assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900618295.1_ecoli019	LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	1	522954-523103	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|50aa|up_9|LR130532.1_513546_513696_-,NA|154aa|up_6|LR130532.1_515153_515615_+,NA	NA|50aa|up_9|LR130532.1_513546_513696_-	NA	NA|120aa|up_8|LR130532.1_513913_514273_+	PRK09413, PRK09413, IS2 repressor TnpA; Reviewed	NA|300aa|up_7|LR130532.1_514236_515136_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|154aa|up_6|LR130532.1_515153_515615_+	NA	NA|338aa|up_5|LR130532.1_515904_516918_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|LR130532.1_517079_517496_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|LR130532.1_517541_518045_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|LR130532.1_518237_519434_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|LR130532.1_519487_522343_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|LR130532.1_522342_522786_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|LR130532.1_523139_524651_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|LR130532.1_524917_526018_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|LR130532.1_526017_527100_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|LR130532.1_527260_528763_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|LR130532.1_528840_529839_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|LR130532.1_529905_531225_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|LR130532.1_531287_532052_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|LR130532.1_532075_533107_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|LR130532.1_533323_533887_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|LR130532.1_533890_534910_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCA_900618295.1_ecoli019	LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	2	1287987-1288083	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|454aa|up_9|LR130532.1_1275861_1277223_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|LR130532.1_1277279_1278581_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|LR130532.1_1278602_1279748_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|LR130532.1_1279876_1280662_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|LR130532.1_1280672_1281908_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|LR130532.1_1281929_1282979_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|LR130532.1_1283290_1284958_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|LR130532.1_1284967_1286227_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|LR130532.1_1286237_1287053_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|LR130532.1_1287049_1287943_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|LR130532.1_1288147_1289215_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|LR130532.1_1289211_1289721_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|LR130532.1_1289838_1290561_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|LR130532.1_1290563_1291058_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|LR130532.1_1291231_1292617_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|LR130532.1_1292652_1293174_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|LR130532.1_1293281_1293494_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|LR130532.1_1293495_1294362_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|LR130532.1_1294837_1295380_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|LR130532.1_1295599_1296292_+	PRK15195, PRK15195, molecular chaperone FimC
GCA_900618295.1_ecoli019	LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	3	1529017-1529162	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|56aa|down_2|LR130532.1_1531945_1532113_-,NA|177aa|down_3|LR130532.1_1532427_1532958_+,NA|94aa|down_5|LR130532.1_1533488_1533770_-	NA|50aa|up_9|LR130532.1_1517997_1518147_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|LR130532.1_1518312_1519086_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|LR130532.1_1519085_1519775_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|LR130532.1_1519777_1520836_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|LR130532.1_1520836_1521655_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|LR130532.1_1521809_1522805_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|LR130532.1_1522845_1523799_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|LR130532.1_1523982_1525035_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|LR130532.1_1525110_1526544_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|LR130532.1_1526726_1528988_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|LR130532.1_1529221_1530505_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|357aa|down_1|LR130532.1_1530639_1531710_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|56aa|down_2|LR130532.1_1531945_1532113_-	NA	NA|177aa|down_3|LR130532.1_1532427_1532958_+	NA	NA|74aa|down_4|LR130532.1_1533168_1533390_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|94aa|down_5|LR130532.1_1533488_1533770_-	NA	NA|64aa|down_6|LR130532.1_1533780_1533972_-	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|61aa|down_7|LR130532.1_1533944_1534127_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|227aa|down_8|LR130532.1_1534123_1534804_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|262aa|down_9|LR130532.1_1534800_1535586_-	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet
GCA_900618295.1_ecoli019	LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	4	3811878-3812818	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACNN,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,31,29	0	0	NA	NA	I-E:I-E:I-E	15,15,11	15	TypeI-E	DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|LR130532.1_3803690_3804452_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|LR130532.1_3804432_3805482_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|LR130532.1_3805478_3805958_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|LR130532.1_3805957_3806668_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|LR130532.1_3806686_3806998_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|LR130532.1_3807191_3807515_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|LR130532.1_3807564_3808170_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|LR130532.1_3808169_3809597_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|LR130532.1_3809598_3810507_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|LR130532.1_3810758_3811796_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|LR130532.1_3812914_3813208_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|LR130532.1_3813204_3814128_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|LR130532.1_3814124_3814775_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|LR130532.1_3814756_3815503_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|LR130532.1_3815513_3816569_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|LR130532.1_3816580_3817117_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|LR130532.1_3817113_3818676_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|853aa|down_7|LR130532.1_3818773_3821332_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|LR130532.1_3821660_3821813_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|LR130532.1_3822077_3822812_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_900618295.1_ecoli019	LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5	3838507-3839145	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	DEDDh,cas3,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|424aa|up_9|LR130532.1_3827155_3828427_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|LR130532.1_3828417_3828678_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|LR130532.1_3828694_3829270_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|LR130532.1_3829417_3830278_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|LR130532.1_3830274_3831054_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|LR130532.1_3831031_3832441_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|LR130532.1_3832462_3833917_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|LR130532.1_3833986_3834772_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|LR130532.1_3835090_3836368_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|LR130532.1_3836394_3837873_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|LR130532.1_3839482_3840154_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|235aa|down_1|LR130532.1_3840612_3841317_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|LR130532.1_3841376_3842675_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|LR130532.1_3842762_3844400_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|LR130532.1_3844627_3845419_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|LR130532.1_3845489_3845825_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|LR130532.1_3845824_3846073_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|LR130532.1_3846150_3848385_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|LR130532.1_3848432_3849734_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|LR130532.1_3849790_3852547_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
