The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	362885	378752	2749900	transposase,terminase	Staphylococcus_phage(85.71%)	27	NA	NA
VDY47310.1|362885_363077_-	Uncharacterised protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
VDY47311.1|363320_363617_+	30S ribosomalprotein S6p	NA	NA	NA	NA	NA
VDY47312.1|363637_364141_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
VDY47313.1|364192_364435_+	30S ribosomalprotein S18p	NA	NA	NA	NA	NA
VDY47314.1|364616_365447_-	KilA-N domain	NA	Q4ZC41	Staphylococcus_virus	72.6	3.4e-113
VDY47315.1|365465_365933_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY47316.1|365929_367147_-	Integrase	NA	Q4ZE80	Staphylococcus_phage	98.0	2.1e-220
VDY47317.1|367172_368096_-	Xre family transcriptional regulator	NA	Q4ZC20	Staphylococcus_virus	43.1	2.2e-07
VDY47318.1|368202_368403_+	Ps3 protein 14 family transcriptional regulator	NA	NA	NA	NA	NA
VDY47319.1|368441_368654_+	pathogenicity island protein	NA	Q4ZE78	Staphylococcus_phage	71.4	3.0e-21
VDY47320.1|368654_368927_+	pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	93.3	2.1e-43
VDY47321.1|368938_369112_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VDY47322.1|369078_369282_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	94.0	1.1e-28
VDY47323.1|369283_369667_+	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	97.6	2.0e-63
VDY47324.1|369667_369988_+	mobile element-associated DUF1474-containing protein, putative	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	1.2e-18
VDY47325.1|370053_370923_+	pathogenicity island protein	NA	A0A1W6JQL5	Staphylococcus_phage	94.5	2.8e-158
VDY47326.1|370939_372409_+	pathogenicity island protein	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	1.6e-278
VDY47327.1|372687_373050_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.8	4.6e-62
VDY47328.1|373051_373315_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDY47329.1|373316_373958_+|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	93.0	4.7e-110
VDY47330.1|374493_374835_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
VDY47331.1|374865_375519_+	Uncharacterised protein	NA	Q4ZE82	Staphylococcus_phage	100.0	9.0e-117
VDY47332.1|375571_376099_+	pathogenicity island protein	NA	A0A1W6JQH7	Staphylococcus_phage	96.0	3.0e-86
VDY47333.1|376101_376443_+|transposase	transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
VDY47334.1|376439_377009_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	97.9	3.5e-101
VDY47335.1|377316_378117_+	enterotoxin B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	46.5	1.9e-52
VDY47336.1|378194_378752_-	Secreted protein Ear, superantigen-encodingpathogenicity islands SaPI	NA	A0A1W6JQE5	Staphylococcus_phage	74.9	9.2e-70
>prophage 2
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	737599	745419	2749900		Hokovirus(16.67%)	10	NA	NA
VDY47657.1|737599_738655_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VDY47658.1|738654_739341_-	Response regulator SaeR	NA	NA	NA	NA	NA
VDY47659.1|739315_739789_-	DoxX family protein	NA	NA	NA	NA	NA
VDY47660.1|740130_740571_-	lipoprotein	NA	NA	NA	NA	NA
VDY47661.1|740850_741435_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY47662.1|741533_742247_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
VDY47663.1|742250_742670_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
VDY47664.1|742671_743340_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VDY47665.1|743690_744284_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
VDY47666.1|744267_745419_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	2.7e-23
>prophage 3
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	757392	771679	2749900		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
VDY47677.1|757392_758451_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
VDY47678.1|758324_758606_-	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA	NA
VDY47679.1|758745_759288_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VDY47680.1|759855_760773_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
VDY47681.1|761043_762549_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VDY47682.1|762889_763390_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
VDY47683.1|763409_764276_-	Integral membrane domain protein	NA	NA	NA	NA	NA
VDY47684.1|765076_765475_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
VDY47685.1|765437_767543_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
VDY47686.1|767660_768632_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	5.5e-171
VDY47687.1|768964_769978_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
VDY47688.1|769964_770921_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
VDY47689.1|770917_771679_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	3.8e-18
>prophage 4
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	1017455	1025928	2749900		Synechococcus_phage(33.33%)	9	NA	NA
VDY47920.1|1017455_1017938_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
VDY47921.1|1017924_1019049_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
VDY47922.1|1019052_1019757_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
VDY47923.1|1019756_1020020_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VDY47924.1|1020021_1020693_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VDY47925.1|1020685_1022875_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
VDY47926.1|1022853_1024338_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
VDY47927.1|1024330_1025359_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	2.9e-61
VDY47928.1|1025361_1025928_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	1561735	1570048	2749900	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
VDY48401.1|1561735_1562521_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
VDY48402.1|1562646_1563498_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.3e-26
VDY48403.1|1563547_1564894_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
VDY48404.1|1565007_1566108_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
VDY48405.1|1566110_1566788_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VDY48406.1|1566918_1568025_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
VDY48407.1|1568248_1570048_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.0e-53
>prophage 6
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	1637883	1646926	2749900	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VDY48479.1|1637883_1638402_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	6.2e-28
VDY48480.1|1638423_1640697_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
VDY48481.1|1640899_1643179_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
VDY48482.1|1643453_1643714_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
VDY48483.1|1643732_1644872_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
VDY48484.1|1644894_1645920_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VDY48485.1|1645921_1646926_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	1761648	1879484	2749900	tRNA,transposase,bacteriocin,protease	Staphylococcus_phage(92.54%)	112	NA	NA
VDY48584.1|1761648_1762293_-|tRNA	tRNA (guanine46-N7-)-methyltransferase	tRNA	NA	NA	NA	NA
VDY48585.1|1762307_1763099_-	phosphotransferase enzyme family	NA	NA	NA	NA	NA
VDY48586.1|1763648_1764497_-	D-alanine aminotransferase	NA	NA	NA	NA	NA
VDY48587.1|1764500_1765910_-	Xaa-His dipeptidase	NA	NA	NA	NA	NA
VDY48588.1|1766605_1767028_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDY48589.1|1767044_1767740_-	16S pseudouridine synthase A	NA	NA	NA	NA	NA
VDY48590.1|1767736_1769398_-	spore cortex protein; Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	NA	NA	NA	NA	NA
VDY48591.1|1769804_1771073_+	NAD(FAD)-utilizing dehydrogenase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
VDY48592.1|1771189_1777750_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	96.0	1.3e-303
VDY48593.1|1778075_1778387_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
VDY48594.1|1778408_1780826_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
VDY48595.1|1781113_1782295_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
VDY48596.1|1782404_1783358_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
VDY48597.1|1783354_1783918_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
VDY48598.1|1784037_1784439_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VDY48599.1|1785009_1785837_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VDY48600.1|1786070_1787072_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
VDY48601.1|1787193_1787658_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
VDY48602.1|1787670_1788852_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	5.1e-227
VDY48603.1|1788862_1789495_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
VDY48604.1|1789501_1790545_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
VDY48605.1|1791025_1792528_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
VDY48606.1|1792550_1792670_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY48607.1|1793051_1793366_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	4.4e-53
VDY48608.1|1793365_1794658_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
VDY48609.1|1794675_1795071_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
VDY48610.1|1795365_1796220_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VDY48611.1|1796495_1796720_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDY48612.1|1796918_1797389_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
VDY48613.1|1797501_1797945_+	comK family protein	NA	NA	NA	NA	NA
VDY48614.1|1797931_1798375_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	100.0	3.7e-58
VDY48615.1|1798670_1799306_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VDY48616.1|1799745_1800459_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
VDY48617.1|1800718_1801021_+	membrane protein	NA	NA	NA	NA	NA
VDY48618.1|1801276_1801642_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	4.8e-59
VDY48619.1|1801638_1801992_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	92.3	8.2e-16
VDY48620.1|1802375_1803209_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	2.1e-158
VDY48621.1|1803420_1804329_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
VDY48622.1|1804453_1805647_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
VDY48623.1|1806017_1807610_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
VDY48624.1|1807987_1808758_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	6.6e-143
VDY48625.1|1808738_1809218_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
VDY48626.1|1809277_1809535_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
VDY48627.1|1809531_1810533_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	7.7e-184
VDY48628.1|1810537_1812016_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	6.9e-282
VDY48629.1|1812174_1812657_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
VDY48630.1|1812968_1813583_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	68.5	6.4e-24
VDY48631.1|1813663_1814659_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	95.2	7.9e-72
VDY48632.1|1814733_1815360_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	96.2	3.5e-94
VDY48633.1|1815400_1815742_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
VDY48634.1|1815842_1816415_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
VDY48635.1|1816613_1817183_-|transposase	truncated transposase	transposase	A0A2I7SC85	Paenibacillus_phage	56.8	1.3e-55
VDY48636.1|1817533_1817626_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	87.5	3.7e-05
VDY48637.1|1818213_1818714_-|transposase	transposase for IS232 (Insertion sequence IS1181)	transposase	NA	NA	NA	NA
VDY48638.1|1819165_1820395_-	Type I restriction-modification system, specificity subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.2	2.9e-132
VDY48639.1|1820387_1821944_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	95.6	2.7e-284
VDY48640.1|1822309_1823029_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	3.2e-131
VDY48641.1|1823178_1823895_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
VDY48642.1|1824052_1824772_-|protease	Serine protease splD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	1.2e-127
VDY48643.1|1824892_1825612_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	6.0e-130
VDY48644.1|1825669_1826392_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	1.9e-131
VDY48645.1|1826516_1827209_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.4	3.1e-123
VDY48646.1|1828186_1828753_+	probable beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	7.3e-99
VDY48647.1|1829226_1829925_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
VDY48648.1|1829921_1830683_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
VDY48649.1|1830679_1831372_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
VDY48650.1|1831394_1832768_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
VDY48651.1|1832777_1833296_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
VDY48652.1|1833311_1834556_-	lanthionine synthetase C-like family protein	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	1.5e-237
VDY48653.1|1834548_1837542_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.2	0.0e+00
VDY48654.1|1837606_1837750_-	lantibiotic gallidermin	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
VDY48655.1|1839051_1840035_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
VDY48656.1|1840036_1840972_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
VDY48657.1|1841866_1841965_+	[Genomic island nu Sa beta2]	NA	A0A2H4PQI6	Staphylococcus_phage	96.9	3.1e-10
VDY48658.1|1842333_1843122_+	Domain of uncharacterised function DUF1828	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.3e-138
VDY48659.1|1843955_1844450_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY48660.1|1844527_1844764_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY48661.1|1844784_1845561_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
VDY48662.1|1846112_1846889_-	extracellular enterotoxin type G precursor	NA	NA	NA	NA	NA
VDY48663.1|1847171_1847927_-	enterotoxin SeN	NA	A0A075M4C7	Staphylococcus_phage	41.0	1.0e-39
VDY48664.1|1847965_1848736_-	enterotoxin Seu	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.2	1.4e-44
VDY48665.1|1848889_1849618_-	extracellular enterotoxin type I precursor	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
VDY48666.1|1849652_1850372_-	enterotoxin SEM	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
VDY48667.1|1850652_1851417_-	enterotoxin SeO	NA	A0A1X9H080	Staphylococcus_phage	37.1	2.3e-31
VDY48668.1|1852785_1853340_-	Putative hydrolase ydeN	NA	NA	NA	NA	NA
VDY48669.1|1853660_1855061_-	Protoporphyrinogen IX oxidase, aerobic	NA	NA	NA	NA	NA
VDY48670.1|1855084_1856008_-	Ferrochelatase, protoheme ferro-lyase	NA	NA	NA	NA	NA
VDY48671.1|1856065_1857103_-	Uroporphyrinogen III decarboxylase	NA	NA	NA	NA	NA
VDY48672.1|1857365_1857869_+	signal transduction protein TRAP	NA	NA	NA	NA	NA
VDY48673.1|1857992_1859216_-	EcsB	NA	NA	NA	NA	NA
VDY48674.1|1859208_1859949_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.0e-24
VDY48675.1|1860082_1860505_+	adenosine 5'-monophosphoramidase	NA	NA	NA	NA	NA
VDY48676.1|1860646_1861012_+	gas vesicle protein-protein	NA	NA	NA	NA	NA
VDY48677.1|1861744_1862302_+	membrane protein	NA	NA	NA	NA	NA
VDY48678.1|1862506_1863469_+	Foldase protein PrsA precursor	NA	NA	NA	NA	NA
VDY48679.1|1863589_1864531_-	CMP-binding-factor 1	NA	NA	NA	NA	NA
VDY48680.1|1864527_1865484_-	membrane associated protein	NA	NA	NA	NA	NA
VDY48681.1|1865455_1866136_-	membrane associated protein	NA	NA	NA	NA	NA
VDY48682.1|1866341_1867466_-	membrane associated protein	NA	NA	NA	NA	NA
VDY48683.1|1867455_1868652_-	DNA repair exonuclease family protein YhaO	NA	NA	NA	NA	NA
VDY48684.1|1869533_1869878_-	putative transcriptional regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
VDY48685.1|1869946_1871071_-	membrane protein	NA	NA	NA	NA	NA
VDY48686.1|1871249_1871714_-	HTH domain protein, binds to mecA promoter region	NA	NA	NA	NA	NA
VDY48687.1|1872069_1872693_-	Two-component response regulator-like protein	NA	NA	NA	NA	NA
VDY48688.1|1872714_1873827_-	Two-component sensor protein	NA	NA	NA	NA	NA
VDY48689.1|1873989_1874811_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
VDY48690.1|1875271_1876657_-	Fumarate hydratase class II	NA	NA	NA	NA	NA
VDY48691.1|1876852_1877248_-	membrane protein	NA	NA	NA	NA	NA
VDY48692.1|1877528_1877825_+	nitrogen regulation protein NIFR3	NA	NA	NA	NA	NA
VDY48693.1|1878078_1878231_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDY48694.1|1878255_1878855_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
VDY48695.1|1879013_1879484_-|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 8
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	2749900	1930588	2019943	2749900	holin,protease,terminase,tRNA,head,capsid,tail,portal	Staphylococcus_phage(91.25%)	110	NA	NA
VDY48739.1|1930588_1932016_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
VDY48740.1|1932028_1933486_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
VDY48741.1|1933487_1933790_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
VDY48742.1|1934156_1935695_+	Sodium/proline symporter	NA	NA	NA	NA	NA
VDY48743.1|1935783_1936983_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
VDY48744.1|1936995_1938999_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
VDY48745.1|1939002_1941195_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
VDY48746.1|1941191_1941884_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
VDY48747.1|1942055_1942358_-	His repressor	NA	NA	NA	NA	NA
VDY48748.1|1942466_1943762_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
VDY48749.1|1944622_1945789_+	Staphopain A precursor	NA	NA	NA	NA	NA
VDY48750.1|1945819_1946146_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
VDY48751.1|1946437_1946611_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY48752.1|1946591_1947194_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
VDY48753.1|1947464_1948286_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
VDY48754.1|1948278_1949748_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
VDY48755.1|1949931_1951008_+	nitric-oxide synthase	NA	NA	NA	NA	NA
VDY48756.1|1951027_1951822_+	ACT domain protein	NA	NA	NA	NA	NA
VDY48757.1|1952011_1953574_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
VDY48758.1|1953777_1954875_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
VDY48759.1|1955246_1955807_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
VDY48760.1|1955859_1956789_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
VDY48761.1|1957206_1958586_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
VDY48762.1|1958705_1959734_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
VDY48763.1|1960003_1960405_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
VDY48764.1|1960977_1961151_-	exported protein	NA	NA	NA	NA	NA
VDY48765.1|1961529_1962642_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
VDY48766.1|1962698_1963541_-	exported protein	NA	NA	NA	NA	NA
VDY48767.1|1963537_1964095_-	Predicted membrane protein	NA	NA	NA	NA	NA
VDY48768.1|1964154_1964679_-	membrane protein	NA	NA	NA	NA	NA
VDY48769.1|1964799_1965363_+	Thioredoxin	NA	NA	NA	NA	NA
VDY48770.1|1965428_1966169_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
VDY48771.1|1966168_1967041_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
VDY48772.1|1967037_1967718_-	membrane protein	NA	NA	NA	NA	NA
VDY48773.1|1967718_1968615_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
VDY48774.1|1968611_1968992_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VDY48775.1|1969250_1969427_-	membrane protein	NA	NA	NA	NA	NA
VDY48776.1|1969967_1971254_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
VDY48777.1|1971532_1971823_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA	NA
VDY48778.1|1971833_1973267_-	Outer membrane protein	NA	NA	NA	NA	NA
VDY48779.1|1973652_1973853_+	beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
VDY48780.1|1975026_1975377_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
VDY48781.1|1976059_1976509_+	Chemotaxis-inhibiting protein CHIPS, phage associated	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
VDY48782.1|1976603_1976900_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
VDY48783.1|1977588_1978080_-	Staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
VDY48784.1|1978270_1979026_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
VDY48785.1|1979037_1979292_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VDY48786.1|1979829_1980060_-	phage protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
VDY48787.1|1980183_1980471_-	phage protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
VDY48788.1|1980517_1980670_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
VDY48789.1|1980659_1984445_-	phage minor structural protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.9	0.0e+00
VDY48790.1|1984460_1985951_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
VDY48791.1|1985950_1990603_-|tail	phage tail tape measure protein, TP901 family, core region	tail	Q8SDK4	Staphylococcus_phage	100.0	0.0e+00
VDY48792.1|1990840_1991287_-	Bacteriophage	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
VDY48793.1|1991351_1992305_-|tail	phage major tail, phi13 family protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
VDY48794.1|1992305_1992686_-	phi PVL orf 12-like protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
VDY48795.1|1992682_1993060_-	gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	99.2	1.5e-60
VDY48796.1|1993059_1993395_-|head,tail	phage head-tail adaptor	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
VDY48797.1|1993381_1993714_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A1W6JPZ6	Staphylococcus_phage	100.0	2.1e-58
VDY48798.1|1993722_1993881_-	Bacteriophage	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
VDY48799.1|1993916_1995164_-|capsid	phage major capsid protein, HK97 family	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
VDY48800.1|1995251_1995836_-|head,protease	prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
VDY48801.1|1995828_1997079_-|portal	portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
VDY48802.1|1997084_1997324_-	phi PVL orf 3-like protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
VDY48803.1|1997298_1998993_-	phage Terminase family protein	NA	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
VDY48804.1|1998995_1999463_-|terminase	phage terminase small subunit	terminase	D2JLE3	Staphylococcus_phage	99.4	3.3e-81
VDY48805.1|1999592_1999946_-	phage endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	1.3e-66
VDY48806.1|1999952_2000405_-	hypothetical phage-related protein	NA	A0A1W6JQ01	Staphylococcus_phage	100.0	3.6e-80
VDY48807.1|2000519_2000972_-	Phage protein	NA	A7TWB6	Staphylococcus_phage	100.0	1.6e-72
VDY48808.1|2000994_2001195_-	phage protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
VDY48809.1|2001194_2001344_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
VDY48810.1|2001340_2001547_-	Protein of uncharacterised function (DUF1381)	NA	A0A1W6JPY0	Staphylococcus_phage	100.0	1.9e-20
VDY48811.1|2001563_2001737_-	Uncharacterised protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
VDY48812.1|2001773_2002310_-	dUTPase family protein	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
VDY48813.1|2002302_2002473_-	phage protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
VDY48814.1|2002459_2002714_-	phi PVL/orf 52-like protein	NA	A0A1W6JQ06	Staphylococcus_phage	100.0	1.9e-38
VDY48815.1|2002706_2003096_-	PV83 orf 27-like protein	NA	A0A1W6JPV7	Staphylococcus_phage	100.0	3.5e-68
VDY48816.1|2003092_2003437_-	yopX family protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	2.2e-58
VDY48817.1|2003503_2003752_-	phage family protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
VDY48818.1|2003752_2004124_-	PVL ORF-50-like family protein	NA	A0A1W6JPY5	Staphylococcus_phage	100.0	7.5e-52
VDY48819.1|2004124_2004310_-	PV83 orf 23-like protein	NA	A0A1W6JPY2	Staphylococcus_phage	100.0	8.3e-28
VDY48820.1|2004314_2004719_-	putative phi ETA-like protein	NA	A0A1W6JPX0	Staphylococcus_phage	100.0	3.6e-68
VDY48821.1|2004729_2004951_-	putative phi ETA-like protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
VDY48822.1|2004963_2005122_-	Uncharacterised protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
VDY48823.1|2005115_2005895_-	phage like DNA replication protein dnaC	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
VDY48824.1|2005904_2006675_-	phi ETA orf 22-like protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
VDY48825.1|2006740_2007022_+	Uncharacterised protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
VDY48826.1|2007014_2007164_-	Uncharacterised protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
VDY48827.1|2007160_2007832_-	phi PV83 orf 19-like protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
VDY48828.1|2007844_2008396_-	phi ETA orf 18-like protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
VDY48829.1|2008426_2009206_-	Uncharacterised protein	NA	A0A1W6JPW0	Staphylococcus_phage	100.0	3.3e-142
VDY48830.1|2009198_2009420_-	phage protein	NA	A0A1W6JQ25	Staphylococcus_phage	100.0	9.3e-34
VDY48831.1|2009429_2009690_-	putative phi PVL-like protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
VDY48832.1|2009782_2009944_-	phage protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
VDY48833.1|2009940_2010261_-	Uncharacterized protein conserved in bacteria	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
VDY48834.1|2010319_2010952_+	phage protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
VDY48835.1|2010966_2011107_-	phage protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
VDY48836.1|2011137_2011335_-	Phage protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
VDY48837.1|2011350_2012100_-	putative phage anti-repressor protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
VDY48838.1|2012156_2012696_+	putative phi PVL-like protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
VDY48839.1|2012719_2012980_-	putative phi PVL-like protein	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
VDY48840.1|2012997_2013222_-	putative cro repressor	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
VDY48841.1|2013380_2014151_+	putative phage PVL repressor protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
VDY48842.1|2014350_2014533_+	Putative cytosolic protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
VDY48843.1|2014589_2014715_+	ORF136	NA	A0A2I6PF02	Staphylococcus_phage	100.0	5.1e-13
VDY48844.1|2014711_2015326_-	phi PVL ORF 30-like protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
VDY48845.1|2015433_2016471_+	DNA integration/recombination/inversion protein	NA	A7TWL3	Staphylococcus_phage	99.7	1.7e-178
VDY48846.1|2016527_2017352_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
VDY48847.1|2017852_2018869_-	gamma-hemolysin component B	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
VDY48848.1|2018890_2019943_-	Leukocidin S subunit	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
