LR133932.1_2245700_2246432_-	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein	NA|243aa|up_8|LR133932.1_2246451_2247180_-	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional	NA|172aa|up_7|LR133932.1_2247504_2248020_-	PRK10533, PRK10533, putative lipoprotein; Provisional	NA|108aa|up_6|LR133932.1_2248137_2248461_+	PRK02877, PRK02877, hypothetical protein; Provisional	NA|277aa|up_5|LR133932.1_2248457_2249288_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|338aa|up_4|LR133932.1_2249284_2250298_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|478aa|up_3|LR133932.1_2250394_2251828_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|334aa|up_2|LR133932.1_2251838_2252840_-	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|573aa|up_1|LR133932.1_2252994_2254713_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|145aa|up_0|LR133932.1_2254865_2255300_+	pfam07681, DoxX, DoxX	NA|323aa|down_0|LR133932.1_2255692_2256661_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|551aa|down_1|LR133932.1_2256671_2258324_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|down_2|LR133932.1_2258467_2259367_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|down_3|LR133932.1_2259490_2260186_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|down_4|LR133932.1_2260567_2262226_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|372aa|down_5|LR133932.1_2262400_2263516_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|down_6|LR133932.1_2263512_2265459_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|77aa|down_7|LR133932.1_2265527_2265758_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|106aa|down_8|LR133932.1_2266082_2266400_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|761aa|down_9|LR133932.1_2266430_2268713_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional
GCA_900635105.1_36109_D01	LR133932	Klebsiella oxytoca strain NCTC11356 genome assembly, chromosome: 1	4	3621927-3622037	4	CRISPRCasFinder	no		RT,cas3,DEDDh,WYL,DinG,csa3	Orphan	CCTGTAGCCCGGGCAAGGCGCGGCCCTGCCGCGC	34	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,WYL,DinG,csa3	NA,NA	NA|241aa|up_9|LR133932.1_3612105_3612828_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|256aa|up_8|LR133932.1_3612811_3613579_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|257aa|up_7|LR133932.1_3613643_3614414_-	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|300aa|up_6|LR133932.1_3614509_3615409_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|316aa|up_5|LR133932.1_3615405_3616353_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|57aa|up_4|LR133932.1_3616369_3616540_-	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB	NA|294aa|up_3|LR133932.1_3616540_3617422_-	pfam01032, FecCD, FecCD transport family	NA|342aa|up_2|LR133932.1_3617418_3618444_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_1|LR133932.1_3618440_3619262_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|718aa|up_0|LR133932.1_3619687_3621841_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|263aa|down_0|LR133932.1_3622098_3622887_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|332aa|down_1|LR133932.1_3622880_3623876_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|346aa|down_2|LR133932.1_3623856_3624894_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|325aa|down_3|LR133932.1_3624890_3625865_-	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|382aa|down_4|LR133932.1_3625876_3627022_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|362aa|down_5|LR133932.1_3627018_3628104_-	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite	NA|298aa|down_6|LR133932.1_3628249_3629143_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|199aa|down_7|LR133932.1_3629250_3629847_+	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]	NA|527aa|down_8|LR133932.1_3629848_3631429_+	cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain superfamily, repeat 4	NA|468aa|down_9|LR133932.1_3631733_3633137_-	pfam09362, DUF1996, Domain of unknown function (DUF1996)
GCA_900635105.1_36109_D01	LR133932	Klebsiella oxytoca strain NCTC11356 genome assembly, chromosome: 1	5	5015803-5015908	5	CRISPRCasFinder	no	csa3	RT,cas3,DEDDh,WYL,DinG,csa3	Type I-A	TGCCCTCCTTTTGGAGGGCTTTTT	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,WYL,DinG,csa3	NA,NA	NA|429aa|up_9|LR133932.1_5001950_5003237_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|376aa|up_8|LR133932.1_5003308_5004436_+	pfam14583, Pectate_lyase22, Oligogalacturonate lyase	NA|341aa|up_7|LR133932.1_5004826_5005849_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|449aa|up_6|LR133932.1_5006161_5007508_-	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|478aa|up_5|LR133932.1_5007621_5009055_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|414aa|up_4|LR133932.1_5009073_5010315_-	PRK09528, lacY, galactoside permease; Reviewed	NA|332aa|up_3|LR133932.1_5010556_5011552_+	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors	NA|473aa|up_2|LR133932.1_5011552_5012971_-	TIGR00879, Membrane_transporter, MFS transporter, sugar porter (SP) family	NA|254aa|up_1|LR133932.1_5013282_5014044_-	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|392aa|up_0|LR133932.1_5014586_5015762_+	pfam14583, Pectate_lyase22, Oligogalacturonate lyase	NA|232aa|down_0|LR133932.1_5016096_5016792_-	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM)	NA|392aa|down_1|LR133932.1_5017035_5018211_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|291aa|down_2|LR133932.1_5018501_5019374_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|154aa|down_3|LR133932.1_5019470_5019932_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|410aa|down_4|LR133932.1_5020067_5021297_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|291aa|down_5|LR133932.1_5021412_5022285_+	PRK10376, PRK10376, putative oxidoreductase; Provisional	NA|234aa|down_6|LR133932.1_5022672_5023374_+	COG5581, COG5581, c-di-GMP-binding protein [Signal transduction mechanisms]	NA|195aa|down_7|LR133932.1_5023378_5023963_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|239aa|down_8|LR133932.1_5024102_5024819_+	PRK11596, PRK11596, cyclic-di-GMP phosphodiesterase; Provisional	NA|217aa|down_9|LR133932.1_5024877_5025528_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]
