assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	1	137913-137997	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	137939-137971|137939-137971|137939-137971	LR133917.1_1042443-1042411|LR133917.1_1320636-1320668|LR133917.1_1016014-1015982	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|402aa|up_9|LR133917.1_127058_128264_+,NA|68aa|down_0|LR133917.1_138058_138262_-	NA|402aa|up_9|LR133917.1_127058_128264_+	NA	NA|402aa|up_8|LR133917.1_128264_129470_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|LR133917.1_129480_130038_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|LR133917.1_130037_130925_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|LR133917.1_130978_132241_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|LR133917.1_132317_133463_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|LR133917.1_133527_133854_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|LR133917.1_133860_134244_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|LR133917.1_134670_136158_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|LR133917.1_136804_137764_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|LR133917.1_138058_138262_-	NA	NA|171aa|down_1|LR133917.1_138440_138953_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|LR133917.1_139294_140035_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|LR133917.1_140048_141023_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|LR133917.1_141019_141781_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_5|LR133917.1_141790_142825_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|LR133917.1_143041_143401_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|LR133917.1_143573_144599_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|LR133917.1_144984_146235_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|LR133917.1_146681_153857_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2	643617-643709	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|36aa|up_3|LR133917.1_640285_640393_+,NA|169aa|down_4|LR133917.1_647459_647966_+,NA|239aa|down_5|LR133917.1_648127_648844_+	NA|313aa|up_9|LR133917.1_634489_635428_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|LR133917.1_635636_636173_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|LR133917.1_636341_636818_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|LR133917.1_636857_638153_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|LR133917.1_638195_638702_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|LR133917.1_639200_640211_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|LR133917.1_640285_640393_+	NA	NA|139aa|up_2|LR133917.1_640485_640902_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|LR133917.1_640898_642560_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|LR133917.1_642829_643465_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|297aa|down_0|LR133917.1_643777_644668_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|LR133917.1_644779_645766_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|LR133917.1_645820_646540_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|LR133917.1_646523_647324_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|LR133917.1_647459_647966_+	NA	NA|239aa|down_5|LR133917.1_648127_648844_+	NA	NA|263aa|down_6|LR133917.1_649012_649801_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|LR133917.1_650050_650425_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|LR133917.1_651372_652302_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|LR133917.1_652496_652721_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	3	847647-847728	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	847671-847704	LR133917.1_1320668-1320635	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|38aa|up_1|LR133917.1_846549_846663_+,NA	NA|206aa|up_9|LR133917.1_841404_842022_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|LR133917.1_842176_842671_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|LR133917.1_843069_843492_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|LR133917.1_843639_844356_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|LR133917.1_844438_844978_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|LR133917.1_845127_845448_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|LR133917.1_845591_845948_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|LR133917.1_846105_846486_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|LR133917.1_846549_846663_+	NA	NA|293aa|up_0|LR133917.1_846664_847543_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LR133917.1_848393_848783_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LR133917.1_848775_849072_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LR133917.1_849321_850347_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LR133917.1_850339_851035_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LR133917.1_851052_851874_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|LR133917.1_852227_852422_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|LR133917.1_852654_853506_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|LR133917.1_853833_854595_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|LR133917.1_854692_856000_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|LR133917.1_856114_857356_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	4	1016003-1016085	4	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TGTTGGGGCCCATACCCCAACTTGCA	26	1	22	1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059|1016029-1016059	LR133917.1_112792-112762|LR133917.1_137924-137894|LR133917.1_246144-246174|LR133917.1_800083-800113|LR133917.1_805517-805547|LR133917.1_805575-805605|LR133917.1_847717-847747|LR133917.1_1042458-1042488|LR133917.1_1320563-1320533|LR133917.1_1408714-1408744|LR133917.1_1408772-1408802|LR133917.1_1920532-1920562|LR133917.1_2308555-2308525|LR133917.1_339585-339555|LR133917.1_812839-812869|LR133917.1_917543-917573|LR133917.1_1766213-1766183|LR133917.1_2463556-2463526|LR133917.1_339640-339610|LR133917.1_1116797-1116767|LR133917.1_1929879-1929909|LR133917.1_1929996-1930026	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA	NA|1257aa|up_9|LR133917.1_1002239_1006010_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|145aa|up_8|LR133917.1_1006237_1006672_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|157aa|up_7|LR133917.1_1006826_1007297_-	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|409aa|up_6|LR133917.1_1007344_1008571_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|398aa|up_5|LR133917.1_1009021_1010215_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|97aa|up_4|LR133917.1_1010751_1011042_-	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|202aa|up_3|LR133917.1_1011038_1011644_-	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|663aa|up_2|LR133917.1_1011633_1013622_-	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|367aa|up_1|LR133917.1_1013621_1014722_-	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|106aa|up_0|LR133917.1_1015293_1015611_-	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|287aa|down_0|LR133917.1_1016394_1017255_-	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|161aa|down_1|LR133917.1_1017455_1017938_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|375aa|down_2|LR133917.1_1017924_1019049_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|235aa|down_3|LR133917.1_1019052_1019757_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|88aa|down_4|LR133917.1_1019756_1020020_+	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|224aa|down_5|LR133917.1_1020021_1020693_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|down_6|LR133917.1_1020685_1022875_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|down_7|LR133917.1_1022853_1024338_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|down_8|LR133917.1_1024330_1025359_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|down_9|LR133917.1_1025361_1025928_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	5	1093937-1094028	5	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TATAATGATTAAAAATCAAAGAGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|359aa|up_7|LR133917.1_1084684_1085761_+,NA	NA|351aa|up_9|LR133917.1_1082740_1083793_-	COG5386, COG5386, Cell surface protein [Cell envelope biogenesis, outer membrane]	NA|228aa|up_8|LR133917.1_1084001_1084685_+	TIGR03656, IsdC, heme uptake protein IsdC	NA|359aa|up_7|LR133917.1_1084684_1085761_+	NA	NA|293aa|up_6|LR133917.1_1085757_1086636_+	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|323aa|up_5|LR133917.1_1086645_1087614_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|245aa|up_4|LR133917.1_1087675_1088410_+	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_3|LR133917.1_1088428_1088752_+	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|247aa|up_2|LR133917.1_1089135_1089876_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|353aa|up_1|LR133917.1_1090256_1091315_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|801aa|up_0|LR133917.1_1091314_1093717_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|89aa|down_0|LR133917.1_1095327_1095594_+	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|174aa|down_1|LR133917.1_1095594_1096116_+	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|571aa|down_2|LR133917.1_1096188_1097901_+	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|783aa|down_3|LR133917.1_1097910_1100259_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|105aa|down_4|LR133917.1_1100431_1100746_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|594aa|down_5|LR133917.1_1101070_1102852_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|205aa|down_6|LR133917.1_1103175_1103790_+	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|589aa|down_7|LR133917.1_1103841_1105608_+	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|272aa|down_8|LR133917.1_1105607_1106423_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|down_9|LR133917.1_1106658_1107459_+	PRK00865, PRK00865, glutamate racemase; Provisional
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	6	1116856-1116937	6	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|169aa|up_6|LR133917.1_1110812_1111319_+,NA|62aa|up_3|LR133917.1_1113118_1113304_-,NA|78aa|up_2|LR133917.1_1113925_1114159_-,NA|66aa|up_0|LR133917.1_1116397_1116595_+,NA|76aa|down_6|LR133917.1_1123950_1124178_+	NA|168aa|up_9|LR133917.1_1108050_1108554_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|110aa|up_8|LR133917.1_1109042_1109372_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_7|LR133917.1_1109740_1110142_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_6|LR133917.1_1110812_1111319_+	NA	NA|166aa|up_5|LR133917.1_1111577_1112075_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_4|LR133917.1_1112228_1112579_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_3|LR133917.1_1113118_1113304_-	NA	NA|78aa|up_2|LR133917.1_1113925_1114159_-	NA	NA|320aa|up_1|LR133917.1_1114635_1115595_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|66aa|up_0|LR133917.1_1116397_1116595_+	NA	NA|239aa|down_0|LR133917.1_1117152_1117869_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|LR133917.1_1117976_1118702_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|LR133917.1_1118796_1119522_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|LR133917.1_1119959_1120961_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|312aa|down_4|LR133917.1_1120980_1121916_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|LR133917.1_1122087_1123644_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|LR133917.1_1123950_1124178_+	NA	NA|316aa|down_7|LR133917.1_1124482_1125430_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|LR133917.1_1125678_1125867_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|LR133917.1_1126771_1126906_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	9	1708744-1708829	9	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGACCATGCAAGTTGGGGTGGG	28	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA	NA|454aa|up_9|LR133917.1_1695917_1697279_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|341aa|up_8|LR133917.1_1697626_1698649_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|96aa|up_7|LR133917.1_1698650_1698938_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|159aa|up_6|LR133917.1_1698909_1699386_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|LR133917.1_1699407_1700376_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|LR133917.1_1700644_1701589_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|LR133917.1_1701588_1702446_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|LR133917.1_1702640_1703870_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|LR133917.1_1704319_1707517_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|LR133917.1_1707537_1708479_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|LR133917.1_1708932_1710231_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|LR133917.1_1710435_1710849_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|LR133917.1_1711153_1711843_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|LR133917.1_1712017_1713073_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|LR133917.1_1713388_1714507_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|LR133917.1_1714647_1715148_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|LR133917.1_1715393_1716596_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|LR133917.1_1716683_1717631_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|LR133917.1_1717753_1718248_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|LR133917.1_1718345_1719116_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	10	1766214-1766302	10	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TGCAAGTTGGGGTAAGGGCCCCAACACAGA	30	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA	NA|199aa|up_9|LR133917.1_1756779_1757376_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|LR133917.1_1757404_1758262_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|LR133917.1_1758361_1758673_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|LR133917.1_1758737_1759814_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|105aa|up_5|LR133917.1_1759897_1760212_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|295aa|up_4|LR133917.1_1760336_1761221_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|LR133917.1_1761648_1762293_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|LR133917.1_1762307_1763099_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|LR133917.1_1763648_1764497_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|LR133917.1_1764500_1765910_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|LR133917.1_1766605_1767028_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|LR133917.1_1767044_1767740_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|LR133917.1_1767736_1769398_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|LR133917.1_1769804_1771073_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|LR133917.1_1771189_1777750_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|LR133917.1_1778075_1778387_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|LR133917.1_1778408_1780826_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|LR133917.1_1781113_1782295_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|LR133917.1_1782404_1783358_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|LR133917.1_1783354_1783918_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	11	2151451-2151540	11	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|77aa|up_5|LR133917.1_2146322_2146553_-,NA|364aa|up_0|LR133917.1_2150342_2151434_+,NA	NA|237aa|up_9|LR133917.1_2141933_2142644_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LR133917.1_2142764_2143208_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LR133917.1_2143407_2143821_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LR133917.1_2144277_2145651_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LR133917.1_2146322_2146553_-	NA	NA|313aa|up_4|LR133917.1_2146583_2147522_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LR133917.1_2147957_2148623_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LR133917.1_2148774_2149095_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LR133917.1_2149096_2150077_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LR133917.1_2150342_2151434_+	NA	NA|286aa|down_0|LR133917.1_2153475_2154333_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_1|LR133917.1_2154400_2155183_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_2|LR133917.1_2155414_2157220_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_3|LR133917.1_2157900_2159439_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_4|LR133917.1_2159473_2161606_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_5|LR133917.1_2161617_2162052_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_6|LR133917.1_2162051_2163158_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2503aa|down_7|LR133917.1_2163476_2170985_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|452aa|down_8|LR133917.1_2171270_2172626_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_9|LR133917.1_2172652_2173585_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_900635095.1_33763_A01	LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	13	2463545-2463631	13	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGACAATGCAAGTTGGGGTGGG	28	1	10	2463573-2463603|2463573-2463603|2463573-2463603|2463573-2463603|2463573-2463603|2463573-2463603|2463573-2463603|2463573-2463603|2463573-2463603|2463573-2463603	LR133917.1_112808-112838|LR133917.1_805387-805357|LR133917.1_1042441-1042411|LR133917.1_1320638-1320668|LR133917.1_1920632-1920602|LR133917.1_2308628-2308658|LR133917.1_2713069-2713039|LR133917.1_805675-805645|LR133917.1_1016012-1015982|LR133917.1_1590161-1590131	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA|250aa|down_9|LR133917.1_2473333_2474083_+	NA|499aa|up_9|LR133917.1_2451077_2452574_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|284aa|up_8|LR133917.1_2452664_2453516_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|312aa|up_7|LR133917.1_2453837_2454773_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|467aa|up_6|LR133917.1_2454998_2456399_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|232aa|up_5|LR133917.1_2456683_2457379_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|314aa|up_4|LR133917.1_2457378_2458320_-	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold	NA|212aa|up_3|LR133917.1_2458336_2458972_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|409aa|up_2|LR133917.1_2458968_2460195_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|200aa|up_1|LR133917.1_2460864_2461464_-	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown]	NA|546aa|up_0|LR133917.1_2461643_2463281_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|451aa|down_0|LR133917.1_2463947_2465300_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|396aa|down_1|LR133917.1_2465361_2466549_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|259aa|down_2|LR133917.1_2466944_2467721_-	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|221aa|down_3|LR133917.1_2467713_2468376_-	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|359aa|down_4|LR133917.1_2468623_2469700_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|89aa|down_5|LR133917.1_2470055_2470322_-	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown]	NA|86aa|down_6|LR133917.1_2470321_2470579_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|152aa|down_7|LR133917.1_2470938_2471394_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|526aa|down_8|LR133917.1_2471561_2473139_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|250aa|down_9|LR133917.1_2473333_2474083_+	NA
